Wall clock time and date at job start Tue Mar 9 2021 13:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37872 * 126.45690 * 2 1 4 4 C 1.46679 * 126.22973 * 359.97438 * 3 2 1 5 5 O 1.21693 * 120.00225 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99491 * 179.97438 * 4 3 2 7 7 C 1.47057 * 136.05968 * 359.63569 * 6 4 3 8 8 C 1.53756 * 87.89130 * 152.96133 * 7 6 4 9 9 O 1.42898 * 114.09115 * 139.78056 * 8 7 6 10 10 Si 1.63098 * 114.00255 * 116.55737 * 9 8 7 11 11 C 1.86295 * 109.47390 * 300.00081 * 10 9 8 12 12 C 1.86310 * 109.46876 * 59.99978 * 10 9 8 13 13 C 1.86294 * 109.47296 * 179.97438 * 10 9 8 14 14 C 1.52997 * 109.47032 * 59.99865 * 13 10 9 15 15 C 1.52999 * 109.47430 * 180.02562 * 13 10 9 16 16 C 1.53011 * 109.47194 * 300.00235 * 13 10 9 17 17 C 1.47070 * 136.05239 * 179.97438 * 6 4 3 18 18 N 1.37650 * 107.53522 * 179.97438 * 3 2 1 19 19 C 1.35539 * 108.64163 * 359.76036 * 18 3 2 20 20 C 1.50698 * 125.56491 * 180.28416 * 19 18 3 21 21 O 1.42899 * 109.47105 * 300.15775 * 20 19 18 22 22 Si 1.86296 * 109.47303 * 180.15205 * 20 19 18 23 23 H 1.48502 * 109.46998 * 60.00232 * 22 20 19 24 24 H 1.48497 * 109.47383 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47268 * 300.00298 * 22 20 19 26 26 C 1.35452 * 108.87236 * 0.39692 * 19 18 3 27 27 H 1.08993 * 109.47500 * 269.97724 * 1 2 3 28 28 H 1.09004 * 109.47275 * 29.97871 * 1 2 3 29 29 H 1.09008 * 109.47165 * 149.97781 * 1 2 3 30 30 H 1.09009 * 113.46726 * 267.69002 * 7 6 4 31 31 H 1.08998 * 113.47169 * 38.12928 * 7 6 4 32 32 H 1.09008 * 114.39022 * 272.67386 * 8 7 6 33 33 H 1.09005 * 109.47240 * 59.99388 * 11 10 9 34 34 H 1.08994 * 109.47520 * 179.97438 * 11 10 9 35 35 H 1.09001 * 109.47413 * 300.00207 * 11 10 9 36 36 H 1.08999 * 109.46680 * 60.00410 * 12 10 9 37 37 H 1.09004 * 109.46609 * 179.97438 * 12 10 9 38 38 H 1.08997 * 109.47056 * 300.00045 * 12 10 9 39 39 H 1.08997 * 109.47084 * 60.00480 * 14 13 10 40 40 H 1.09005 * 109.47616 * 179.97438 * 14 13 10 41 41 H 1.08994 * 109.47315 * 299.99965 * 14 13 10 42 42 H 1.08999 * 109.46955 * 59.99970 * 15 13 10 43 43 H 1.08997 * 109.47449 * 179.97438 * 15 13 10 44 44 H 1.08997 * 109.47032 * 299.99732 * 15 13 10 45 45 H 1.08999 * 109.46904 * 59.99727 * 16 13 10 46 46 H 1.08997 * 109.47207 * 180.02562 * 16 13 10 47 47 H 1.08993 * 109.46888 * 299.99718 * 16 13 10 48 48 H 1.08995 * 113.47176 * 321.86850 * 17 6 4 49 49 H 1.08999 * 113.46639 * 92.31064 * 17 6 4 50 50 H 0.96993 * 125.67650 * 179.97438 * 18 3 2 51 51 H 1.09002 * 109.46699 * 60.15290 * 20 19 18 52 52 H 0.96702 * 113.99586 * 299.99969 * 21 20 19 53 53 H 1.08002 * 126.07027 * 179.87463 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8897 2.5092 -0.0005 5 8 0.7025 2.7765 -0.0015 6 7 2.8036 3.4999 0.0001 7 6 4.2716 3.5863 0.0077 8 6 4.1386 4.9461 -0.6976 9 8 5.0534 5.9385 -0.2284 10 14 6.1133 6.4505 -1.3573 11 6 7.1277 5.0075 -1.9566 12 6 5.1834 7.1938 -2.7904 13 6 7.2390 7.7358 -0.6147 14 6 8.0026 7.1261 0.5625 15 6 8.2329 8.2166 -1.6739 16 6 6.4055 8.9210 -0.1229 17 6 2.7714 4.9702 -0.0006 18 7 3.6284 0.6625 0.0006 19 6 3.6218 -0.6928 0.0063 20 6 4.8433 -1.5753 0.0149 21 8 5.6304 -1.3105 -1.1480 22 14 4.3182 -3.3627 0.0158 23 1 3.5138 -3.6428 -1.2007 24 1 5.5219 -4.2323 0.0236 25 1 3.5003 -3.6378 1.2242 26 6 2.3379 -1.1247 0.0005 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5142 30 1 4.6972 3.6565 1.0088 31 1 4.7546 2.8240 -0.6036 32 1 4.0848 4.8860 -1.7847 33 1 6.4688 4.2557 -2.3912 34 1 7.8357 5.3495 -2.7114 35 1 7.6718 4.5726 -1.1182 36 1 4.5900 8.0381 -2.4397 37 1 5.8918 7.5364 -3.5447 38 1 4.5245 6.4421 -3.2250 39 1 8.5965 6.2818 0.2122 40 1 8.6616 7.8779 0.9968 41 1 7.2943 6.7839 1.3170 42 1 7.6885 8.6512 -2.5122 43 1 8.8912 8.9690 -1.2395 44 1 8.8268 7.3726 -2.0245 45 1 5.6971 8.5787 0.6316 46 1 7.0641 9.6732 0.3112 47 1 5.8615 9.3554 -0.9615 48 1 1.9763 5.3868 -0.6190 49 1 2.8011 5.4055 0.9983 50 1 4.4190 1.2244 0.0004 51 1 5.4338 -1.3696 0.9078 52 1 5.1674 -1.4722 -1.9814 53 1 2.0136 -2.1549 0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_13940406.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:54:41 Heat of formation + Delta-G solvation = -78.465102 kcal Electronic energy + Delta-G solvation = -30545.357327 eV Core-core repulsion = 26542.598471 eV Total energy + Delta-G solvation = -4002.758855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.72598 -41.30797 -39.25789 -37.69610 -36.81952 -36.61294 -33.68026 -32.06746 -30.16870 -29.32363 -29.05361 -28.20287 -27.82689 -27.43691 -27.20913 -26.46787 -23.37842 -21.68261 -21.49828 -20.38209 -20.18309 -19.10960 -18.46338 -18.13240 -17.37002 -16.78480 -16.37894 -16.15907 -16.03939 -15.67304 -15.42897 -15.29529 -14.87291 -14.82275 -14.76823 -14.57549 -14.30951 -14.17626 -13.92962 -13.89956 -13.64841 -13.60225 -13.57832 -13.37415 -13.19336 -13.13557 -13.03751 -12.93204 -12.91327 -12.85408 -12.36729 -12.24243 -12.09887 -11.79884 -11.77751 -11.68934 -11.53388 -11.34952 -11.20262 -10.65539 -10.34665 -10.08374 -10.02914 -9.87686 -9.22674 0.23126 1.08973 1.19238 1.45021 1.57708 1.63075 1.74244 1.76474 1.92496 2.08707 2.14724 2.19217 2.45427 3.10021 3.33067 3.46887 3.56597 3.72116 3.92986 4.04445 4.06479 4.14110 4.14569 4.23256 4.39122 4.43471 4.50096 4.52752 4.54967 4.59894 4.65650 4.74513 4.78598 4.80082 4.81906 4.82785 4.84418 4.85241 4.86132 5.02950 5.11732 5.11890 5.12531 5.22643 5.27691 5.36310 5.43035 5.44009 5.49675 5.60151 5.61369 5.67364 5.80548 6.30619 6.42703 6.60119 6.88629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.083 4.083 3 C -0.067 4.067 4 C 0.617 3.383 5 O -0.562 6.562 6 N -0.651 5.651 7 C 0.070 3.930 8 C 0.089 3.911 9 O -0.610 6.610 10 Si 1.323 2.677 11 C -0.516 4.516 12 C -0.524 4.524 13 C -0.383 4.383 14 C -0.138 4.138 15 C -0.142 4.142 16 C -0.139 4.139 17 C 0.095 3.905 18 N -0.513 5.513 19 C 0.036 3.964 20 C -0.062 4.062 21 O -0.550 6.550 22 Si 1.009 2.991 23 H -0.252 1.252 24 H -0.269 1.269 25 H -0.258 1.258 26 C -0.218 4.218 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.045 0.955 47 H 0.059 0.941 48 H 0.085 0.915 49 H 0.104 0.896 50 H 0.426 0.574 51 H 0.135 0.865 52 H 0.393 0.607 53 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 -1.273 -1.518 5.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.180 4.180 4 C 0.410 3.590 5 O -0.441 6.441 6 N -0.388 5.388 7 C -0.053 4.053 8 C 0.030 3.970 9 O -0.567 6.567 10 Si 1.453 2.547 11 C -0.619 4.619 12 C -0.625 4.625 13 C -0.426 4.426 14 C -0.195 4.195 15 C -0.199 4.199 16 C -0.196 4.196 17 C -0.027 4.027 18 N -0.112 5.112 19 C -0.083 4.083 20 C -0.172 4.172 21 O -0.357 6.357 22 Si 0.831 3.169 23 H -0.175 1.175 24 H -0.194 1.194 25 H -0.182 1.182 26 C -0.242 4.242 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.135 0.865 31 H 0.114 0.886 32 H 0.138 0.862 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.103 0.897 49 H 0.122 0.878 50 H 0.268 0.732 51 H 0.153 0.847 52 H 0.243 0.757 53 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.883 -1.780 -0.806 5.260 hybrid contribution 0.217 1.086 -0.588 1.254 sum 5.100 -0.694 -1.394 5.333 Atomic orbital electron populations 1.20352 0.89108 1.02959 1.02405 1.20155 0.96342 0.91118 1.01523 1.19980 0.84690 0.92397 1.20961 1.16623 0.84044 0.82593 0.75734 1.90826 1.16929 1.83352 1.52970 1.49141 1.08580 1.07768 1.73295 1.24009 0.79619 0.97910 1.03740 1.23275 0.88934 0.86664 0.98091 1.85426 1.53233 1.56452 1.61632 0.76137 0.59025 0.63543 0.56003 1.27100 1.11212 1.16323 1.07237 1.27197 1.09743 1.08177 1.17373 1.25959 1.06233 1.08752 1.01628 1.21556 0.99973 1.00571 0.97397 1.21613 0.98757 1.01497 0.98073 1.21564 0.99464 0.97378 1.01208 1.23444 0.97464 0.78881 1.02937 1.42108 1.06858 1.06764 1.55519 1.21409 0.97217 0.83500 1.06194 1.24959 0.91191 1.08318 0.92763 1.86487 1.41724 1.91196 1.16280 0.84787 0.78843 0.71711 0.81534 1.17549 1.19383 1.18205 1.20812 0.91238 0.99371 1.12760 0.91365 0.91980 0.90088 0.86536 0.88580 0.86160 0.90831 0.90403 0.90455 0.91155 0.90387 0.91132 0.91795 0.93631 0.92157 0.91976 0.93299 0.91616 0.92239 0.93539 0.92249 0.89686 0.87780 0.73206 0.84711 0.75746 0.82372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 9.83 71.24 0.70 0.14 16 2 C -0.08 -0.53 6.21 -19.56 -0.12 -0.65 16 3 C -0.07 -0.39 7.02 40.35 0.28 -0.11 16 4 C 0.62 5.41 8.04 86.45 0.69 6.10 16 5 O -0.56 -9.10 15.58 -4.33 -0.07 -9.17 16 6 N -0.65 -1.21 3.69 -863.14 -3.18 -4.39 16 7 C 0.07 -0.39 7.18 83.27 0.60 0.21 16 8 C 0.09 -0.47 3.92 31.01 0.12 -0.35 16 9 O -0.61 3.00 8.61 -148.98 -1.28 1.72 16 10 Si 1.32 -8.49 8.24 68.60 0.57 -7.93 16 11 C -0.52 3.45 8.65 113.37 0.98 4.43 16 12 C -0.52 2.36 8.64 113.37 0.98 3.34 16 13 C -0.38 1.32 0.53 -10.79 -0.01 1.32 16 14 C -0.14 0.39 7.85 71.98 0.56 0.95 16 15 C -0.14 0.49 7.85 71.98 0.56 1.06 16 16 C -0.14 0.25 7.85 71.99 0.56 0.81 16 17 C 0.09 -0.09 8.45 83.17 0.70 0.61 16 18 N -0.51 0.17 5.91 -171.93 -1.02 -0.84 16 19 C 0.04 -0.03 6.47 41.34 0.27 0.23 16 20 C -0.06 0.33 3.08 71.24 0.22 0.54 16 21 O -0.55 2.67 12.88 -148.98 -1.92 0.75 16 22 Si 1.01 -4.56 25.83 68.60 1.77 -2.79 16 23 H -0.25 0.94 7.11 99.48 0.71 1.65 16 24 H -0.27 0.44 7.11 99.48 0.71 1.15 16 25 H -0.26 0.65 7.11 99.48 0.71 1.36 16 26 C -0.22 -0.42 9.27 22.01 0.20 -0.21 16 27 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.06 0.64 6.48 -2.38 -0.02 0.62 16 29 H 0.08 0.18 8.14 -2.38 -0.02 0.16 16 30 H 0.12 -0.89 8.14 -2.38 -0.02 -0.91 16 31 H 0.10 -0.91 6.39 -2.39 -0.02 -0.93 16 32 H 0.12 -1.02 6.50 -2.38 -0.02 -1.03 16 33 H 0.07 -0.57 7.96 -2.38 -0.02 -0.59 16 34 H 0.08 -0.50 7.79 -2.39 -0.02 -0.51 16 35 H 0.08 -0.52 7.79 -2.39 -0.02 -0.54 16 36 H 0.07 -0.23 7.79 -2.39 -0.02 -0.25 16 37 H 0.08 -0.36 7.79 -2.38 -0.02 -0.38 16 38 H 0.07 -0.37 7.31 -2.39 -0.02 -0.38 16 39 H 0.06 -0.30 7.80 -2.39 -0.02 -0.32 16 40 H 0.04 -0.05 8.14 -2.38 -0.02 -0.07 16 41 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 42 H 0.06 -0.28 7.79 -2.39 -0.02 -0.30 16 43 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.06 -0.34 7.80 -2.39 -0.02 -0.36 16 45 H 0.06 -0.10 7.96 -2.39 -0.02 -0.12 16 46 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 47 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 48 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 49 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16 50 H 0.43 -2.13 5.86 -92.71 -0.54 -2.67 16 51 H 0.14 -1.06 7.96 -2.39 -0.02 -1.08 16 52 H 0.39 -4.03 8.70 -74.06 -0.64 -4.68 16 53 H 0.16 -0.23 6.17 -2.91 -0.02 -0.25 16 Total: 0.00 -17.70 419.62 2.66 -15.04 By element: Atomic # 1 Polarization: -11.28 SS G_CDS: 0.47 Total: -10.81 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 7.32 Total: 18.42 kcal Atomic # 7 Polarization: -1.04 SS G_CDS: -4.20 Total: -5.24 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: -3.27 Total: -6.70 kcal Atomic # 14 Polarization: -13.06 SS G_CDS: 2.34 Total: -10.72 kcal Total: -17.70 2.66 -15.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_13940406.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.425 kcal (2) G-P(sol) polarization free energy of solvation -17.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds