Wall clock time and date at job start Tue Mar 9 2021 13:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47636 * 2 1 4 4 C 1.53002 * 109.46816 * 239.99861 * 2 1 3 5 5 Si 1.86301 * 109.47091 * 120.00461 * 2 1 3 6 6 C 1.86305 * 109.46766 * 299.99591 * 5 2 1 7 7 C 1.86302 * 109.47109 * 179.97438 * 5 2 1 8 8 O 1.63096 * 109.47080 * 59.99425 * 5 2 1 9 9 C 1.42902 * 113.99937 * 179.97438 * 8 5 2 10 10 C 1.53494 * 114.20677 * 209.99946 * 9 8 5 11 11 N 1.47072 * 87.98779 * 220.34639 * 10 9 8 12 12 C 1.34773 * 136.05808 * 207.08396 * 11 10 9 13 13 O 1.21568 * 120.00329 * 5.58711 * 12 11 10 14 14 C 1.47723 * 119.99729 * 185.58193 * 12 11 10 15 15 C 1.39633 * 120.12310 * 7.01493 * 14 12 11 16 16 C 1.37855 * 119.88373 * 180.29807 * 15 14 12 17 17 C 1.38634 * 120.11695 * 359.72030 * 16 15 14 18 18 F 1.35100 * 119.88267 * 180.02562 * 17 16 15 19 19 C 1.38677 * 120.23999 * 359.97438 * 17 16 15 20 20 C 1.50701 * 119.94234 * 180.02562 * 19 17 16 21 21 O 1.42894 * 109.47209 * 74.97719 * 20 19 17 22 22 Si 1.86307 * 109.46589 * 314.97574 * 20 19 17 23 23 H 1.48494 * 109.47147 * 60.00663 * 22 20 19 24 24 H 1.48502 * 109.46440 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47238 * 300.00092 * 22 20 19 26 26 C 1.37818 * 120.11787 * 0.02562 * 19 17 16 27 27 C 1.47069 * 87.88148 * 27.34520 * 11 10 9 28 28 H 1.08998 * 109.47013 * 300.00439 * 1 2 3 29 29 H 1.09009 * 109.46833 * 59.99201 * 1 2 3 30 30 H 1.08997 * 109.47396 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47464 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47068 * 300.00737 * 3 2 1 33 33 H 1.09004 * 109.46879 * 59.99870 * 3 2 1 34 34 H 1.08997 * 109.47472 * 300.00363 * 4 2 1 35 35 H 1.09005 * 109.47129 * 60.00832 * 4 2 1 36 36 H 1.08994 * 109.46971 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.46431 * 179.97438 * 6 5 2 38 38 H 1.08997 * 109.47340 * 299.99958 * 6 5 2 39 39 H 1.09002 * 109.46790 * 60.00285 * 6 5 2 40 40 H 1.08994 * 109.46627 * 299.99564 * 7 5 2 41 41 H 1.08997 * 109.47092 * 59.99984 * 7 5 2 42 42 H 1.09005 * 109.46610 * 179.97438 * 7 5 2 43 43 H 1.09001 * 113.41640 * 343.20409 * 9 8 5 44 44 H 1.09004 * 113.46778 * 105.56773 * 10 9 8 45 45 H 1.09000 * 113.52414 * 335.13367 * 10 9 8 46 46 H 1.08007 * 120.05832 * 0.02562 * 15 14 12 47 47 H 1.07994 * 119.94088 * 179.69957 * 16 15 14 48 48 H 1.09000 * 109.47142 * 194.98096 * 20 19 17 49 49 H 0.96702 * 113.99881 * 180.02562 * 21 20 19 50 50 H 1.07998 * 120.06354 * 180.02562 * 26 19 17 51 51 H 1.09004 * 113.47073 * 87.43853 * 27 11 10 52 52 H 1.09002 * 113.46636 * 217.88112 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 14 2.1510 -0.8784 1.5211 6 6 1.5300 -0.0001 3.0422 7 6 4.0140 -0.8790 1.5207 8 8 1.6072 -2.4160 1.5210 9 6 2.0294 -3.1818 2.6512 10 6 2.1847 -4.6831 2.3718 11 7 1.5824 -4.9378 3.6891 12 6 1.6441 -5.9191 4.6109 13 8 2.4187 -6.8442 4.4631 14 6 0.7703 -5.8703 5.8011 15 6 -0.2205 -4.8917 5.9034 16 6 -1.0290 -4.8470 7.0190 17 6 -0.8636 -5.7748 8.0357 18 9 -1.6590 -5.7269 9.1267 19 6 0.1147 -6.7527 7.9364 20 6 0.2883 -7.7583 9.0453 21 8 -0.7688 -8.7181 8.9878 22 14 0.2440 -6.8833 10.6895 23 1 -1.0610 -6.1925 10.8476 24 1 0.4157 -7.8742 11.7822 25 1 1.3425 -5.8859 10.7492 26 6 0.9284 -6.8065 6.8254 27 6 0.8782 -3.6537 3.5548 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1299 -0.7217 -1.2491 37 1 1.8930 -0.5143 3.9322 38 1 1.8934 1.0275 3.0423 39 1 0.4400 -0.0001 3.0422 40 1 4.3769 -1.3931 0.6307 41 1 4.3777 0.1485 1.5205 42 1 4.3773 -1.3926 2.4109 43 1 2.8686 -2.7377 3.1864 44 1 3.2233 -5.0060 2.2995 45 1 1.5749 -5.0362 1.5401 46 1 -0.3503 -4.1685 5.1118 47 1 -1.7925 -4.0875 7.1013 48 1 1.2461 -8.2654 8.9293 49 1 -0.7210 -9.3975 9.6743 50 1 1.6897 -7.5687 6.7489 51 1 -0.0765 -3.7345 3.0350 52 1 0.8037 -3.0996 4.4905 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_12496548.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:38:08 Heat of formation + Delta-G solvation = -117.890100 kcal Electronic energy + Delta-G solvation = -31827.798906 eV Core-core repulsion = 27446.613868 eV Total energy + Delta-G solvation = -4381.185037 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 369.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.38863 -41.89185 -40.30956 -39.04646 -37.65262 -36.78215 -36.53678 -33.24990 -32.20096 -29.92757 -29.25078 -29.00625 -27.79754 -27.59496 -27.28220 -26.59036 -24.84863 -23.43364 -22.45342 -20.43901 -20.33067 -19.06074 -18.67908 -18.60289 -18.29030 -17.91188 -17.33640 -16.84689 -16.42203 -16.02795 -15.96152 -15.54513 -15.25689 -15.22971 -14.97628 -14.81321 -14.78328 -14.75361 -14.55607 -14.41806 -14.10650 -13.85967 -13.77683 -13.51876 -13.47102 -13.32142 -13.13348 -13.05695 -12.89744 -12.87754 -12.85542 -12.77607 -12.33685 -12.29701 -12.25963 -11.72610 -11.64269 -11.50387 -11.30702 -11.25485 -11.10517 -10.62580 -10.26092 -10.17693 -10.02139 -9.97270 -9.75964 -0.54674 -0.03340 1.08106 1.24800 1.38829 1.46123 1.52154 1.81548 1.83115 1.90365 2.14769 2.46263 2.52888 2.99111 3.14319 3.20023 3.32844 3.58724 3.72364 3.81659 3.93406 4.07480 4.08294 4.16741 4.17608 4.18089 4.35437 4.46722 4.50982 4.59882 4.60653 4.66289 4.70114 4.75659 4.78698 4.82888 4.86406 4.87293 4.88192 4.89065 4.91315 4.96797 5.06292 5.07838 5.15009 5.16012 5.26843 5.40474 5.47568 5.49290 5.55138 5.57589 5.65291 5.73382 6.48202 6.71794 6.89196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.385 4.385 3 C -0.142 4.142 4 C -0.139 4.139 5 Si 1.324 2.676 6 C -0.516 4.516 7 C -0.525 4.525 8 O -0.610 6.610 9 C 0.083 3.917 10 C 0.092 3.908 11 N -0.643 5.643 12 C 0.592 3.408 13 O -0.576 6.576 14 C -0.154 4.154 15 C -0.052 4.052 16 C -0.152 4.152 17 C 0.114 3.886 18 F -0.127 7.127 19 C -0.133 4.133 20 C -0.083 4.083 21 O -0.560 6.560 22 Si 0.964 3.036 23 H -0.248 1.248 24 H -0.252 1.252 25 H -0.264 1.264 26 C -0.021 4.021 27 C 0.067 3.933 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.120 0.880 44 H 0.080 0.920 45 H 0.106 0.894 46 H 0.177 0.823 47 H 0.175 0.825 48 H 0.099 0.901 49 H 0.400 0.600 50 H 0.145 0.855 51 H 0.123 0.877 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.735 5.315 0.272 5.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.427 4.427 3 C -0.199 4.199 4 C -0.196 4.196 5 Si 1.454 2.546 6 C -0.618 4.618 7 C -0.626 4.626 8 O -0.567 6.567 9 C 0.025 3.975 10 C -0.030 4.030 11 N -0.378 5.378 12 C 0.384 3.616 13 O -0.457 6.457 14 C -0.157 4.157 15 C -0.069 4.069 16 C -0.170 4.170 17 C 0.095 3.905 18 F -0.106 7.106 19 C -0.134 4.134 20 C -0.193 4.193 21 O -0.370 6.370 22 Si 0.786 3.214 23 H -0.172 1.172 24 H -0.176 1.176 25 H -0.188 1.188 26 C -0.040 4.040 27 C -0.055 4.055 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.138 0.862 44 H 0.099 0.901 45 H 0.124 0.876 46 H 0.194 0.806 47 H 0.192 0.808 48 H 0.117 0.883 49 H 0.251 0.749 50 H 0.162 0.838 51 H 0.141 0.859 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.697 5.269 0.502 5.339 hybrid contribution 0.378 -0.374 0.034 0.533 sum -0.319 4.895 0.536 4.935 Atomic orbital electron populations 1.21557 0.93949 1.02077 1.01878 1.25992 1.00659 1.02829 1.13246 1.21614 1.01142 0.94976 1.02214 1.21563 1.00895 1.00218 0.96938 0.76099 0.61833 0.52417 0.64224 1.27082 1.07503 1.09690 1.17553 1.27226 1.25989 1.04908 1.04513 1.85421 1.78566 1.46595 1.46154 1.23354 0.97087 0.90867 0.86240 1.23491 1.00596 0.93807 0.85135 1.49037 1.48106 1.21318 1.19351 1.17756 0.81974 0.79777 0.82102 1.90799 1.41057 1.35431 1.78431 1.19862 1.00104 1.00088 0.95622 1.21955 0.91193 0.96052 0.97748 1.21468 1.02674 1.00212 0.92685 1.18237 0.90270 0.96851 0.85186 1.91574 1.72246 1.95823 1.50914 1.19433 0.98204 0.97676 0.98065 1.24696 0.94384 0.94346 1.05859 1.86466 1.48726 1.42895 1.58888 0.85743 0.80744 0.79899 0.74983 1.17153 1.17646 1.18813 1.21041 0.96990 0.96356 0.89640 1.24197 0.98754 0.81065 1.01490 0.91675 0.93825 0.91994 0.92093 0.93438 0.91559 0.92160 0.93675 0.92372 0.90514 0.90623 0.90213 0.91325 0.90564 0.91080 0.86223 0.90109 0.87626 0.80592 0.80777 0.88291 0.74905 0.83759 0.85911 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.50 7.85 71.98 0.56 1.07 16 2 C -0.39 1.57 0.53 -10.79 -0.01 1.56 16 3 C -0.14 0.55 7.85 71.98 0.56 1.11 16 4 C -0.14 0.30 7.85 71.98 0.56 0.87 16 5 Si 1.32 -9.78 8.24 68.60 0.57 -9.22 16 6 C -0.52 4.17 8.65 113.37 0.98 5.15 16 7 C -0.53 2.65 8.64 113.37 0.98 3.63 16 8 O -0.61 3.86 8.61 -148.98 -1.28 2.57 16 9 C 0.08 -0.59 3.92 31.02 0.12 -0.47 16 10 C 0.09 -0.23 8.45 83.18 0.70 0.47 16 11 N -0.64 0.29 3.67 -861.88 -3.16 -2.87 16 12 C 0.59 3.70 8.00 86.75 0.69 4.40 16 13 O -0.58 -8.56 17.14 -3.93 -0.07 -8.63 16 14 C -0.15 -0.44 5.87 -20.09 -0.12 -0.55 16 15 C -0.05 0.17 9.13 22.52 0.21 0.37 16 16 C -0.15 0.35 10.01 22.27 0.22 0.58 16 17 C 0.11 0.37 6.67 22.47 0.15 0.52 16 18 F -0.13 -0.72 12.82 44.97 0.58 -0.14 16 19 C -0.13 -0.51 4.80 -19.86 -0.10 -0.61 16 20 C -0.08 -0.09 2.79 71.24 0.20 0.11 16 21 O -0.56 -1.21 12.86 -148.98 -1.92 -3.13 16 22 Si 0.96 1.00 26.09 68.60 1.79 2.79 16 23 H -0.25 -1.13 5.29 99.48 0.53 -0.61 16 24 H -0.25 -0.07 7.11 99.48 0.71 0.64 16 25 H -0.26 -0.75 7.11 99.48 0.71 -0.04 16 26 C -0.02 -0.09 9.20 22.52 0.21 0.11 16 27 C 0.07 -0.57 5.96 83.27 0.50 -0.07 16 28 H 0.06 -0.37 7.79 -2.39 -0.02 -0.39 16 29 H 0.04 -0.07 8.14 -2.38 -0.02 -0.09 16 30 H 0.06 -0.24 7.97 -2.39 -0.02 -0.26 16 31 H 0.06 -0.29 7.79 -2.39 -0.02 -0.31 16 32 H 0.05 -0.09 8.14 -2.38 -0.02 -0.11 16 33 H 0.07 -0.38 7.79 -2.39 -0.02 -0.40 16 34 H 0.06 -0.13 7.96 -2.39 -0.02 -0.15 16 35 H 0.04 -0.03 8.14 -2.38 -0.02 -0.04 16 36 H 0.06 -0.18 7.79 -2.39 -0.02 -0.19 16 37 H 0.08 -0.73 7.96 -2.39 -0.02 -0.75 16 38 H 0.07 -0.56 7.79 -2.39 -0.02 -0.58 16 39 H 0.08 -0.68 7.79 -2.39 -0.02 -0.70 16 40 H 0.07 -0.25 7.79 -2.39 -0.02 -0.27 16 41 H 0.08 -0.38 7.79 -2.39 -0.02 -0.40 16 42 H 0.07 -0.41 7.31 -2.38 -0.02 -0.43 16 43 H 0.12 -1.21 6.50 -2.39 -0.02 -1.22 16 44 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 45 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 46 H 0.18 -1.73 4.20 -2.91 -0.01 -1.74 16 47 H 0.17 -1.40 8.06 -2.91 -0.02 -1.43 16 48 H 0.10 -0.30 7.77 -2.39 -0.02 -0.32 16 49 H 0.40 -2.81 8.74 -74.06 -0.65 -3.46 16 50 H 0.14 0.67 7.60 -2.91 -0.02 0.64 16 51 H 0.12 -1.39 8.13 -2.38 -0.02 -1.41 16 52 H 0.12 -1.54 6.76 -2.39 -0.02 -1.56 16 Total: 0.00 -20.23 417.11 3.79 -16.44 By element: Atomic # 1 Polarization: -16.93 SS G_CDS: 0.84 Total: -16.08 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 6.44 Total: 18.25 kcal Atomic # 7 Polarization: 0.29 SS G_CDS: -3.16 Total: -2.87 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -3.27 Total: -9.18 kcal Atomic # 9 Polarization: -0.72 SS G_CDS: 0.58 Total: -0.14 kcal Atomic # 14 Polarization: -8.78 SS G_CDS: 2.36 Total: -6.42 kcal Total: -20.23 3.79 -16.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_12496548.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.452 kcal (2) G-P(sol) polarization free energy of solvation -20.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds