Wall clock time and date at job start Tue Mar 9 2021 13:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47110 * 2 1 4 4 C 1.52999 * 109.47166 * 239.99749 * 2 1 3 5 5 Si 1.86300 * 109.46945 * 119.99652 * 2 1 3 6 6 C 1.86297 * 109.47267 * 300.00452 * 5 2 1 7 7 C 1.86298 * 109.47297 * 179.97438 * 5 2 1 8 8 O 1.63102 * 109.47059 * 60.00081 * 5 2 1 9 9 C 1.42902 * 114.00217 * 179.97438 * 8 5 2 10 10 C 1.53497 * 114.20916 * 209.99986 * 9 8 5 11 11 N 1.47063 * 87.98654 * 220.34854 * 10 9 8 12 12 C 1.34779 * 136.05980 * 207.08844 * 11 10 9 13 13 O 1.21591 * 119.99526 * 5.42500 * 12 11 10 14 14 C 1.47534 * 119.99977 * 185.42797 * 12 11 10 15 15 C 1.39664 * 120.19535 * 24.40845 * 14 12 11 16 16 C 1.37832 * 119.90787 * 180.25391 * 15 14 12 17 17 C 1.38499 * 120.30153 * 359.71857 * 16 15 14 18 18 C 1.50700 * 119.80773 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.46796 * 120.02260 * 18 17 16 20 20 Si 1.86301 * 109.46733 * 0.02951 * 18 17 16 21 21 H 1.48499 * 109.47246 * 299.99108 * 20 18 17 22 22 H 1.48497 * 109.47560 * 59.99904 * 20 18 17 23 23 H 1.48505 * 109.46913 * 179.97438 * 20 18 17 24 24 C 1.38099 * 120.39073 * 0.04851 * 17 16 15 25 25 C 1.38665 * 120.08066 * 359.95516 * 24 17 16 26 26 O 1.35663 * 120.14883 * 180.02562 * 25 24 17 27 27 C 1.47065 * 87.88633 * 27.34310 * 11 10 9 28 28 H 1.08998 * 109.47532 * 299.99985 * 1 2 3 29 29 H 1.09004 * 109.47177 * 60.00419 * 1 2 3 30 30 H 1.09001 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47200 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47264 * 299.99907 * 3 2 1 33 33 H 1.09005 * 109.47254 * 59.99864 * 3 2 1 34 34 H 1.08993 * 109.47209 * 299.99916 * 4 2 1 35 35 H 1.08995 * 109.47275 * 60.00482 * 4 2 1 36 36 H 1.09004 * 109.46835 * 180.02562 * 4 2 1 37 37 H 1.09004 * 109.47210 * 180.02562 * 6 5 2 38 38 H 1.09001 * 109.47068 * 299.99745 * 6 5 2 39 39 H 1.08992 * 109.47502 * 59.99888 * 6 5 2 40 40 H 1.08998 * 109.47487 * 300.00551 * 7 5 2 41 41 H 1.09001 * 109.46769 * 60.00419 * 7 5 2 42 42 H 1.09004 * 109.47529 * 179.97438 * 7 5 2 43 43 H 1.08996 * 113.41381 * 343.21129 * 9 8 5 44 44 H 1.09001 * 113.46132 * 105.56833 * 10 9 8 45 45 H 1.09001 * 113.46775 * 335.12716 * 10 9 8 46 46 H 1.08004 * 120.04709 * 0.02562 * 15 14 12 47 47 H 1.08003 * 119.85190 * 179.74548 * 16 15 14 48 48 H 1.09000 * 109.47302 * 240.02783 * 18 17 16 49 49 H 0.96701 * 113.99636 * 180.02562 * 19 18 17 50 50 H 1.07996 * 119.96264 * 179.97438 * 24 17 16 51 51 H 0.96697 * 114.00217 * 89.99744 * 26 25 24 52 52 H 1.09003 * 113.46735 * 87.43358 * 27 11 10 53 53 H 1.08998 * 113.47030 * 217.87737 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8781 1.5212 6 6 1.5298 0.0001 3.0423 7 6 4.0139 -0.8789 1.5209 8 8 1.6073 -2.4159 1.5213 9 6 2.0293 -3.1816 2.6516 10 6 2.1848 -4.6829 2.3722 11 7 1.5824 -4.9376 3.6895 12 6 1.6440 -5.9187 4.6115 13 8 2.4169 -6.8454 4.4623 14 6 0.7736 -5.8681 5.8017 15 6 -0.4249 -5.1521 5.7655 16 6 -1.2310 -5.1045 6.8826 17 6 -0.8609 -5.7687 8.0402 18 6 -1.7510 -5.7097 9.2548 19 8 -2.1602 -7.0320 9.6101 20 14 -3.2534 -4.6759 8.8740 21 1 -2.8281 -3.3018 8.5049 22 1 -3.9991 -5.2840 7.7430 23 1 -4.1308 -4.6183 10.0708 24 6 0.3192 -6.4844 8.0881 25 6 1.1423 -6.5430 6.9737 26 8 2.3016 -7.2460 7.0192 27 6 0.8781 -3.6535 3.5550 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6768 -0.2075 -2.1392 36 1 3.1301 -0.7217 -1.2489 37 1 1.8935 -0.5135 3.9323 38 1 1.8932 1.0277 3.0423 39 1 0.4399 0.0001 3.0423 40 1 4.3770 -1.3929 0.6310 41 1 4.3776 0.1487 1.5207 42 1 4.3773 -1.3923 2.4112 43 1 2.8684 -2.7373 3.1868 44 1 3.2234 -5.0057 2.3002 45 1 1.5746 -5.0352 1.5405 46 1 -0.7180 -4.6333 4.8647 47 1 -2.1557 -4.5471 6.8549 48 1 -1.2036 -5.2633 10.0850 49 1 -2.7372 -7.0702 10.3852 50 1 0.6012 -6.9994 8.9945 51 1 2.2108 -8.1718 6.7550 52 1 -0.0765 -3.7344 3.0350 53 1 0.8035 -3.0993 4.4906 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_13422076.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:46:12 Heat of formation + Delta-G solvation = -129.702782 kcal Electronic energy + Delta-G solvation = -31805.255195 eV Core-core repulsion = 27574.329705 eV Total energy + Delta-G solvation = -4230.925490 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.182 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.95524 -40.77615 -39.15036 -38.29113 -37.20854 -36.79455 -36.48369 -33.19466 -31.17984 -30.11541 -29.29637 -29.02753 -27.80633 -27.46600 -27.29551 -26.88562 -23.88599 -23.69632 -22.39347 -20.67843 -20.35106 -19.04550 -18.68372 -18.48908 -18.37564 -17.76500 -16.86459 -16.70752 -16.27641 -16.12693 -15.95485 -15.75404 -15.42162 -15.06604 -14.84881 -14.75685 -14.64397 -14.57598 -14.39969 -14.16682 -13.92431 -13.77395 -13.53076 -13.37937 -13.34620 -13.16280 -13.06505 -12.99434 -12.90956 -12.88142 -12.79179 -12.55727 -12.34264 -12.12171 -11.97075 -11.73912 -11.66355 -11.62496 -11.49059 -11.28446 -11.04481 -10.44642 -10.29833 -10.05677 -10.03226 -9.93336 -9.74378 -0.43397 0.10601 1.15479 1.22996 1.49729 1.53618 1.61225 1.79858 1.83685 1.94050 2.11951 2.43763 2.49678 3.10075 3.14349 3.24719 3.40648 3.64317 3.80262 3.83028 4.04577 4.05831 4.16303 4.16897 4.23727 4.30082 4.34292 4.43246 4.50542 4.57275 4.59626 4.63474 4.67878 4.75786 4.78248 4.80271 4.84980 4.86034 4.86620 4.89149 4.97700 5.05112 5.13667 5.13943 5.14888 5.22009 5.25327 5.38906 5.46257 5.47345 5.53314 5.55378 5.62810 5.70336 6.49222 6.65107 6.79622 6.92532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.382 4.382 3 C -0.142 4.142 4 C -0.139 4.139 5 Si 1.322 2.678 6 C -0.516 4.516 7 C -0.525 4.525 8 O -0.609 6.609 9 C 0.083 3.917 10 C 0.093 3.907 11 N -0.645 5.645 12 C 0.591 3.409 13 O -0.568 6.568 14 C -0.176 4.176 15 C -0.057 4.057 16 C -0.145 4.145 17 C -0.036 4.036 18 C -0.092 4.092 19 O -0.562 6.562 20 Si 0.980 3.020 21 H -0.246 1.246 22 H -0.265 1.265 23 H -0.257 1.257 24 C -0.131 4.131 25 C 0.153 3.847 26 O -0.500 6.500 27 C 0.073 3.927 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.107 0.893 46 H 0.161 0.839 47 H 0.149 0.851 48 H 0.101 0.899 49 H 0.401 0.599 50 H 0.145 0.855 51 H 0.410 0.590 52 H 0.122 0.878 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.858 5.550 2.109 7.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.425 4.425 3 C -0.199 4.199 4 C -0.196 4.196 5 Si 1.452 2.548 6 C -0.618 4.618 7 C -0.626 4.626 8 O -0.567 6.567 9 C 0.025 3.975 10 C -0.029 4.029 11 N -0.381 5.381 12 C 0.383 3.617 13 O -0.448 6.448 14 C -0.180 4.180 15 C -0.075 4.075 16 C -0.163 4.163 17 C -0.037 4.037 18 C -0.202 4.202 19 O -0.372 6.372 20 Si 0.803 3.197 21 H -0.170 1.170 22 H -0.189 1.189 23 H -0.181 1.181 24 C -0.150 4.150 25 C 0.107 3.893 26 O -0.314 6.314 27 C -0.049 4.049 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.133 0.867 44 H 0.096 0.904 45 H 0.125 0.875 46 H 0.178 0.822 47 H 0.166 0.834 48 H 0.119 0.881 49 H 0.252 0.748 50 H 0.162 0.838 51 H 0.270 0.730 52 H 0.140 0.860 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.700 5.577 1.499 7.446 hybrid contribution 0.449 -0.451 0.238 0.679 sum -4.252 5.127 1.737 6.883 Atomic orbital electron populations 1.21555 0.93894 1.02080 1.01923 1.25937 1.00687 1.02822 1.13027 1.21615 1.01150 0.94907 1.02267 1.21561 1.00899 1.00213 0.96934 0.76157 0.61881 0.52455 0.64347 1.27086 1.07472 1.09728 1.17514 1.27224 1.26002 1.04932 1.04437 1.85414 1.78577 1.46622 1.46049 1.23314 0.97012 0.90936 0.86248 1.23463 1.00465 0.93728 0.85267 1.49079 1.48302 1.21412 1.19331 1.17737 0.82007 0.80050 0.81889 1.90774 1.40606 1.35260 1.78136 1.20297 0.97971 1.06042 0.93677 1.21502 0.91345 0.95178 0.99507 1.21192 1.01061 1.01695 0.92338 1.19693 0.93991 0.95128 0.94849 1.24958 1.05810 0.91792 0.97600 1.86454 1.71632 1.25629 1.53469 0.85254 0.75811 0.78095 0.80565 1.16995 1.18914 1.18140 1.21336 0.93585 1.01101 0.98953 1.18685 0.85507 0.93482 0.91632 1.84641 1.28552 1.28386 1.89814 1.24061 0.98518 0.81083 1.01229 0.91720 0.93652 0.92035 0.92100 0.93274 0.91589 0.92191 0.93514 0.92385 0.90865 0.90507 0.90236 0.91247 0.90460 0.91324 0.86673 0.90373 0.87469 0.82178 0.83360 0.88110 0.74825 0.83767 0.72973 0.86047 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.41 7.85 71.98 0.56 0.97 16 2 C -0.38 1.24 0.53 -10.79 -0.01 1.23 16 3 C -0.14 0.46 7.85 71.98 0.56 1.02 16 4 C -0.14 0.21 7.85 71.98 0.56 0.78 16 5 Si 1.32 -7.68 8.24 68.60 0.57 -7.12 16 6 C -0.52 3.22 8.65 113.37 0.98 4.20 16 7 C -0.53 1.81 8.64 113.37 0.98 2.79 16 8 O -0.61 2.71 8.61 -148.98 -1.28 1.43 16 9 C 0.08 -0.37 3.92 31.02 0.12 -0.24 16 10 C 0.09 -0.01 8.45 83.18 0.70 0.69 16 11 N -0.65 -1.67 3.64 -862.16 -3.14 -4.81 16 12 C 0.59 5.58 7.79 86.69 0.68 6.26 16 13 O -0.57 -9.78 16.33 15.39 0.25 -9.53 16 14 C -0.18 -1.04 5.84 -20.01 -0.12 -1.16 16 15 C -0.06 0.01 8.84 22.52 0.20 0.21 16 16 C -0.15 0.15 8.65 22.24 0.19 0.34 16 17 C -0.04 -0.03 5.43 -19.83 -0.11 -0.14 16 18 C -0.09 0.35 2.81 71.24 0.20 0.55 16 19 O -0.56 1.30 12.74 -148.98 -1.90 -0.59 16 20 Si 0.98 -4.96 25.05 68.60 1.72 -3.24 16 21 H -0.25 1.29 7.11 99.48 0.71 2.00 16 22 H -0.26 0.49 7.11 99.48 0.71 1.19 16 23 H -0.26 1.18 7.11 99.48 0.71 1.88 16 24 C -0.13 -0.48 9.53 22.34 0.21 -0.27 16 25 C 0.15 1.08 6.69 22.84 0.15 1.24 16 26 O -0.50 -4.51 11.87 -70.40 -0.84 -5.34 16 27 C 0.07 -0.39 5.96 83.27 0.50 0.11 16 28 H 0.06 -0.32 7.79 -2.39 -0.02 -0.34 16 29 H 0.04 -0.06 8.14 -2.39 -0.02 -0.07 16 30 H 0.06 -0.20 7.97 -2.39 -0.02 -0.22 16 31 H 0.06 -0.25 7.79 -2.38 -0.02 -0.27 16 32 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.07 -0.33 7.79 -2.38 -0.02 -0.35 16 34 H 0.06 -0.09 7.96 -2.39 -0.02 -0.11 16 35 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.06 -0.13 7.79 -2.38 -0.02 -0.15 16 37 H 0.07 -0.51 7.96 -2.39 -0.02 -0.53 16 38 H 0.08 -0.46 7.79 -2.39 -0.02 -0.48 16 39 H 0.08 -0.54 7.79 -2.39 -0.02 -0.56 16 40 H 0.07 -0.16 7.79 -2.39 -0.02 -0.18 16 41 H 0.08 -0.29 7.79 -2.39 -0.02 -0.31 16 42 H 0.07 -0.26 7.31 -2.39 -0.02 -0.27 16 43 H 0.12 -0.78 6.50 -2.39 -0.02 -0.79 16 44 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 46 H 0.16 -0.92 5.67 -2.91 -0.02 -0.94 16 47 H 0.15 -0.79 4.85 -2.91 -0.01 -0.81 16 48 H 0.10 -0.77 7.96 -2.39 -0.02 -0.79 16 49 H 0.40 -4.51 8.74 -74.06 -0.65 -5.15 16 50 H 0.14 0.32 8.06 -2.91 -0.02 0.30 16 51 H 0.41 1.27 9.06 -74.06 -0.67 0.60 16 52 H 0.12 -1.08 7.92 -2.39 -0.02 -1.09 16 53 H 0.11 -0.91 7.75 -2.39 -0.02 -0.93 16 Total: 0.00 -21.32 423.81 2.11 -19.21 By element: Atomic # 1 Polarization: -8.94 SS G_CDS: 0.36 Total: -8.59 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 6.38 Total: 18.59 kcal Atomic # 7 Polarization: -1.67 SS G_CDS: -3.14 Total: -4.81 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -3.76 Total: -14.04 kcal Atomic # 14 Polarization: -12.64 SS G_CDS: 2.28 Total: -10.36 kcal Total: -21.32 2.11 -19.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_13422076.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.494 kcal (2) G-P(sol) polarization free energy of solvation -21.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds