Wall clock time and date at job start Tue Mar 9 2021 13:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46808 * 2 1 4 4 C 1.53001 * 109.47349 * 240.00038 * 2 1 3 5 5 Si 1.86300 * 109.47444 * 119.99898 * 2 1 3 6 6 C 1.86306 * 109.47140 * 300.00397 * 5 2 1 7 7 C 1.86293 * 109.47447 * 180.02562 * 5 2 1 8 8 O 1.63098 * 109.47132 * 60.00195 * 5 2 1 9 9 C 1.42898 * 114.00229 * 180.02562 * 8 5 2 10 10 C 1.53950 * 113.74250 * 111.26071 * 9 8 5 11 11 N 1.47925 * 85.99684 * 138.00445 * 10 9 8 12 12 C 1.34780 * 134.49772 * 155.35643 * 11 10 9 13 13 O 1.21284 * 119.99485 * 179.97438 * 12 11 10 14 14 C 1.50693 * 120.00205 * 0.02562 * 12 11 10 15 15 C 1.50697 * 109.47182 * 180.02562 * 14 12 11 16 16 C 1.34851 * 125.89058 * 85.02354 * 15 14 12 17 17 C 1.40897 * 107.41494 * 180.02562 * 16 15 14 18 18 C 1.34852 * 107.41878 * 359.97438 * 17 16 15 19 19 C 1.50702 * 125.89104 * 180.02562 * 18 17 16 20 20 O 1.42900 * 109.47307 * 119.97233 * 19 18 17 21 21 Si 1.86299 * 109.46907 * 359.97064 * 19 18 17 22 22 H 1.48498 * 109.47042 * 180.02562 * 21 19 18 23 23 H 1.48499 * 109.47382 * 300.00417 * 21 19 18 24 24 H 1.48505 * 109.47255 * 60.00370 * 21 19 18 25 25 N 1.36340 * 108.21625 * 359.73794 * 18 17 16 26 26 C 1.47579 * 91.00789 * 335.35638 * 11 10 9 27 27 H 1.09000 * 109.47305 * 299.99583 * 1 2 3 28 28 H 1.09000 * 109.47044 * 60.00231 * 1 2 3 29 29 H 1.09003 * 109.46860 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46899 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47130 * 299.99716 * 3 2 1 32 32 H 1.09003 * 109.47140 * 60.00570 * 3 2 1 33 33 H 1.09003 * 109.47101 * 299.99805 * 4 2 1 34 34 H 1.08999 * 109.46750 * 59.99769 * 4 2 1 35 35 H 1.09004 * 109.47312 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.46929 * 179.97438 * 6 5 2 37 37 H 1.09000 * 109.46530 * 299.99611 * 6 5 2 38 38 H 1.08998 * 109.46827 * 59.99683 * 6 5 2 39 39 H 1.09000 * 109.47192 * 300.00451 * 7 5 2 40 40 H 1.09003 * 109.46971 * 60.00024 * 7 5 2 41 41 H 1.09004 * 109.47745 * 179.97438 * 7 5 2 42 42 H 1.09002 * 112.94238 * 339.66639 * 9 8 5 43 43 H 1.09006 * 113.76402 * 252.36602 * 10 9 8 44 44 H 1.08997 * 113.76968 * 23.75227 * 10 9 8 45 45 H 1.09003 * 109.47319 * 299.99914 * 14 12 11 46 46 H 1.09001 * 109.47328 * 59.99726 * 14 12 11 47 47 H 1.07996 * 126.29731 * 359.97438 * 16 15 14 48 48 H 1.08001 * 126.28612 * 179.97438 * 17 16 15 49 49 H 1.08997 * 109.46889 * 239.97563 * 19 18 17 50 50 H 0.96694 * 113.99724 * 180.02562 * 20 19 18 51 51 H 0.97004 * 125.63913 * 180.26707 * 25 18 17 52 52 H 1.09003 * 113.77049 * 270.34039 * 26 11 10 53 53 H 1.08993 * 113.77081 * 138.93800 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1511 -0.8782 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8775 1.5215 8 8 1.6075 -2.4159 1.5212 9 6 2.0287 -3.1813 2.6520 10 6 0.8854 -3.5397 3.6186 11 7 1.5094 -4.8786 3.6959 12 6 1.5067 -5.8709 4.6080 13 8 2.1285 -6.8905 4.3966 14 6 0.7303 -5.7138 5.8899 15 6 0.8913 -6.9545 6.7300 16 6 1.9067 -7.2069 7.5807 17 6 1.6694 -8.4703 8.1576 18 6 0.5177 -8.9415 7.6379 19 6 -0.1256 -10.2634 7.9693 20 8 -1.4283 -10.0367 8.5112 21 14 0.9190 -11.1658 9.2204 22 1 0.2855 -12.4687 9.5466 23 1 2.2728 -11.4014 8.6574 24 1 1.0317 -10.3470 10.4542 25 7 0.0323 -8.0128 6.7657 26 6 2.1363 -4.6915 2.3730 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8901 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1301 -0.7208 -1.2495 36 1 1.8930 -0.5141 3.9323 37 1 1.8934 1.0277 3.0423 38 1 0.4400 -0.0001 3.0423 39 1 4.3777 -1.3910 0.6315 40 1 4.3770 0.1503 1.5217 41 1 4.3775 -1.3909 2.4117 42 1 2.9058 -2.7627 3.1456 43 1 0.9132 -2.9851 4.5566 44 1 -0.0999 -3.5404 3.1526 45 1 1.1075 -4.8516 6.4400 46 1 -0.3247 -5.5648 5.6598 47 1 2.7478 -6.5601 7.7821 48 1 2.2949 -8.9695 8.8828 49 1 -0.2082 -10.8644 7.0638 50 1 -1.9018 -10.8457 8.7483 51 1 -0.7873 -8.0929 6.2529 52 1 1.5175 -5.0299 1.5418 53 1 3.1619 -5.0560 2.3173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18362370_14644196.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:54:54 Heat of formation + Delta-G solvation = -83.537310 kcal Electronic energy + Delta-G solvation = -29438.240660 eV Core-core repulsion = 25435.261857 eV Total energy + Delta-G solvation = -4002.978803 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.21942 -41.30465 -39.13640 -37.66893 -36.92603 -36.47720 -33.24812 -31.79861 -30.51663 -29.54728 -29.20660 -28.71630 -27.94809 -27.53459 -27.24913 -24.92974 -22.91789 -21.23056 -21.13997 -20.48668 -20.08219 -18.64375 -18.49530 -18.19508 -18.05716 -16.76984 -16.50672 -16.13508 -16.09200 -15.46311 -15.30446 -15.02891 -14.91529 -14.88825 -14.69786 -14.55204 -14.41609 -14.23958 -14.04561 -13.87076 -13.70444 -13.56890 -13.53590 -13.37046 -13.26640 -13.17505 -13.01561 -13.01311 -12.94857 -12.77853 -12.48539 -12.46332 -11.94127 -11.91571 -11.82421 -11.79964 -11.65070 -11.46799 -10.86210 -10.49040 -10.45528 -10.17378 -9.80347 -9.63590 -8.80836 1.07325 1.13275 1.28909 1.51043 1.59179 1.61193 1.64038 1.82024 1.91212 1.99620 2.17658 2.30897 2.52290 3.17335 3.38668 3.40677 3.65356 3.76186 3.93475 3.99460 4.03415 4.03660 4.05661 4.17471 4.34907 4.36528 4.39405 4.41752 4.46562 4.55773 4.57147 4.62615 4.62839 4.63961 4.65933 4.73276 4.73940 4.77710 4.89883 4.92015 5.02561 5.03128 5.11336 5.26233 5.31371 5.33671 5.37932 5.41590 5.42925 5.44598 5.50575 6.13443 6.26987 6.51280 6.56402 6.74624 7.14743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.135 4.135 5 Si 1.284 2.716 6 C -0.510 4.510 7 C -0.512 4.512 8 O -0.608 6.608 9 C 0.079 3.921 10 C 0.081 3.919 11 N -0.649 5.649 12 C 0.539 3.461 13 O -0.519 6.519 14 C -0.064 4.064 15 C 0.034 3.966 16 C -0.170 4.170 17 C -0.193 4.193 18 C 0.037 3.963 19 C -0.063 4.063 20 O -0.551 6.551 21 Si 0.973 3.027 22 H -0.258 1.258 23 H -0.248 1.248 24 H -0.245 1.245 25 N -0.534 5.534 26 C 0.108 3.892 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.117 0.883 46 H 0.100 0.900 47 H 0.137 0.863 48 H 0.137 0.863 49 H 0.073 0.927 50 H 0.382 0.618 51 H 0.413 0.587 52 H 0.098 0.902 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 3.253 -0.416 3.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.419 4.419 3 C -0.194 4.194 4 C -0.192 4.192 5 Si 1.416 2.584 6 C -0.612 4.612 7 C -0.614 4.614 8 O -0.565 6.565 9 C 0.021 3.979 10 C -0.043 4.043 11 N -0.388 5.388 12 C 0.328 3.672 13 O -0.393 6.393 14 C -0.105 4.105 15 C -0.080 4.080 16 C -0.194 4.194 17 C -0.218 4.218 18 C -0.076 4.076 19 C -0.172 4.172 20 O -0.357 6.357 21 Si 0.793 3.207 22 H -0.182 1.182 23 H -0.171 1.171 24 H -0.168 1.168 25 N -0.128 5.128 26 C -0.014 4.014 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.117 0.883 43 H 0.109 0.891 44 H 0.119 0.881 45 H 0.135 0.865 46 H 0.118 0.882 47 H 0.155 0.845 48 H 0.155 0.845 49 H 0.091 0.909 50 H 0.229 0.771 51 H 0.250 0.750 52 H 0.116 0.884 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.347 2.506 -0.102 2.847 hybrid contribution -0.674 0.254 -0.540 0.901 sum -2.021 2.760 -0.643 3.481 Atomic orbital electron populations 1.21517 0.93764 1.01992 1.01867 1.25793 1.00714 1.02675 1.12671 1.21562 1.00812 0.94866 1.02209 1.21521 1.00657 1.00242 0.96781 0.76793 0.63111 0.53270 0.65202 1.27055 1.07090 1.09631 1.17420 1.27057 1.24850 1.04896 1.04590 1.85456 1.78612 1.46252 1.46199 1.23601 0.96480 0.92037 0.85777 1.23935 0.98871 0.81474 0.99975 1.49748 1.52138 1.17599 1.19323 1.20247 0.81412 0.81405 0.84158 1.90786 1.43239 1.27297 1.78010 1.20046 1.01694 0.96210 0.92540 1.19431 0.94448 0.90939 1.03177 1.20540 0.99607 0.98032 1.01259 1.20590 0.98488 0.97554 1.05209 1.19565 0.96980 0.92600 0.98500 1.24477 0.90726 0.97183 1.04854 1.86490 1.28321 1.36109 1.84786 0.85346 0.78982 0.77835 0.78542 1.18194 1.17083 1.16835 1.41724 1.21041 1.14835 1.35201 1.23426 1.00070 0.92333 0.85606 0.92662 0.92766 0.92161 0.92493 0.92460 0.92476 0.92123 0.92760 0.92661 0.91427 0.90596 0.90731 0.90714 0.90575 0.91468 0.88314 0.89133 0.88077 0.86518 0.88185 0.84479 0.84534 0.90901 0.77067 0.75037 0.88355 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.18 7.85 37.16 0.29 0.47 16 2 C -0.37 0.59 0.53 -90.62 -0.05 0.55 16 3 C -0.14 0.22 7.85 37.16 0.29 0.52 16 4 C -0.13 0.13 7.85 37.16 0.29 0.43 16 5 Si 1.28 -3.56 8.27 -169.99 -1.41 -4.97 16 6 C -0.51 1.39 8.65 101.05 0.87 2.27 16 7 C -0.51 1.00 8.62 101.05 0.87 1.87 16 8 O -0.61 1.19 8.58 -35.23 -0.30 0.89 16 9 C 0.08 -0.19 3.72 -25.80 -0.10 -0.29 16 10 C 0.08 -0.25 8.47 -2.77 -0.02 -0.27 16 11 N -0.65 0.06 3.62 -178.32 -0.64 -0.59 16 12 C 0.54 1.24 8.05 -10.99 -0.09 1.15 16 13 O -0.52 -3.60 16.76 5.55 0.09 -3.50 16 14 C -0.06 0.02 5.99 -29.04 -0.17 -0.15 16 15 C 0.03 0.09 5.66 -81.79 -0.46 -0.37 16 16 C -0.17 -0.63 10.77 -39.78 -0.43 -1.05 16 17 C -0.19 -0.76 9.37 -39.78 -0.37 -1.13 16 18 C 0.04 0.12 6.54 -81.79 -0.53 -0.41 16 19 C -0.06 -0.05 3.07 36.01 0.11 0.06 16 20 O -0.55 -0.34 12.86 -35.23 -0.45 -0.79 16 21 Si 0.97 0.28 25.87 -169.99 -4.40 -4.11 16 22 H -0.26 0.02 7.11 56.52 0.40 0.43 16 23 H -0.25 -0.33 7.11 56.52 0.40 0.08 16 24 H -0.25 -0.42 7.11 56.52 0.40 -0.02 16 25 N -0.53 -1.39 6.07 -5.44 -0.03 -1.43 16 26 C 0.11 -0.07 8.67 -2.96 -0.03 -0.10 16 27 H 0.05 -0.11 7.79 -51.93 -0.40 -0.51 16 28 H 0.05 -0.04 8.14 -51.93 -0.42 -0.46 16 29 H 0.06 -0.08 7.96 -51.93 -0.41 -0.49 16 30 H 0.06 -0.12 7.79 -51.93 -0.40 -0.53 16 31 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 32 H 0.06 -0.13 7.79 -51.93 -0.40 -0.54 16 33 H 0.06 -0.05 7.97 -51.93 -0.41 -0.47 16 34 H 0.05 -0.03 8.14 -51.93 -0.42 -0.45 16 35 H 0.05 -0.08 7.79 -51.93 -0.40 -0.48 16 36 H 0.07 -0.22 7.96 -51.93 -0.41 -0.63 16 37 H 0.07 -0.20 7.79 -51.93 -0.40 -0.60 16 38 H 0.07 -0.20 7.79 -51.93 -0.40 -0.61 16 39 H 0.07 -0.11 7.79 -51.93 -0.40 -0.52 16 40 H 0.08 -0.15 7.79 -51.93 -0.40 -0.56 16 41 H 0.07 -0.15 7.25 -51.93 -0.38 -0.53 16 42 H 0.10 -0.38 6.44 -51.93 -0.33 -0.71 16 43 H 0.09 -0.46 8.14 -51.93 -0.42 -0.88 16 44 H 0.10 -0.37 8.14 -51.93 -0.42 -0.80 16 45 H 0.12 -0.31 8.14 -51.93 -0.42 -0.73 16 46 H 0.10 -0.25 8.14 -51.93 -0.42 -0.68 16 47 H 0.14 0.30 8.06 -52.49 -0.42 -0.13 16 48 H 0.14 0.34 6.22 -52.49 -0.33 0.01 16 49 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 50 H 0.38 -1.49 8.74 45.56 0.40 -1.09 16 51 H 0.41 0.23 8.96 -40.82 -0.37 -0.13 16 52 H 0.10 -0.08 8.14 -51.93 -0.42 -0.51 16 53 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 LS Contribution 428.14 15.07 6.45 6.45 Total: 0.00 -9.34 428.14 -9.13 -18.48 By element: Atomic # 1 Polarization: -5.03 SS G_CDS: -8.92 Total: -13.95 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 0.48 Total: 3.53 kcal Atomic # 7 Polarization: -1.34 SS G_CDS: -0.68 Total: -2.02 kcal Atomic # 8 Polarization: -2.75 SS G_CDS: -0.66 Total: -3.41 kcal Atomic # 14 Polarization: -3.28 SS G_CDS: -5.80 Total: -9.09 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -9.34 -9.13 -18.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_14644196.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.060 kcal (2) G-P(sol) polarization free energy of solvation -9.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds