Wall clock time and date at job start Tue Mar 9 2021 13:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47601 * 2 1 4 4 C 1.53005 * 109.46946 * 240.00043 * 2 1 3 5 5 Si 1.86297 * 109.47290 * 120.00193 * 2 1 3 6 6 C 1.86297 * 109.47177 * 299.99936 * 5 2 1 7 7 C 1.86300 * 109.47542 * 179.97438 * 5 2 1 8 8 O 1.63103 * 109.47061 * 59.99726 * 5 2 1 9 9 C 1.42903 * 114.00366 * 179.97438 * 8 5 2 10 10 C 1.53490 * 114.20742 * 149.99690 * 9 8 5 11 11 N 1.47065 * 87.98513 * 139.85626 * 10 9 8 12 12 C 1.34777 * 136.06111 * 152.84024 * 11 10 9 13 13 O 1.21278 * 119.99854 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.00161 * 180.02562 * 12 11 10 15 15 O 1.42898 * 109.47171 * 180.02562 * 14 12 11 16 16 C 1.35900 * 117.00172 * 179.97438 * 15 14 12 17 17 C 1.38703 * 120.05607 * 0.02562 * 16 15 14 18 18 C 1.38161 * 119.94842 * 180.02562 * 17 16 15 19 19 C 1.38250 * 120.05475 * 359.97438 * 18 17 16 20 20 C 1.38287 * 120.10826 * 0.02562 * 19 18 17 21 21 C 1.38131 * 120.05760 * 359.68459 * 20 19 18 22 22 C 1.50688 * 120.02671 * 180.31871 * 21 20 19 23 23 O 1.42905 * 109.47276 * 105.27446 * 22 21 20 24 24 Si 1.86297 * 109.47773 * 345.27191 * 22 21 20 25 25 H 1.48508 * 109.46768 * 60.00107 * 24 22 21 26 26 H 1.48498 * 109.47518 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46907 * 300.00487 * 24 22 21 28 28 C 1.47071 * 87.88672 * 333.10246 * 11 10 9 29 29 H 1.08999 * 109.47127 * 299.99984 * 1 2 3 30 30 H 1.08998 * 109.46863 * 59.99823 * 1 2 3 31 31 H 1.09000 * 109.47288 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47429 * 179.97438 * 3 2 1 33 33 H 1.09008 * 109.46768 * 300.00407 * 3 2 1 34 34 H 1.08999 * 109.46867 * 59.99857 * 3 2 1 35 35 H 1.09000 * 109.47170 * 300.00125 * 4 2 1 36 36 H 1.08998 * 109.47230 * 60.00359 * 4 2 1 37 37 H 1.09004 * 109.46707 * 179.97438 * 4 2 1 38 38 H 1.08998 * 109.47404 * 179.97438 * 6 5 2 39 39 H 1.09000 * 109.46984 * 299.99842 * 6 5 2 40 40 H 1.09004 * 109.46719 * 59.99939 * 6 5 2 41 41 H 1.08997 * 109.46928 * 300.00481 * 7 5 2 42 42 H 1.09000 * 109.46956 * 59.99952 * 7 5 2 43 43 H 1.08998 * 109.47115 * 179.97438 * 7 5 2 44 44 H 1.09008 * 113.27654 * 16.93578 * 9 8 5 45 45 H 1.09000 * 113.47169 * 25.08097 * 10 9 8 46 46 H 1.08997 * 113.52271 * 254.64517 * 10 9 8 47 47 H 1.09002 * 109.47152 * 60.00245 * 14 12 11 48 48 H 1.09001 * 109.46980 * 300.00345 * 14 12 11 49 49 H 1.08006 * 120.02590 * 0.02562 * 17 16 15 50 50 H 1.08001 * 119.97934 * 179.97438 * 18 17 16 51 51 H 1.07997 * 119.94517 * 180.02562 * 19 18 17 52 52 H 1.07996 * 119.97263 * 179.97438 * 20 19 18 53 53 H 1.09007 * 109.47111 * 225.27322 * 22 21 20 54 54 H 0.96700 * 114.00303 * 179.97438 * 23 22 21 55 55 H 1.08998 * 113.47201 * 141.67247 * 28 11 10 56 56 H 1.08996 * 113.46733 * 272.12249 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5301 -0.0001 3.0422 7 6 4.0140 -0.8790 1.5207 8 8 1.6073 -2.4160 1.5210 9 6 2.0294 -3.1818 2.6513 10 6 1.0421 -4.2790 3.0724 11 7 2.1987 -5.1539 3.3163 12 6 2.4684 -6.2061 4.1142 13 8 1.6174 -6.6302 4.8670 14 6 3.8276 -6.8557 4.0710 15 8 3.8668 -7.9406 5.0002 16 6 5.0302 -8.6379 5.0858 17 6 6.1117 -8.2849 4.2923 18 6 7.2931 -8.9957 4.3807 19 6 7.3981 -10.0577 5.2596 20 6 6.3213 -10.4116 6.0518 21 6 5.1399 -9.7004 5.9714 22 6 3.9693 -10.0821 6.8402 23 8 3.8315 -9.1316 7.8984 24 14 4.2566 -11.7760 7.5605 25 1 5.4962 -11.7624 8.3782 26 1 3.1027 -12.1524 8.4161 27 1 4.3998 -12.7636 6.4608 28 6 2.9337 -4.3713 2.3112 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7208 -1.2495 38 1 1.8930 -0.5142 3.9322 39 1 1.8934 1.0275 3.0422 40 1 0.4400 -0.0001 3.0422 41 1 4.3770 -1.3930 0.6307 42 1 4.3777 0.1486 1.5206 43 1 4.3773 -1.3924 2.4109 44 1 2.3941 -2.5685 3.4753 45 1 0.4020 -4.6223 2.2596 46 1 0.4825 -4.0372 3.9759 47 1 4.5894 -6.1223 4.3357 48 1 4.0189 -7.2315 3.0658 49 1 6.0303 -7.4551 3.6058 50 1 8.1354 -8.7216 3.7628 51 1 8.3226 -10.6118 5.3276 52 1 6.4056 -11.2418 6.7373 53 1 3.0594 -10.0921 6.2400 54 1 3.0956 -9.3149 8.4983 55 1 3.9799 -4.2069 2.5691 56 1 2.8026 -4.7393 1.2937 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18362370_2989392.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:55:43 Heat of formation + Delta-G solvation = -120.107642 kcal Electronic energy + Delta-G solvation = -33292.274594 eV Core-core repulsion = 28906.227561 eV Total energy + Delta-G solvation = -4386.047033 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 381.198 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.81516 -41.20207 -39.53152 -38.33162 -37.48923 -36.79570 -36.51793 -32.90916 -31.68906 -30.77026 -29.34552 -29.02344 -28.41230 -27.80681 -27.35560 -26.93109 -26.63085 -23.78371 -22.74558 -22.41428 -20.38454 -20.16482 -19.38285 -18.55613 -18.50391 -18.11199 -17.57603 -17.39924 -16.90152 -16.59867 -16.08560 -15.94753 -15.71917 -15.48652 -15.20165 -15.07470 -14.99666 -14.78664 -14.73624 -14.39719 -14.31328 -14.06885 -13.91349 -13.71340 -13.61119 -13.50927 -13.33717 -13.14728 -13.08693 -13.02833 -12.91215 -12.88254 -12.77317 -12.65952 -12.34589 -12.22500 -12.08820 -11.78736 -11.75495 -11.72448 -11.66107 -11.49256 -11.28697 -11.07642 -10.29098 -10.27025 -10.03507 -9.97124 -9.91846 -9.22962 0.21663 0.39931 1.05980 1.13131 1.30612 1.43089 1.47720 1.63142 1.79988 1.85027 2.13613 2.37281 2.50097 2.66430 3.15988 3.30155 3.51517 3.77839 3.80091 3.89941 3.94694 3.98612 4.06306 4.14764 4.16113 4.16630 4.23408 4.31836 4.36799 4.44197 4.50801 4.51377 4.62308 4.62919 4.64967 4.69745 4.77279 4.81352 4.85246 4.86788 4.87871 4.90224 4.96376 5.04831 5.13551 5.14523 5.25448 5.27134 5.36621 5.39074 5.46003 5.48038 5.50516 5.53807 5.63844 5.72061 5.73764 6.29282 6.46678 6.77918 6.88719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.385 4.385 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.324 2.676 6 C -0.525 4.525 7 C -0.514 4.514 8 O -0.612 6.612 9 C 0.081 3.919 10 C 0.092 3.908 11 N -0.646 5.646 12 C 0.545 3.455 13 O -0.570 6.570 14 C 0.045 3.955 15 O -0.311 6.311 16 C 0.130 3.870 17 C -0.210 4.210 18 C -0.074 4.074 19 C -0.155 4.155 20 C -0.099 4.099 21 C -0.133 4.133 22 C -0.084 4.084 23 O -0.562 6.562 24 Si 0.989 3.011 25 H -0.254 1.254 26 H -0.259 1.259 27 H -0.253 1.253 28 C 0.079 3.921 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.119 0.881 45 H 0.103 0.897 46 H 0.077 0.923 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.159 0.841 50 H 0.158 0.842 51 H 0.151 0.849 52 H 0.136 0.864 53 H 0.065 0.935 54 H 0.391 0.609 55 H 0.117 0.883 56 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.228 3.011 -4.744 7.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.428 4.428 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.454 2.546 6 C -0.626 4.626 7 C -0.617 4.617 8 O -0.569 6.569 9 C 0.023 3.977 10 C -0.031 4.031 11 N -0.384 5.384 12 C 0.335 3.665 13 O -0.448 6.448 14 C -0.032 4.032 15 O -0.223 6.223 16 C 0.085 3.915 17 C -0.228 4.228 18 C -0.092 4.092 19 C -0.173 4.173 20 C -0.117 4.117 21 C -0.134 4.134 22 C -0.192 4.192 23 O -0.370 6.370 24 Si 0.811 3.189 25 H -0.178 1.178 26 H -0.183 1.183 27 H -0.177 1.177 28 C -0.043 4.043 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.137 0.863 45 H 0.121 0.879 46 H 0.096 0.904 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.176 0.824 50 H 0.176 0.824 51 H 0.168 0.832 52 H 0.154 0.846 53 H 0.083 0.917 54 H 0.240 0.760 55 H 0.135 0.865 56 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.107 1.845 -4.213 6.873 hybrid contribution -0.890 0.899 0.083 1.268 sum 4.217 2.744 -4.130 6.509 Atomic orbital electron populations 1.21562 0.94558 1.01872 1.01631 1.25992 1.00181 1.03003 1.13581 1.21613 1.01450 0.94867 1.01998 1.21554 1.01264 1.00118 0.96502 0.76117 0.63089 0.52107 0.63336 1.27228 1.06891 1.10019 1.18493 1.27061 1.24111 1.05251 1.05251 1.85417 1.78473 1.46823 1.46182 1.23232 0.95054 0.91269 0.88138 1.23480 0.91137 0.86730 1.01711 1.49077 1.19149 1.30481 1.39718 1.19955 0.89370 0.78085 0.79132 1.90764 1.50196 1.62890 1.40936 1.22575 0.95079 0.89989 0.95583 1.86146 1.33138 1.43750 1.59309 1.19007 0.85391 0.91695 0.95448 1.21610 0.93482 1.04563 1.03177 1.21405 0.97384 0.93524 0.96862 1.21392 0.99271 0.99180 0.97464 1.21156 0.91925 0.99363 0.99228 1.18921 0.96576 0.98231 0.99641 1.24818 0.98385 1.04433 0.91606 1.86458 1.56180 1.52732 1.41602 0.85198 0.80414 0.73344 0.79976 1.17836 1.18341 1.17720 1.23894 0.99249 0.87349 0.93773 0.92371 0.93629 0.92244 0.91507 0.93402 0.92090 0.92089 0.93776 0.91645 0.91110 0.90496 0.91401 0.90268 0.90571 0.90458 0.86330 0.87920 0.90447 0.86100 0.85947 0.82379 0.82399 0.83166 0.84646 0.91719 0.75970 0.86492 0.86563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.25 7.85 71.98 0.56 0.82 16 2 C -0.39 1.45 0.53 -10.79 -0.01 1.44 16 3 C -0.14 0.53 7.85 71.98 0.56 1.09 16 4 C -0.14 0.46 7.85 71.98 0.56 1.03 16 5 Si 1.32 -9.30 8.24 68.60 0.57 -8.73 16 6 C -0.53 2.44 8.64 113.37 0.98 3.41 16 7 C -0.51 4.11 8.65 113.37 0.98 5.09 16 8 O -0.61 3.48 8.62 -148.98 -1.28 2.19 16 9 C 0.08 -0.54 3.89 30.84 0.12 -0.42 16 10 C 0.09 -0.15 8.46 83.18 0.70 0.56 16 11 N -0.65 0.28 3.69 -859.37 -3.17 -2.89 16 12 C 0.54 3.53 8.15 87.66 0.71 4.25 16 13 O -0.57 -10.19 17.27 16.01 0.28 -9.91 16 14 C 0.05 0.02 5.05 71.24 0.36 0.38 16 15 O -0.31 -2.90 9.00 -73.39 -0.66 -3.56 16 16 C 0.13 0.90 6.66 22.50 0.15 1.05 16 17 C -0.21 -0.02 9.04 22.36 0.20 0.18 16 18 C -0.07 0.12 10.04 22.25 0.22 0.34 16 19 C -0.16 -0.06 10.04 22.28 0.22 0.16 16 20 C -0.10 -0.43 8.66 22.26 0.19 -0.24 16 21 C -0.13 -1.07 5.31 -19.77 -0.10 -1.17 16 22 C -0.08 -0.61 2.37 71.23 0.17 -0.44 16 23 O -0.56 -5.03 12.86 -148.98 -1.92 -6.95 16 24 Si 0.99 2.87 25.48 68.60 1.75 4.62 16 25 H -0.25 -0.90 6.74 99.48 0.67 -0.23 16 26 H -0.26 -0.78 7.11 99.48 0.71 -0.07 16 27 H -0.25 -0.83 7.11 99.48 0.71 -0.12 16 28 C 0.08 -0.69 8.26 83.10 0.69 0.00 16 29 H 0.06 -0.15 7.79 -2.39 -0.02 -0.17 16 30 H 0.04 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.06 -0.10 7.97 -2.39 -0.02 -0.12 16 32 H 0.07 -0.38 7.79 -2.39 -0.02 -0.40 16 33 H 0.05 -0.09 8.14 -2.38 -0.02 -0.11 16 34 H 0.06 -0.28 7.79 -2.39 -0.02 -0.30 16 35 H 0.06 -0.21 7.97 -2.39 -0.02 -0.23 16 36 H 0.04 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.06 -0.36 7.79 -2.38 -0.02 -0.38 16 38 H 0.07 -0.38 7.31 -2.39 -0.02 -0.40 16 39 H 0.08 -0.36 7.79 -2.39 -0.02 -0.38 16 40 H 0.07 -0.21 7.79 -2.38 -0.02 -0.23 16 41 H 0.08 -0.66 7.79 -2.39 -0.02 -0.68 16 42 H 0.08 -0.56 7.79 -2.39 -0.02 -0.58 16 43 H 0.08 -0.74 7.96 -2.39 -0.02 -0.76 16 44 H 0.12 -1.16 6.49 -2.38 -0.02 -1.18 16 45 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 46 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 47 H 0.12 -0.69 7.66 -2.39 -0.02 -0.71 16 48 H 0.12 -0.73 7.66 -2.39 -0.02 -0.75 16 49 H 0.16 -1.09 6.30 -2.91 -0.02 -1.11 16 50 H 0.16 -1.23 8.06 -2.91 -0.02 -1.26 16 51 H 0.15 -0.69 8.06 -2.91 -0.02 -0.71 16 52 H 0.14 0.25 4.89 -2.91 -0.01 0.24 16 53 H 0.06 0.53 7.83 -2.38 -0.02 0.51 16 54 H 0.39 0.23 8.74 -74.06 -0.65 -0.42 16 55 H 0.12 -1.69 8.14 -2.39 -0.02 -1.71 16 56 H 0.12 -1.24 8.14 -2.39 -0.02 -1.26 16 Total: 0.00 -25.32 449.62 3.77 -21.55 By element: Atomic # 1 Polarization: -14.78 SS G_CDS: 0.93 Total: -13.85 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 7.29 Total: 17.53 kcal Atomic # 7 Polarization: 0.28 SS G_CDS: -3.17 Total: -2.89 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -3.58 Total: -18.22 kcal Atomic # 14 Polarization: -6.43 SS G_CDS: 2.31 Total: -4.12 kcal Total: -25.32 3.77 -21.55 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18362370_2989392.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.558 kcal (2) G-P(sol) polarization free energy of solvation -25.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds