Wall clock time and date at job start Tue Mar 9 2021 13:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37684 * 119.95143 * 2 1 4 4 C 1.39756 * 119.90977 * 180.02562 * 3 2 1 5 5 C 1.47603 * 120.08808 * 180.02562 * 4 3 2 6 6 O 1.21584 * 119.99817 * 186.72194 * 5 4 3 7 7 N 1.34773 * 120.00099 * 6.72163 * 5 4 3 8 8 C 1.47070 * 136.05549 * 5.23557 * 7 5 4 9 9 C 1.53754 * 87.88426 * 152.96567 * 8 7 5 10 10 O 1.42910 * 114.08545 * 139.78062 * 9 8 7 11 11 Si 1.63095 * 113.99894 * 116.55976 * 10 9 8 12 12 C 1.86296 * 109.47342 * 300.00093 * 11 10 9 13 13 C 1.86304 * 109.47153 * 60.00123 * 11 10 9 14 14 C 1.86306 * 109.47019 * 179.97438 * 11 10 9 15 15 C 1.52993 * 109.46977 * 60.00218 * 14 11 10 16 16 C 1.52998 * 109.46881 * 180.02562 * 14 11 10 17 17 C 1.53000 * 109.47096 * 300.00074 * 14 11 10 18 18 C 1.47068 * 136.05965 * 185.61433 * 7 5 4 19 19 C 1.39716 * 119.82238 * 359.97438 * 4 3 2 20 20 C 1.37725 * 119.91233 * 0.02562 * 19 4 3 21 21 C 1.50699 * 119.95501 * 179.97438 * 20 19 4 22 22 O 1.42907 * 109.47204 * 105.02008 * 21 20 19 23 23 Si 1.86295 * 109.47199 * 345.01771 * 21 20 19 24 24 H 1.48504 * 109.47171 * 60.00025 * 23 21 20 25 25 H 1.48498 * 109.47211 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47192 * 300.00296 * 23 21 20 27 27 C 1.38981 * 120.08724 * 359.97438 * 20 19 4 28 28 O 1.35708 * 119.90773 * 179.72788 * 27 20 19 29 29 H 1.09001 * 109.47264 * 269.97660 * 1 2 3 30 30 H 1.09000 * 109.47766 * 29.97864 * 1 2 3 31 31 H 1.09005 * 109.46868 * 149.98316 * 1 2 3 32 32 H 1.08004 * 120.04806 * 359.97438 * 3 2 1 33 33 H 1.09000 * 113.46814 * 267.69793 * 8 7 5 34 34 H 1.08995 * 113.47065 * 38.13894 * 8 7 5 35 35 H 1.09000 * 114.39513 * 272.67308 * 9 8 7 36 36 H 1.09005 * 109.47256 * 59.99909 * 12 11 10 37 37 H 1.09005 * 109.47380 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.47071 * 299.99973 * 12 11 10 39 39 H 1.09003 * 109.47126 * 60.00002 * 13 11 10 40 40 H 1.08999 * 109.47266 * 179.97438 * 13 11 10 41 41 H 1.08997 * 109.47282 * 299.99818 * 13 11 10 42 42 H 1.09003 * 109.47271 * 59.99787 * 15 14 11 43 43 H 1.08997 * 109.47223 * 180.02562 * 15 14 11 44 44 H 1.08999 * 109.47181 * 299.99980 * 15 14 11 45 45 H 1.09001 * 109.47135 * 60.00138 * 16 14 11 46 46 H 1.09005 * 109.46881 * 179.97438 * 16 14 11 47 47 H 1.08997 * 109.47518 * 299.99927 * 16 14 11 48 48 H 1.08999 * 109.47004 * 60.00055 * 17 14 11 49 49 H 1.08997 * 109.46992 * 179.97438 * 17 14 11 50 50 H 1.09001 * 109.47230 * 300.00052 * 17 14 11 51 51 H 1.08999 * 113.46174 * 321.85902 * 18 7 5 52 52 H 1.08997 * 113.46990 * 92.24275 * 18 7 5 53 53 H 1.08000 * 120.04134 * 179.97438 * 19 4 3 54 54 H 1.08994 * 109.46867 * 225.01616 * 21 20 19 55 55 H 0.96695 * 113.99587 * 59.99733 * 22 21 20 56 56 H 0.96703 * 113.99986 * 90.00268 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1930 0.0000 4 6 3.5920 1.1919 -0.0005 5 6 4.3329 2.4685 0.0000 6 8 5.5424 2.4695 -0.1237 7 7 3.6687 3.6331 0.1377 8 6 2.2780 4.0347 0.3978 9 6 2.8282 5.3262 1.0249 10 8 2.0760 6.4977 0.7022 11 14 1.3797 7.2149 1.9909 12 6 0.2098 6.0189 2.8103 13 6 2.6975 7.7249 3.2050 14 6 0.4371 8.7206 1.4295 15 6 -0.6451 8.3023 0.4322 16 6 -0.2155 9.3938 2.6385 17 6 1.3984 9.7027 0.7569 18 6 4.0143 5.0617 0.0873 19 6 4.2859 -0.0207 -0.0005 20 6 3.5909 -1.2097 -0.0005 21 6 4.3384 -2.5182 -0.0011 22 8 4.2720 -3.1054 1.3001 23 14 6.1195 -2.2157 -0.4558 24 1 6.7338 -1.2952 0.5345 25 1 6.8560 -3.5052 -0.4570 26 1 6.1885 -1.6056 -1.8079 27 6 2.2011 -1.2044 0.0000 28 8 1.5199 -2.3781 -0.0056 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8899 -0.5141 32 1 1.6544 2.1283 -0.0004 33 1 1.6985 4.2054 -0.5095 34 1 1.7656 3.3884 1.1104 35 1 3.0694 5.2447 2.0848 36 1 0.7616 5.1381 3.1389 37 1 -0.2559 6.4984 3.6714 38 1 -0.5613 5.7205 2.1000 39 1 3.3821 8.4247 2.7255 40 1 2.2322 8.2047 4.0661 41 1 3.2494 6.8443 3.5335 42 1 -1.3299 7.6027 0.9114 43 1 -1.1963 9.1833 0.1034 44 1 -0.1798 7.8230 -0.4291 45 1 0.5558 9.6918 3.3487 46 1 -0.7667 10.2750 2.3101 47 1 -0.9003 8.6944 3.1181 48 1 1.8637 9.2233 -0.1044 49 1 0.8469 10.5834 0.4280 50 1 2.1694 10.0007 1.4674 51 1 4.9812 5.2904 0.5354 52 1 3.8935 5.5029 -0.9021 53 1 5.3659 -0.0256 -0.0014 54 1 3.8876 -3.1938 -0.7279 55 1 3.3725 -3.2907 1.6024 56 1 1.3228 -2.7227 0.8762 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_13287732.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:55 Heat of formation + Delta-G solvation = -136.283036 kcal Electronic energy + Delta-G solvation = -34168.957335 eV Core-core repulsion = 29782.208884 eV Total energy + Delta-G solvation = -4386.748450 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 381.198 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.06446 -41.09588 -39.43164 -37.74270 -37.61756 -36.79207 -36.56432 -34.04872 -32.36574 -29.88633 -29.26089 -29.01799 -28.02727 -27.80340 -27.57965 -27.28595 -26.51170 -24.75672 -22.57556 -22.24748 -20.40641 -20.31975 -19.60913 -18.78259 -18.48655 -17.91605 -17.86215 -17.01765 -16.60201 -16.46081 -16.29831 -15.96970 -15.67415 -15.17296 -15.13010 -14.92483 -14.80262 -14.77466 -14.58534 -14.35598 -14.18947 -14.07394 -13.88976 -13.68404 -13.53775 -13.38169 -13.33816 -13.14973 -13.09514 -12.93520 -12.90612 -12.87498 -12.79688 -12.77787 -12.37833 -12.33790 -12.27943 -11.95014 -11.74221 -11.65468 -11.52488 -11.32406 -11.29497 -11.12981 -11.02135 -10.28247 -10.06133 -10.02063 -9.96595 -9.66236 -0.47432 0.02920 1.09177 1.21928 1.37390 1.42193 1.50014 1.80114 1.81523 1.83806 2.13013 2.45133 2.51266 3.02695 3.13014 3.25875 3.39422 3.59184 3.76113 3.80540 3.92618 4.04552 4.11473 4.16566 4.17294 4.20788 4.32379 4.38955 4.48365 4.50024 4.55971 4.57367 4.62363 4.65099 4.74897 4.76871 4.80734 4.84739 4.85748 4.87224 4.88080 4.90475 4.99982 5.05487 5.09087 5.14307 5.15343 5.20714 5.25715 5.29034 5.39397 5.46628 5.47460 5.53317 5.58341 5.63682 5.72189 6.43761 6.57581 6.76614 6.85318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.113 4.113 3 C -0.069 4.069 4 C -0.148 4.148 5 C 0.587 3.413 6 O -0.582 6.582 7 N -0.643 5.643 8 C 0.069 3.931 9 C 0.085 3.915 10 O -0.610 6.610 11 Si 1.322 2.678 12 C -0.514 4.514 13 C -0.526 4.526 14 C -0.384 4.384 15 C -0.137 4.137 16 C -0.142 4.142 17 C -0.139 4.139 18 C 0.090 3.910 19 C -0.076 4.076 20 C -0.151 4.151 21 C -0.072 4.072 22 O -0.545 6.545 23 Si 1.014 2.986 24 H -0.277 1.277 25 H -0.259 1.259 26 H -0.255 1.255 27 C 0.156 3.844 28 O -0.491 6.491 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.168 0.832 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.047 0.953 47 H 0.066 0.934 48 H 0.059 0.941 49 H 0.045 0.955 50 H 0.057 0.943 51 H 0.079 0.921 52 H 0.107 0.893 53 H 0.121 0.879 54 H 0.101 0.899 55 H 0.381 0.619 56 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.368 0.415 2.850 9.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.114 4.114 3 C -0.088 4.088 4 C -0.151 4.151 5 C 0.379 3.621 6 O -0.464 6.464 7 N -0.378 5.378 8 C -0.052 4.052 9 C 0.027 3.973 10 O -0.567 6.567 11 Si 1.452 2.548 12 C -0.617 4.617 13 C -0.627 4.627 14 C -0.426 4.426 15 C -0.194 4.194 16 C -0.199 4.199 17 C -0.196 4.196 18 C -0.032 4.032 19 C -0.095 4.095 20 C -0.152 4.152 21 C -0.182 4.182 22 O -0.352 6.352 23 Si 0.838 3.162 24 H -0.202 1.202 25 H -0.183 1.183 26 H -0.179 1.179 27 C 0.110 3.890 28 O -0.306 6.306 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.185 0.815 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.085 0.915 48 H 0.078 0.922 49 H 0.064 0.936 50 H 0.076 0.924 51 H 0.097 0.903 52 H 0.125 0.875 53 H 0.138 0.862 54 H 0.119 0.881 55 H 0.231 0.769 56 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -7.075 0.515 1.615 7.275 hybrid contribution -0.646 0.324 0.930 1.178 sum -7.721 0.839 2.545 8.173 Atomic orbital electron populations 1.20800 0.87580 1.04401 1.04036 1.20500 0.98625 0.91434 1.00846 1.21841 0.91542 0.99954 0.95414 1.19709 0.94750 0.91787 1.08816 1.17910 0.85863 0.82842 0.75469 1.90792 1.15652 1.87274 1.52634 1.49044 1.13247 1.05207 1.70303 1.24168 0.83921 0.94141 1.02977 1.23324 0.91492 0.83864 0.98662 1.85421 1.67986 1.42151 1.61150 0.76149 0.62189 0.62402 0.54058 1.27058 1.13009 1.12581 1.09043 1.27238 1.15034 1.06319 1.14094 1.25967 1.03786 1.12838 1.00016 1.21553 0.97964 1.01181 0.98746 1.21614 1.00717 1.00702 0.96900 1.21565 0.98721 0.98815 1.00541 1.23506 0.99736 0.77952 1.01993 1.21094 1.00215 0.91518 0.96689 1.20547 0.94412 0.95620 1.04644 1.24941 1.11826 0.92064 0.89378 1.86757 1.34008 1.82746 1.31729 0.84400 0.73442 0.79263 0.79092 1.20208 1.18325 1.17864 1.18310 0.88044 0.86259 0.96388 1.84702 1.75308 1.34935 1.35631 0.89106 0.89789 0.90613 0.81515 0.85952 0.86736 0.86291 0.90593 0.90501 0.90090 0.91390 0.90483 0.91208 0.91580 0.93757 0.92058 0.92145 0.93375 0.91476 0.92229 0.93598 0.92422 0.90254 0.87536 0.86171 0.88079 0.76912 0.72262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.95 9.79 71.24 0.70 1.65 16 2 C -0.11 0.36 5.89 -19.81 -0.12 0.24 16 3 C -0.07 0.12 8.77 22.51 0.20 0.31 16 4 C -0.15 -0.83 5.88 -20.08 -0.12 -0.95 16 5 C 0.59 5.56 8.00 86.72 0.69 6.26 16 6 O -0.58 -10.87 17.14 -3.98 -0.07 -10.94 16 7 N -0.64 -1.16 3.66 -862.10 -3.16 -4.32 16 8 C 0.07 -0.49 5.97 83.27 0.50 0.01 16 9 C 0.08 -0.50 3.92 31.01 0.12 -0.38 16 10 O -0.61 3.42 8.61 -148.98 -1.28 2.13 16 11 Si 1.32 -9.26 8.24 68.60 0.57 -8.70 16 12 C -0.51 4.15 8.65 113.37 0.98 5.13 16 13 C -0.53 2.33 8.64 113.37 0.98 3.31 16 14 C -0.38 1.52 0.53 -10.80 -0.01 1.52 16 15 C -0.14 0.51 7.85 71.98 0.56 1.08 16 16 C -0.14 0.55 7.85 71.98 0.56 1.12 16 17 C -0.14 0.27 7.85 71.98 0.56 0.84 16 18 C 0.09 -0.07 8.45 83.18 0.70 0.63 16 19 C -0.08 -0.59 8.20 22.51 0.18 -0.40 16 20 C -0.15 -0.44 5.27 -19.81 -0.10 -0.54 16 21 C -0.07 -0.12 2.33 71.24 0.17 0.05 16 22 O -0.54 -0.30 12.65 -148.98 -1.89 -2.18 16 23 Si 1.01 6.12 25.74 68.60 1.77 7.89 16 24 H -0.28 -2.91 6.73 99.48 0.67 -2.24 16 25 H -0.26 -1.71 7.11 99.48 0.71 -1.00 16 26 H -0.25 -1.80 7.11 99.48 0.71 -1.09 16 27 C 0.16 -0.23 6.62 22.63 0.15 -0.08 16 28 O -0.49 2.98 11.52 -90.29 -1.04 1.94 16 29 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 30 H 0.08 -0.88 8.08 -2.39 -0.02 -0.90 16 31 H 0.07 -0.55 7.52 -2.38 -0.02 -0.56 16 32 H 0.17 -1.26 4.17 -2.91 -0.01 -1.28 16 33 H 0.12 -1.22 8.13 -2.39 -0.02 -1.24 16 34 H 0.11 -1.33 6.74 -2.39 -0.02 -1.34 16 35 H 0.12 -1.04 6.50 -2.39 -0.02 -1.06 16 36 H 0.07 -0.71 7.96 -2.38 -0.02 -0.73 16 37 H 0.08 -0.58 7.79 -2.38 -0.02 -0.60 16 38 H 0.08 -0.71 7.79 -2.39 -0.02 -0.73 16 39 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 40 H 0.08 -0.35 7.79 -2.39 -0.02 -0.37 16 41 H 0.07 -0.35 7.31 -2.39 -0.02 -0.37 16 42 H 0.07 -0.39 7.80 -2.39 -0.02 -0.41 16 43 H 0.04 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.06 -0.24 7.96 -2.39 -0.02 -0.26 16 45 H 0.06 -0.29 7.79 -2.39 -0.02 -0.30 16 46 H 0.05 -0.10 8.14 -2.38 -0.02 -0.12 16 47 H 0.07 -0.40 7.79 -2.39 -0.02 -0.42 16 48 H 0.06 -0.11 7.97 -2.39 -0.02 -0.13 16 49 H 0.04 -0.02 8.14 -2.39 -0.02 -0.04 16 50 H 0.06 -0.15 7.79 -2.39 -0.02 -0.17 16 51 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 52 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 53 H 0.12 1.36 4.48 -2.91 -0.01 1.35 16 54 H 0.10 -0.16 7.82 -2.39 -0.02 -0.18 16 55 H 0.38 -3.26 8.20 -74.06 -0.61 -3.87 16 56 H 0.42 -6.57 8.56 -74.06 -0.63 -7.20 16 Total: 0.00 -23.19 441.54 1.99 -21.20 By element: Atomic # 1 Polarization: -27.19 SS G_CDS: 0.37 Total: -26.82 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 6.72 Total: 19.80 kcal Atomic # 7 Polarization: -1.16 SS G_CDS: -3.16 Total: -4.32 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -4.28 Total: -9.05 kcal Atomic # 14 Polarization: -3.14 SS G_CDS: 2.33 Total: -0.81 kcal Total: -23.19 1.99 -21.20 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_13287732.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.083 kcal (2) G-P(sol) polarization free energy of solvation -23.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds