Wall clock time and date at job start Tue Mar 9 2021 14:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99688 * 2 1 4 4 O 1.20830 * 119.99926 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00074 * 180.02562 * 3 2 1 6 6 N 1.46500 * 112.84965 * 335.49209 * 5 3 2 7 7 C 1.34771 * 120.00264 * 293.59620 * 6 5 3 8 8 O 1.21571 * 119.99876 * 5.02029 * 7 6 5 9 9 C 1.47690 * 120.00279 * 185.02774 * 7 6 5 10 10 C 1.39826 * 120.16771 * 179.71895 * 9 7 6 11 11 F 1.35095 * 120.11354 * 359.97438 * 10 9 7 12 12 C 1.38322 * 119.77613 * 179.76542 * 10 9 7 13 13 C 1.38202 * 120.11942 * 0.48649 * 12 10 9 14 14 C 1.38452 * 120.34027 * 359.79147 * 13 12 10 15 15 C 1.50700 * 119.89398 * 179.97438 * 14 13 12 16 16 O 1.42895 * 109.47479 * 119.97628 * 15 14 13 17 17 Si 1.86300 * 109.46926 * 359.97430 * 15 14 13 18 18 C 1.37863 * 120.21692 * 359.95054 * 14 13 12 19 19 C 1.53781 * 113.61446 * 204.30054 * 5 3 2 20 20 C 1.53780 * 87.07928 * 220.01770 * 19 5 3 21 21 O 1.42904 * 113.61349 * 270.79629 * 20 19 5 22 22 C 1.53010 * 113.61706 * 139.98204 * 20 19 5 23 23 F 1.39896 * 109.46871 * 59.99349 * 22 20 19 24 24 F 1.39900 * 109.46565 * 300.00081 * 22 20 19 25 25 F 1.39895 * 109.47057 * 179.97438 * 22 20 19 26 26 C 1.53779 * 113.61601 * 106.79913 * 5 3 2 27 27 H 1.09001 * 109.47652 * 60.00054 * 1 2 3 28 28 H 1.09004 * 109.46631 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47340 * 299.99630 * 1 2 3 30 30 H 0.97002 * 120.00071 * 113.59098 * 6 5 3 31 31 H 1.08004 * 119.94022 * 180.27830 * 12 10 9 32 32 H 1.08007 * 119.83115 * 179.76126 * 13 12 10 33 33 H 1.09003 * 109.46952 * 239.97877 * 15 14 13 34 34 H 0.96707 * 113.99630 * 300.00128 * 16 15 14 35 35 H 1.48504 * 109.99876 * 180.02562 * 17 15 14 36 36 H 1.48507 * 110.00224 * 301.32113 * 17 15 14 37 37 H 1.07999 * 120.05759 * 180.02562 * 18 14 13 38 38 H 1.09000 * 113.61991 * 105.47126 * 19 5 3 39 39 H 1.09004 * 113.68982 * 334.57391 * 19 5 3 40 40 H 0.96700 * 113.99830 * 178.46941 * 21 20 19 41 41 H 1.09005 * 113.61294 * 25.43629 * 26 5 3 42 42 H 1.08996 * 113.62010 * 254.53101 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 7 4.1989 0.0780 0.5589 7 6 4.0458 -0.2172 1.8650 8 8 3.3096 0.4574 2.5584 9 6 4.7725 -1.3601 2.4539 10 6 4.6208 -1.6659 3.8098 11 9 3.8089 -0.9164 4.5870 12 6 5.3015 -2.7412 4.3519 13 6 6.1367 -3.5046 3.5584 14 6 6.2950 -3.2027 2.2165 15 6 7.2087 -4.0416 1.3606 16 8 6.4587 -4.6257 0.2936 17 14 7.9662 -5.3907 2.3983 18 6 5.6192 -2.1375 1.6605 19 6 4.1143 2.5896 0.5793 20 6 5.1634 2.5563 -0.5446 21 8 6.3551 1.8497 -0.1946 22 6 5.4455 3.9282 -1.1606 23 9 5.9213 4.7949 -0.1708 24 9 4.2657 4.4460 -1.7058 25 9 6.4076 3.7982 -2.1679 26 6 4.1595 1.7142 -1.3496 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 4.7280 -0.5022 -0.0106 31 1 5.1828 -2.9825 5.3979 32 1 6.6689 -4.3408 3.9873 33 1 7.9984 -3.4136 0.9483 34 1 5.7373 -5.1987 0.5877 35 1 8.8700 -6.2248 1.5659 36 1 8.7227 -4.7970 3.5300 37 1 5.7443 -1.9045 0.6134 38 1 4.5399 2.4829 1.5771 39 1 3.4189 3.4256 0.5029 40 1 7.0092 1.8052 -0.9054 41 1 3.4756 2.3101 -1.9541 42 1 4.6216 0.9009 -1.9090 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18364788_12335834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:17:19 Heat of formation + Delta-G solvation = -317.362530 kcal Electronic energy + Delta-G solvation = -39453.066850 eV Core-core repulsion = 33480.561548 eV Total energy + Delta-G solvation = -5972.505303 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.096 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -51.32944 -50.01480 -48.85769 -48.80911 -42.80769 -41.13752 -40.53430 -39.62631 -37.73611 -37.39956 -36.64864 -34.62320 -32.57531 -32.20522 -29.74935 -28.59111 -27.66771 -26.59178 -25.99757 -25.23646 -23.36389 -22.57477 -21.82454 -20.88240 -20.27968 -19.70751 -19.57738 -19.37772 -18.87743 -18.34608 -18.23049 -18.08513 -17.56447 -17.39937 -17.04832 -16.90762 -16.40794 -16.34276 -16.00378 -15.77138 -15.73369 -15.65391 -15.62816 -15.23452 -15.19616 -15.02732 -14.97154 -14.91394 -14.74338 -14.52680 -14.50641 -14.36043 -14.17118 -13.78429 -13.68268 -13.60899 -13.23504 -13.16035 -12.86511 -12.78472 -12.41729 -12.11816 -11.95077 -11.92539 -11.82644 -11.62647 -11.30470 -10.59178 -10.43524 -10.26225 -9.79859 -4.93237 -0.50523 -0.00492 0.76822 1.20576 1.34715 1.46571 1.56351 1.68210 1.70919 2.05261 2.18217 2.37726 2.43935 2.49526 2.62049 2.88435 3.05665 3.16420 3.29317 3.32043 3.45125 3.56989 3.65318 3.70203 4.00047 4.02591 4.11450 4.16518 4.17498 4.21590 4.26843 4.41589 4.47899 4.48234 4.59897 4.60940 4.78685 4.84580 4.96778 4.98798 5.15402 5.16012 5.60754 6.17927 6.26572 6.43659 6.83899 6.90180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.471 3.529 4 O -0.523 6.523 5 C 0.168 3.832 6 N -0.673 5.673 7 C 0.566 3.434 8 O -0.560 6.560 9 C -0.184 4.184 10 C 0.134 3.866 11 F -0.138 7.138 12 C -0.153 4.153 13 C -0.050 4.050 14 C -0.133 4.133 15 C -0.062 4.062 16 O -0.549 6.549 17 Si 0.765 3.235 18 C -0.018 4.018 19 C -0.113 4.113 20 C 0.085 3.915 21 O -0.504 6.504 22 C 0.438 3.562 23 F -0.184 7.184 24 F -0.176 7.176 25 F -0.174 7.174 26 C -0.126 4.126 27 H 0.072 0.928 28 H 0.131 0.869 29 H 0.050 0.950 30 H 0.427 0.573 31 H 0.165 0.835 32 H 0.166 0.834 33 H 0.122 0.878 34 H 0.397 0.603 35 H -0.302 1.302 36 H -0.283 1.283 37 H 0.162 0.838 38 H 0.093 0.907 39 H 0.122 0.878 40 H 0.411 0.589 41 H 0.132 0.868 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 -9.506 -3.649 10.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.313 3.687 4 O -0.411 6.411 5 C 0.078 3.922 6 N -0.329 5.329 7 C 0.355 3.645 8 O -0.438 6.438 9 C -0.188 4.188 10 C 0.114 3.886 11 F -0.116 7.116 12 C -0.172 4.172 13 C -0.068 4.068 14 C -0.134 4.134 15 C -0.173 4.173 16 O -0.358 6.358 17 Si 0.671 3.329 18 C -0.037 4.037 19 C -0.151 4.151 20 C 0.040 3.960 21 O -0.314 6.314 22 C 0.383 3.617 23 F -0.166 7.166 24 F -0.158 7.158 25 F -0.155 7.155 26 C -0.163 4.163 27 H 0.090 0.910 28 H 0.149 0.851 29 H 0.069 0.931 30 H 0.268 0.732 31 H 0.183 0.817 32 H 0.183 0.817 33 H 0.139 0.861 34 H 0.248 0.752 35 H -0.231 1.231 36 H -0.210 1.210 37 H 0.180 0.820 38 H 0.111 0.889 39 H 0.140 0.860 40 H 0.265 0.735 41 H 0.150 0.850 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.323 -8.762 -2.652 9.739 hybrid contribution -0.002 1.374 -0.517 1.468 sum 3.321 -7.388 -3.169 8.698 Atomic orbital electron populations 1.23561 0.74740 1.05778 1.02431 1.86490 1.24894 1.32347 1.83003 1.23812 0.91727 0.81754 0.71398 1.90694 1.66846 1.37246 1.46337 1.20721 0.84517 0.87920 0.99066 1.45089 1.53182 1.25300 1.09292 1.18322 0.80494 0.83795 0.81929 1.90875 1.38789 1.52599 1.61584 1.19872 1.05107 1.00153 0.93658 1.18211 0.91094 0.91356 0.87969 1.91560 1.70498 1.75270 1.74269 1.21367 0.98343 0.94391 1.03072 1.21390 0.94699 0.98117 0.92574 1.20472 1.00323 0.97786 0.94793 1.25037 0.96479 1.01495 0.94242 1.86492 1.50090 1.67007 1.32165 0.93869 0.83481 0.79113 0.76400 1.21195 0.90973 0.91321 1.00187 1.23453 0.95327 0.96860 0.99478 1.23010 0.88618 0.86688 0.97639 1.86680 1.26856 1.73738 1.44152 1.21158 0.74492 0.89331 0.76726 1.93220 1.88558 1.72910 1.61892 1.93216 1.47624 1.88549 1.86381 1.93209 1.64393 1.95968 1.61952 1.24105 0.97056 1.01837 0.93339 0.90960 0.85073 0.93071 0.73166 0.81705 0.81687 0.86089 0.75234 1.23064 1.20957 0.82012 0.88863 0.86029 0.73520 0.84963 0.82771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.05 10.56 113.37 1.20 1.24 16 2 O -0.35 -2.02 10.25 -51.42 -0.53 -2.54 16 3 C 0.47 3.52 6.37 71.23 0.45 3.97 16 4 O -0.52 -6.77 15.80 21.95 0.35 -6.42 16 5 C 0.17 0.19 1.01 3.38 0.00 0.19 16 6 N -0.67 0.94 4.38 -426.93 -1.87 -0.93 16 7 C 0.57 3.35 7.22 86.74 0.63 3.97 16 8 O -0.56 -8.63 14.08 -3.94 -0.06 -8.68 16 9 C -0.18 -0.30 5.88 -20.05 -0.12 -0.42 16 10 C 0.13 0.53 7.29 22.67 0.17 0.69 16 11 F -0.14 -1.57 15.55 44.97 0.70 -0.87 16 12 C -0.15 0.51 10.01 22.28 0.22 0.73 16 13 C -0.05 0.39 8.66 22.31 0.19 0.58 16 14 C -0.13 1.00 5.39 -19.90 -0.11 0.90 16 15 C -0.06 0.56 2.82 71.24 0.20 0.76 16 16 O -0.55 4.72 12.76 -148.98 -1.90 2.82 16 17 Si 0.76 -6.49 29.78 68.60 2.04 -4.45 16 18 C -0.02 0.10 9.09 22.52 0.20 0.31 16 19 C -0.11 -0.41 6.08 31.12 0.19 -0.22 16 20 C 0.08 -0.27 1.35 -10.26 -0.01 -0.28 16 21 O -0.50 3.25 12.91 -148.98 -1.92 1.33 16 22 C 0.44 0.01 2.85 71.99 0.21 0.22 16 23 F -0.18 -0.88 17.18 44.97 0.77 -0.11 16 24 F -0.18 -0.41 15.75 44.97 0.71 0.30 16 25 F -0.17 0.32 16.67 44.97 0.75 1.07 16 26 C -0.13 0.82 6.63 31.12 0.21 1.03 16 27 H 0.07 0.02 8.13 -2.39 -0.02 0.00 16 28 H 0.13 -0.58 8.14 -2.38 -0.02 -0.60 16 29 H 0.05 0.24 8.13 -2.39 -0.02 0.22 16 30 H 0.43 -3.82 6.72 -92.71 -0.62 -4.44 16 31 H 0.17 -1.16 8.06 -2.91 -0.02 -1.19 16 32 H 0.17 -2.12 4.86 -2.91 -0.01 -2.14 16 33 H 0.12 -1.08 7.96 -2.39 -0.02 -1.10 16 34 H 0.40 -6.28 8.70 -74.05 -0.64 -6.92 16 35 H -0.30 -0.09 7.11 99.48 0.71 0.61 16 36 H -0.28 1.05 7.11 99.48 0.71 1.76 16 37 H 0.16 -1.76 6.42 -2.91 -0.02 -1.77 16 38 H 0.09 0.71 7.46 -2.39 -0.02 0.69 16 39 H 0.12 0.70 7.13 -2.39 -0.02 0.68 16 40 H 0.41 -5.93 8.46 -74.06 -0.63 -6.55 16 41 H 0.13 -0.80 7.09 -2.38 -0.02 -0.81 16 42 H 0.15 -2.25 8.10 -2.39 -0.02 -2.26 16 Total: 0.00 -30.63 375.90 1.99 -28.64 By element: Atomic # 1 Polarization: -23.14 SS G_CDS: -0.68 Total: -23.82 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 3.63 Total: 13.67 kcal Atomic # 7 Polarization: 0.94 SS G_CDS: -1.87 Total: -0.93 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -4.06 Total: -13.50 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 2.93 Total: 0.39 kcal Atomic # 14 Polarization: -6.49 SS G_CDS: 2.04 Total: -4.45 kcal Total: -30.63 1.99 -28.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18364788_12335834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -288.719 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -319.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -317.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds