Wall clock time and date at job start Tue Mar 9 2021 13:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46808 * 2 1 4 4 C 1.53001 * 109.47349 * 240.00038 * 2 1 3 5 5 Si 1.86300 * 109.47444 * 119.99898 * 2 1 3 6 6 C 1.86306 * 109.47140 * 300.00397 * 5 2 1 7 7 C 1.86293 * 109.47447 * 180.02562 * 5 2 1 8 8 O 1.63098 * 109.47132 * 60.00195 * 5 2 1 9 9 C 1.42898 * 114.00229 * 180.02562 * 8 5 2 10 10 C 1.53950 * 113.74250 * 111.26071 * 9 8 5 11 11 N 1.47925 * 85.99684 * 138.00445 * 10 9 8 12 12 C 1.34780 * 134.49772 * 155.35643 * 11 10 9 13 13 O 1.21284 * 119.99485 * 179.97438 * 12 11 10 14 14 C 1.50693 * 120.00205 * 0.02562 * 12 11 10 15 15 C 1.50697 * 109.47182 * 180.02562 * 14 12 11 16 16 C 1.34851 * 125.89058 * 85.02354 * 15 14 12 17 17 C 1.40897 * 107.41494 * 180.02562 * 16 15 14 18 18 C 1.34852 * 107.41878 * 359.97438 * 17 16 15 19 19 C 1.50702 * 125.89104 * 180.02562 * 18 17 16 20 20 O 1.42900 * 109.47307 * 119.97233 * 19 18 17 21 21 Si 1.86299 * 109.46907 * 359.97064 * 19 18 17 22 22 H 1.48498 * 109.47042 * 180.02562 * 21 19 18 23 23 H 1.48499 * 109.47382 * 300.00417 * 21 19 18 24 24 H 1.48505 * 109.47255 * 60.00370 * 21 19 18 25 25 N 1.36340 * 108.21625 * 359.73794 * 18 17 16 26 26 C 1.47579 * 91.00789 * 335.35638 * 11 10 9 27 27 H 1.09000 * 109.47305 * 299.99583 * 1 2 3 28 28 H 1.09000 * 109.47044 * 60.00231 * 1 2 3 29 29 H 1.09003 * 109.46860 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46899 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47130 * 299.99716 * 3 2 1 32 32 H 1.09003 * 109.47140 * 60.00570 * 3 2 1 33 33 H 1.09003 * 109.47101 * 299.99805 * 4 2 1 34 34 H 1.08999 * 109.46750 * 59.99769 * 4 2 1 35 35 H 1.09004 * 109.47312 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.46929 * 179.97438 * 6 5 2 37 37 H 1.09000 * 109.46530 * 299.99611 * 6 5 2 38 38 H 1.08998 * 109.46827 * 59.99683 * 6 5 2 39 39 H 1.09000 * 109.47192 * 300.00451 * 7 5 2 40 40 H 1.09003 * 109.46971 * 60.00024 * 7 5 2 41 41 H 1.09004 * 109.47745 * 179.97438 * 7 5 2 42 42 H 1.09002 * 112.94238 * 339.66639 * 9 8 5 43 43 H 1.09006 * 113.76402 * 252.36602 * 10 9 8 44 44 H 1.08997 * 113.76968 * 23.75227 * 10 9 8 45 45 H 1.09003 * 109.47319 * 299.99914 * 14 12 11 46 46 H 1.09001 * 109.47328 * 59.99726 * 14 12 11 47 47 H 1.07996 * 126.29731 * 359.97438 * 16 15 14 48 48 H 1.08001 * 126.28612 * 179.97438 * 17 16 15 49 49 H 1.08997 * 109.46889 * 239.97563 * 19 18 17 50 50 H 0.96694 * 113.99724 * 180.02562 * 20 19 18 51 51 H 0.97004 * 125.63913 * 180.26707 * 25 18 17 52 52 H 1.09003 * 113.77049 * 270.34039 * 26 11 10 53 53 H 1.08993 * 113.77081 * 138.93800 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1511 -0.8782 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8775 1.5215 8 8 1.6075 -2.4159 1.5212 9 6 2.0287 -3.1813 2.6520 10 6 0.8854 -3.5397 3.6186 11 7 1.5094 -4.8786 3.6959 12 6 1.5067 -5.8709 4.6080 13 8 2.1285 -6.8905 4.3966 14 6 0.7303 -5.7138 5.8899 15 6 0.8913 -6.9545 6.7300 16 6 1.9067 -7.2069 7.5807 17 6 1.6694 -8.4703 8.1576 18 6 0.5177 -8.9415 7.6379 19 6 -0.1256 -10.2634 7.9693 20 8 -1.4283 -10.0367 8.5112 21 14 0.9190 -11.1658 9.2204 22 1 0.2855 -12.4687 9.5466 23 1 2.2728 -11.4014 8.6574 24 1 1.0317 -10.3470 10.4542 25 7 0.0323 -8.0128 6.7657 26 6 2.1363 -4.6915 2.3730 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8901 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1301 -0.7208 -1.2495 36 1 1.8930 -0.5141 3.9323 37 1 1.8934 1.0277 3.0423 38 1 0.4400 -0.0001 3.0423 39 1 4.3777 -1.3910 0.6315 40 1 4.3770 0.1503 1.5217 41 1 4.3775 -1.3909 2.4117 42 1 2.9058 -2.7627 3.1456 43 1 0.9132 -2.9851 4.5566 44 1 -0.0999 -3.5404 3.1526 45 1 1.1075 -4.8516 6.4400 46 1 -0.3247 -5.5648 5.6598 47 1 2.7478 -6.5601 7.7821 48 1 2.2949 -8.9695 8.8828 49 1 -0.2082 -10.8644 7.0638 50 1 -1.9018 -10.8457 8.7483 51 1 -0.7873 -8.0929 6.2529 52 1 1.5175 -5.0299 1.5418 53 1 3.1619 -5.0560 2.3173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_14644196.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:54:53 Heat of formation + Delta-G solvation = -81.704897 kcal Electronic energy + Delta-G solvation = -29438.161201 eV Core-core repulsion = 25435.261857 eV Total energy + Delta-G solvation = -4002.899343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.34863 -41.26162 -39.20625 -37.67838 -36.79402 -36.37562 -33.31931 -31.97667 -30.55458 -29.34962 -29.02638 -28.66912 -27.80875 -27.39542 -27.09042 -24.99892 -22.83463 -21.39926 -21.27031 -20.36315 -20.04496 -18.52511 -18.45540 -18.21512 -18.11040 -16.77880 -16.50074 -16.16701 -15.96971 -15.40880 -15.26375 -15.07485 -14.81116 -14.78632 -14.75010 -14.53739 -14.46590 -14.23262 -13.90802 -13.75617 -13.60439 -13.51348 -13.34553 -13.32836 -13.13867 -13.12020 -12.91368 -12.89554 -12.88108 -12.68872 -12.53021 -12.35149 -12.01717 -11.88946 -11.74898 -11.66590 -11.50423 -11.30502 -11.00492 -10.46239 -10.28719 -10.02530 -9.83571 -9.79180 -8.96949 1.01507 1.12187 1.36569 1.48055 1.53037 1.58078 1.81083 1.81095 1.95333 2.06895 2.15130 2.43689 2.50815 3.34311 3.43244 3.48574 3.73007 3.89835 3.95179 4.08993 4.16031 4.16538 4.17607 4.34960 4.39705 4.44580 4.49646 4.54697 4.58814 4.65641 4.68201 4.76659 4.77613 4.80323 4.82598 4.85076 4.86896 4.89180 4.91221 5.04507 5.13179 5.14062 5.19775 5.25111 5.25602 5.38991 5.45654 5.48696 5.56189 5.64266 5.73000 5.96278 6.08829 6.57006 6.66517 6.76098 7.06744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.386 4.386 3 C -0.142 4.142 4 C -0.139 4.139 5 Si 1.321 2.679 6 C -0.514 4.514 7 C -0.524 4.524 8 O -0.617 6.617 9 C 0.082 3.918 10 C 0.082 3.918 11 N -0.648 5.648 12 C 0.535 3.465 13 O -0.578 6.578 14 C -0.058 4.058 15 C 0.031 3.969 16 C -0.197 4.197 17 C -0.219 4.219 18 C 0.021 3.979 19 C -0.061 4.061 20 O -0.565 6.565 21 Si 1.007 2.993 22 H -0.245 1.245 23 H -0.267 1.267 24 H -0.270 1.270 25 N -0.534 5.534 26 C 0.094 3.906 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.112 0.888 45 H 0.144 0.856 46 H 0.127 0.873 47 H 0.143 0.857 48 H 0.139 0.861 49 H 0.089 0.911 50 H 0.401 0.599 51 H 0.421 0.579 52 H 0.096 0.904 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.238 4.202 0.209 5.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.428 4.428 3 C -0.199 4.199 4 C -0.196 4.196 5 Si 1.451 2.549 6 C -0.616 4.616 7 C -0.625 4.625 8 O -0.574 6.574 9 C 0.024 3.976 10 C -0.039 4.039 11 N -0.385 5.385 12 C 0.326 3.674 13 O -0.457 6.457 14 C -0.098 4.098 15 C -0.083 4.083 16 C -0.221 4.221 17 C -0.244 4.244 18 C -0.093 4.093 19 C -0.171 4.171 20 O -0.374 6.374 21 Si 0.829 3.171 22 H -0.169 1.169 23 H -0.192 1.192 24 H -0.194 1.194 25 N -0.129 5.129 26 C -0.029 4.029 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.133 0.867 43 H 0.139 0.861 44 H 0.130 0.870 45 H 0.162 0.838 46 H 0.145 0.855 47 H 0.161 0.839 48 H 0.157 0.843 49 H 0.107 0.893 50 H 0.252 0.748 51 H 0.259 0.741 52 H 0.114 0.886 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.548 3.481 0.489 4.341 hybrid contribution -0.291 0.003 -0.810 0.861 sum -2.839 3.484 -0.321 4.506 Atomic orbital electron populations 1.21547 0.94015 1.01955 1.01884 1.25999 1.00612 1.02908 1.13287 1.21612 1.01156 0.94900 1.02231 1.21559 1.00897 1.00137 0.96985 0.76145 0.61903 0.52562 0.64302 1.27059 1.07372 1.09682 1.17517 1.27212 1.25936 1.04920 1.04463 1.85442 1.78751 1.46656 1.46578 1.23632 0.97526 0.90709 0.85772 1.24188 0.98849 0.79598 1.01270 1.49818 1.51690 1.18126 1.18878 1.20676 0.80827 0.80890 0.85029 1.90758 1.45911 1.29726 1.79343 1.20161 1.03007 0.95636 0.91013 1.19881 0.93905 0.91750 1.02781 1.20812 1.00547 0.98448 1.02325 1.20844 0.99315 0.98245 1.06002 1.19989 0.97151 0.93616 0.98550 1.24487 0.90885 0.96034 1.05682 1.86437 1.28198 1.37899 1.84861 0.84872 0.77762 0.77580 0.76910 1.16893 1.19198 1.19449 1.41825 1.21365 1.14726 1.35031 1.23563 0.99625 0.94120 0.85572 0.91665 0.93782 0.92195 0.92063 0.93435 0.91510 0.92328 0.93645 0.92353 0.90360 0.90591 0.90374 0.91458 0.90506 0.91027 0.86715 0.86146 0.87026 0.83794 0.85485 0.83869 0.84313 0.89291 0.74834 0.74094 0.88577 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.38 7.85 71.98 0.56 0.95 16 2 C -0.39 1.27 0.53 -10.79 -0.01 1.26 16 3 C -0.14 0.47 7.85 71.98 0.56 1.04 16 4 C -0.14 0.19 7.85 71.98 0.56 0.75 16 5 Si 1.32 -8.70 8.27 68.60 0.57 -8.13 16 6 C -0.51 3.91 8.65 113.37 0.98 4.89 16 7 C -0.52 2.33 8.62 113.37 0.98 3.31 16 8 O -0.62 3.06 8.58 -148.98 -1.28 1.78 16 9 C 0.08 -0.50 3.72 31.26 0.12 -0.39 16 10 C 0.08 -0.69 8.47 86.42 0.73 0.04 16 11 N -0.65 0.58 3.62 -840.30 -3.04 -2.46 16 12 C 0.54 2.43 8.05 87.65 0.71 3.14 16 13 O -0.58 -8.90 16.76 -3.04 -0.05 -8.95 16 14 C -0.06 0.11 5.99 29.10 0.17 0.29 16 15 C 0.03 0.17 5.66 41.08 0.23 0.40 16 16 C -0.20 -1.68 10.77 22.14 0.24 -1.44 16 17 C -0.22 -2.06 9.37 22.14 0.21 -1.85 16 18 C 0.02 0.16 6.54 41.08 0.27 0.42 16 19 C -0.06 -0.10 3.07 71.24 0.22 0.12 16 20 O -0.56 -0.42 12.86 -148.98 -1.92 -2.33 16 21 Si 1.01 1.12 25.87 68.60 1.77 2.90 16 22 H -0.25 0.26 7.11 99.48 0.71 0.97 16 23 H -0.27 -1.09 7.11 99.48 0.71 -0.39 16 24 H -0.27 -1.32 7.11 99.48 0.71 -0.62 16 25 N -0.53 -2.96 6.07 -171.12 -1.04 -3.99 16 26 C 0.09 -0.11 8.67 86.49 0.75 0.64 16 27 H 0.06 -0.32 7.79 -2.39 -0.02 -0.34 16 28 H 0.04 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 30 H 0.06 -0.27 7.79 -2.39 -0.02 -0.28 16 31 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.07 -0.36 7.79 -2.39 -0.02 -0.37 16 33 H 0.06 -0.07 7.97 -2.39 -0.02 -0.09 16 34 H 0.04 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.06 -0.13 7.79 -2.39 -0.02 -0.15 16 36 H 0.08 -0.74 7.96 -2.39 -0.02 -0.75 16 37 H 0.07 -0.54 7.79 -2.39 -0.02 -0.55 16 38 H 0.08 -0.61 7.79 -2.39 -0.02 -0.63 16 39 H 0.07 -0.19 7.79 -2.39 -0.02 -0.21 16 40 H 0.08 -0.35 7.79 -2.39 -0.02 -0.37 16 41 H 0.07 -0.38 7.25 -2.38 -0.02 -0.40 16 42 H 0.12 -1.08 6.44 -2.39 -0.02 -1.10 16 43 H 0.12 -1.68 8.14 -2.38 -0.02 -1.70 16 44 H 0.11 -1.11 8.14 -2.39 -0.02 -1.13 16 45 H 0.14 -1.09 8.14 -2.39 -0.02 -1.11 16 46 H 0.13 -0.94 8.14 -2.39 -0.02 -0.96 16 47 H 0.14 0.81 8.06 -2.91 -0.02 0.79 16 48 H 0.14 1.00 6.22 -2.91 -0.02 0.98 16 49 H 0.09 -0.16 7.96 -2.39 -0.02 -0.18 16 50 H 0.40 -3.51 8.74 -74.06 -0.65 -4.15 16 51 H 0.42 0.45 8.96 -92.71 -0.83 -0.38 16 52 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 53 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16 Total: 0.00 -23.69 428.14 2.48 -21.21 By element: Atomic # 1 Polarization: -13.75 SS G_CDS: 0.17 Total: -13.58 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 7.29 Total: 13.56 kcal Atomic # 7 Polarization: -2.38 SS G_CDS: -4.08 Total: -6.45 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -3.24 Total: -9.50 kcal Atomic # 14 Polarization: -7.57 SS G_CDS: 2.34 Total: -5.23 kcal Total: -23.69 2.48 -21.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_14644196.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.498 kcal (2) G-P(sol) polarization free energy of solvation -23.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds