Wall clock time and date at job start Tue Mar 9 2021 13:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34657 * 124.85063 * 2 1 4 4 C 1.36772 * 108.40053 * 180.02562 * 3 2 1 5 5 C 1.47252 * 126.94811 * 180.02562 * 4 3 2 6 6 O 1.21622 * 120.00559 * 179.97438 * 5 4 3 7 7 N 1.34777 * 119.99890 * 359.97438 * 5 4 3 8 8 C 1.47065 * 136.05665 * 359.62337 * 7 5 4 9 9 C 1.53758 * 87.89050 * 152.96637 * 8 7 5 10 10 O 1.42901 * 114.08938 * 139.77751 * 9 8 7 11 11 Si 1.63091 * 114.00082 * 116.56427 * 10 9 8 12 12 C 1.86300 * 109.47128 * 300.00096 * 11 10 9 13 13 C 1.86300 * 109.47154 * 59.99855 * 11 10 9 14 14 C 1.86294 * 109.47505 * 180.02562 * 11 10 9 15 15 C 1.53002 * 109.47392 * 59.99691 * 14 11 10 16 16 C 1.53001 * 109.47620 * 180.02562 * 14 11 10 17 17 C 1.53009 * 109.46989 * 300.00061 * 14 11 10 18 18 C 1.47075 * 136.06053 * 180.02562 * 7 5 4 19 19 C 1.46690 * 106.11185 * 0.02562 * 4 3 2 20 20 C 1.34485 * 106.33515 * 359.97438 * 19 4 3 21 21 C 1.50697 * 125.57502 * 179.73678 * 20 19 4 22 22 O 1.42902 * 109.47403 * 150.02683 * 21 20 19 23 23 Si 1.86291 * 109.47321 * 30.02237 * 21 20 19 24 24 H 1.48500 * 109.47102 * 60.00059 * 23 21 20 25 25 H 1.48500 * 109.47493 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47157 * 300.00372 * 23 21 20 27 27 H 1.08993 * 109.47238 * 269.97976 * 1 2 3 28 28 H 1.09003 * 109.46968 * 29.97508 * 1 2 3 29 29 H 1.08998 * 109.46977 * 149.97404 * 1 2 3 30 30 H 1.08005 * 125.80427 * 0.02562 * 3 2 1 31 31 H 1.09003 * 113.46763 * 267.69493 * 8 7 5 32 32 H 1.08993 * 113.46902 * 38.14033 * 8 7 5 33 33 H 1.08995 * 114.39783 * 272.67987 * 9 8 7 34 34 H 1.09002 * 109.47303 * 59.99848 * 12 11 10 35 35 H 1.08996 * 109.47424 * 179.97438 * 12 11 10 36 36 H 1.09005 * 109.47414 * 299.99891 * 12 11 10 37 37 H 1.09005 * 109.47025 * 60.00486 * 13 11 10 38 38 H 1.09003 * 109.46931 * 180.02562 * 13 11 10 39 39 H 1.08992 * 109.47560 * 300.00189 * 13 11 10 40 40 H 1.08996 * 109.46890 * 60.00062 * 15 14 11 41 41 H 1.09002 * 109.47155 * 180.02562 * 15 14 11 42 42 H 1.09003 * 109.46824 * 300.00564 * 15 14 11 43 43 H 1.08999 * 109.47068 * 59.99519 * 16 14 11 44 44 H 1.09001 * 109.47385 * 180.02562 * 16 14 11 45 45 H 1.08996 * 109.46751 * 299.99992 * 16 14 11 46 46 H 1.08996 * 109.47342 * 59.99818 * 17 14 11 47 47 H 1.08997 * 109.46976 * 180.02562 * 17 14 11 48 48 H 1.08999 * 109.46810 * 299.99937 * 17 14 11 49 49 H 1.09003 * 113.46245 * 321.86535 * 18 7 5 50 50 H 1.09002 * 113.46664 * 92.23625 * 18 7 5 51 51 H 1.07996 * 126.83585 * 180.02562 * 19 4 3 52 52 H 1.09007 * 109.47135 * 270.02211 * 21 20 19 53 53 H 0.96700 * 113.99660 * 299.99761 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2344 1.1051 0.0000 4 6 3.5462 0.7177 -0.0006 5 6 4.7283 1.5957 -0.0003 6 8 5.8446 1.1129 -0.0004 7 7 4.5733 2.9346 0.0002 8 6 3.4378 3.8691 -0.0063 9 6 4.3466 4.8892 0.6992 10 8 4.1917 6.2303 0.2308 11 14 3.6375 7.2677 1.3607 12 6 1.9681 6.6986 1.9607 13 6 4.8275 7.3197 2.7931 14 6 3.4829 8.9696 0.6188 15 6 2.5053 8.9265 -0.5573 16 6 2.9636 9.9429 1.6789 17 6 4.8537 9.4373 0.1256 18 6 5.4653 4.1039 0.0001 19 6 3.5375 -0.7491 -0.0016 20 6 2.2448 -1.1197 -0.0009 21 6 1.7398 -2.5396 -0.0072 22 8 0.4818 -2.6008 0.6680 23 14 2.9662 -3.6387 0.8636 24 1 3.1342 -3.1793 2.2657 25 1 2.4689 -5.0380 0.8569 26 1 4.2733 -3.5751 0.1618 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5142 30 1 1.8767 2.1241 0.0004 31 1 3.1348 4.1771 -1.0070 32 1 2.5990 3.5371 0.6053 33 1 4.3554 4.8083 1.7861 34 1 2.0580 5.7028 2.3947 35 1 1.5978 7.3916 2.7161 36 1 1.2717 6.6682 1.1226 37 1 5.8043 7.6527 2.4420 38 1 4.4568 8.0127 3.5484 39 1 4.9175 6.3240 3.2271 40 1 1.5288 8.5932 -0.2060 41 1 2.4152 9.9222 -0.9916 42 1 2.8757 8.2331 -1.3124 43 1 3.6604 9.9735 2.5165 44 1 2.8728 10.9386 1.2447 45 1 1.9872 9.6099 2.0307 46 1 5.2242 8.7441 -0.6295 47 1 4.7634 10.4332 -0.3080 48 1 5.5502 9.4680 0.9635 49 1 6.3541 3.9718 0.6172 50 1 5.6972 4.4730 -0.9990 51 1 4.3980 -1.4017 -0.0018 52 1 1.6164 -2.8768 -1.0364 53 1 0.5166 -2.3144 1.5910 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_13287730.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:43 Heat of formation + Delta-G solvation = -66.047303 kcal Electronic energy + Delta-G solvation = -30257.791545 eV Core-core repulsion = 26255.571166 eV Total energy + Delta-G solvation = -4002.220379 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.53430 -41.28127 -39.07760 -37.72562 -36.78631 -36.46589 -33.78103 -31.87299 -29.91883 -29.26805 -29.01200 -27.79781 -27.51376 -27.32172 -27.08229 -25.96691 -23.93623 -22.01723 -20.77338 -20.34722 -20.15629 -18.80155 -18.39262 -17.61571 -17.25771 -16.79849 -16.42408 -16.17189 -15.96693 -15.72374 -15.48609 -15.18821 -15.06699 -14.82629 -14.78470 -14.70208 -14.50489 -14.25196 -13.93661 -13.82078 -13.50997 -13.38684 -13.32265 -13.22092 -13.16145 -13.12671 -12.96764 -12.90425 -12.87046 -12.76684 -12.39957 -12.33552 -12.07288 -11.92571 -11.72273 -11.64983 -11.47783 -11.24590 -11.11039 -10.73244 -10.26913 -10.02404 -9.92495 -9.56557 -9.24520 0.66103 0.93857 1.29732 1.34194 1.47497 1.52743 1.81343 1.84766 1.93899 2.07979 2.14650 2.43809 2.54515 3.24801 3.35098 3.48158 3.66673 3.80438 3.84894 4.08519 4.14682 4.17197 4.17523 4.39403 4.41276 4.49958 4.50726 4.54911 4.58587 4.61717 4.66704 4.68811 4.77763 4.81734 4.83416 4.86131 4.87771 4.88777 4.91050 4.92027 5.03583 5.05655 5.14392 5.15349 5.26308 5.39840 5.46720 5.49382 5.55424 5.59839 5.64358 5.72526 5.93577 6.21727 6.56467 6.64218 7.14847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.421 5.421 3 C 0.072 3.928 4 C -0.258 4.258 5 C 0.616 3.384 6 O -0.598 6.598 7 N -0.648 5.648 8 C 0.078 3.922 9 C 0.085 3.915 10 O -0.612 6.612 11 Si 1.320 2.680 12 C -0.513 4.513 13 C -0.526 4.526 14 C -0.384 4.384 15 C -0.137 4.137 16 C -0.142 4.142 17 C -0.139 4.139 18 C 0.090 3.910 19 C -0.174 4.174 20 C -0.013 4.013 21 C -0.041 4.041 22 O -0.543 6.543 23 Si 0.995 3.005 24 H -0.263 1.263 25 H -0.260 1.260 26 H -0.271 1.271 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.207 0.793 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.043 0.957 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.045 0.955 48 H 0.057 0.943 49 H 0.075 0.925 50 H 0.099 0.901 51 H 0.135 0.865 52 H 0.134 0.866 53 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.035 3.052 1.893 9.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.095 5.095 3 C -0.066 4.066 4 C -0.268 4.268 5 C 0.410 3.590 6 O -0.481 6.481 7 N -0.384 5.384 8 C -0.044 4.044 9 C 0.027 3.973 10 O -0.569 6.569 11 Si 1.450 2.550 12 C -0.615 4.615 13 C -0.626 4.626 14 C -0.426 4.426 15 C -0.194 4.194 16 C -0.199 4.199 17 C -0.196 4.196 18 C -0.033 4.033 19 C -0.198 4.198 20 C -0.123 4.123 21 C -0.152 4.152 22 O -0.349 6.349 23 Si 0.819 3.181 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.196 1.196 27 H 0.113 0.887 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.224 0.776 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.094 0.906 50 H 0.117 0.883 51 H 0.153 0.847 52 H 0.152 0.848 53 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -8.335 1.783 1.467 8.649 hybrid contribution 0.543 0.925 0.488 1.178 sum -7.791 2.708 1.955 8.477 Atomic orbital electron populations 1.22549 0.73781 1.06204 1.05441 1.43779 1.08361 1.04223 1.53133 1.22624 0.88912 0.93245 1.01796 1.20167 0.92137 0.93472 1.20985 1.17182 0.87893 0.79448 0.74446 1.90754 1.28274 1.74888 1.54145 1.49040 1.13130 1.02814 1.73387 1.24004 0.91438 0.85330 1.03636 1.23326 0.95850 0.80053 0.98037 1.85417 1.85999 1.23920 1.61609 0.76178 0.63390 0.59494 0.55910 1.27038 1.20503 1.06730 1.07278 1.27231 1.13155 1.04707 1.17544 1.25972 0.97842 1.17142 1.01679 1.21552 0.98853 1.01668 0.97346 1.21610 1.01395 0.98867 0.98022 1.21565 0.95901 1.01040 1.01137 1.23430 0.95625 0.81676 1.02554 1.21786 0.95855 0.93572 1.08610 1.20919 0.89939 0.90397 1.11033 1.24559 0.93567 0.93048 1.04018 1.86473 1.28954 1.89600 1.29915 0.85037 0.76323 0.77680 0.79050 1.18701 1.18356 1.19617 0.88712 0.87889 0.88263 0.77615 0.86772 0.87132 0.86310 0.90504 0.90488 0.90145 0.91450 0.90456 0.91182 0.91566 0.93748 0.92160 0.92120 0.93382 0.91458 0.92312 0.93585 0.92411 0.90621 0.88254 0.84709 0.84824 0.76065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.61 9.82 127.77 1.25 0.65 16 2 N -0.42 1.22 3.09 -533.25 -1.65 -0.42 16 3 C 0.07 -0.12 10.51 83.92 0.88 0.76 16 4 C -0.26 -1.83 6.29 -19.04 -0.12 -1.95 16 5 C 0.62 7.28 8.06 86.61 0.70 7.98 16 6 O -0.60 -13.03 17.75 -4.10 -0.07 -13.11 16 7 N -0.65 -2.38 3.69 -862.39 -3.18 -5.56 16 8 C 0.08 -0.46 6.99 83.27 0.58 0.12 16 9 C 0.09 -0.40 3.92 31.02 0.12 -0.28 16 10 O -0.61 2.73 8.61 -148.98 -1.28 1.45 16 11 Si 1.32 -8.46 8.24 68.60 0.57 -7.89 16 12 C -0.51 4.04 8.65 113.37 0.98 5.02 16 13 C -0.53 2.07 8.64 113.37 0.98 3.05 16 14 C -0.38 1.31 0.53 -10.79 -0.01 1.31 16 15 C -0.14 0.43 7.85 71.98 0.56 1.00 16 16 C -0.14 0.51 7.85 71.98 0.56 1.07 16 17 C -0.14 0.18 7.85 71.99 0.56 0.75 16 18 C 0.09 0.11 8.45 83.18 0.70 0.81 16 19 C -0.17 -1.32 9.50 23.62 0.22 -1.10 16 20 C -0.01 -0.01 6.13 40.98 0.25 0.24 16 21 C -0.04 0.12 2.86 71.23 0.20 0.32 16 22 O -0.54 2.89 10.33 -148.98 -1.54 1.35 16 23 Si 1.00 -0.03 26.56 68.60 1.82 1.79 16 24 H -0.26 -0.52 7.11 99.48 0.71 0.19 16 25 H -0.26 -0.33 7.11 99.48 0.71 0.38 16 26 H -0.27 -1.12 6.81 99.48 0.68 -0.44 16 27 H 0.09 -1.24 8.14 -2.39 -0.02 -1.26 16 28 H 0.10 -1.43 8.13 -2.39 -0.02 -1.45 16 29 H 0.10 -0.87 6.72 -2.39 -0.02 -0.89 16 30 H 0.21 -1.97 5.17 -2.91 -0.02 -1.99 16 31 H 0.11 -0.92 8.14 -2.39 -0.02 -0.94 16 32 H 0.11 -1.29 6.17 -2.39 -0.01 -1.30 16 33 H 0.12 -0.94 6.50 -2.39 -0.02 -0.95 16 34 H 0.08 -0.72 7.96 -2.39 -0.02 -0.74 16 35 H 0.08 -0.58 7.79 -2.39 -0.02 -0.59 16 36 H 0.08 -0.69 7.79 -2.38 -0.02 -0.71 16 37 H 0.07 -0.16 7.79 -2.38 -0.02 -0.18 16 38 H 0.08 -0.33 7.79 -2.39 -0.02 -0.35 16 39 H 0.07 -0.32 7.31 -2.39 -0.02 -0.33 16 40 H 0.07 -0.36 7.79 -2.39 -0.02 -0.38 16 41 H 0.04 -0.06 8.14 -2.39 -0.02 -0.07 16 42 H 0.06 -0.19 7.97 -2.39 -0.02 -0.21 16 43 H 0.06 -0.27 7.79 -2.39 -0.02 -0.29 16 44 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.07 -0.38 7.79 -2.39 -0.02 -0.40 16 46 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 47 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 48 H 0.06 -0.12 7.80 -2.39 -0.02 -0.14 16 49 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 50 H 0.10 0.06 8.14 -2.39 -0.02 0.05 16 51 H 0.14 1.34 6.69 -2.91 -0.02 1.32 16 52 H 0.13 -0.64 7.96 -2.38 -0.02 -0.66 16 53 H 0.39 -4.20 8.70 -74.06 -0.64 -4.85 16 Total: 0.00 -23.90 419.74 4.09 -19.81 By element: Atomic # 1 Polarization: -18.14 SS G_CDS: 0.97 Total: -17.17 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 8.45 Total: 19.75 kcal Atomic # 7 Polarization: -1.16 SS G_CDS: -4.83 Total: -5.98 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -2.89 Total: -10.31 kcal Atomic # 14 Polarization: -8.49 SS G_CDS: 2.39 Total: -6.10 kcal Total: -23.90 4.09 -19.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_13287730.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.237 kcal (2) G-P(sol) polarization free energy of solvation -23.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds