Wall clock time and date at job start Tue Mar 9 2021 14:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34227 * 117.00084 * 2 1 4 4 O 1.20820 * 120.00056 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00200 * 180.02562 * 3 2 1 6 6 N 1.46502 * 112.84594 * 323.54960 * 5 3 2 7 7 C 1.34771 * 120.00172 * 293.37241 * 6 5 3 8 8 O 1.21575 * 120.00091 * 5.17034 * 7 6 5 9 9 C 1.47673 * 119.99832 * 185.17114 * 7 6 5 10 10 C 1.40001 * 120.45304 * 5.42254 * 9 7 6 11 11 N 1.31315 * 121.37440 * 179.72915 * 10 9 7 12 12 C 1.32822 * 121.88844 * 0.51136 * 11 10 9 13 13 N 1.37153 * 132.96254 * 179.81428 * 12 11 10 14 14 C 1.36951 * 110.11247 * 179.71494 * 13 12 11 15 15 C 1.34180 * 109.95220 * 359.97438 * 14 13 12 16 16 C 1.50694 * 126.59979 * 180.02562 * 15 14 13 17 17 O 1.42898 * 109.47472 * 105.00217 * 16 15 14 18 18 Si 1.86301 * 109.47203 * 344.99908 * 16 15 14 19 19 C 1.41016 * 120.08091 * 359.49768 * 12 11 10 20 20 C 1.39283 * 119.62448 * 0.23970 * 19 12 11 21 21 C 1.50698 * 121.03386 * 179.97438 * 20 19 12 22 22 C 1.53786 * 113.61558 * 192.35849 * 5 3 2 23 23 C 1.53787 * 87.07843 * 219.93556 * 22 5 3 24 24 O 1.42904 * 113.60802 * 270.79736 * 23 22 5 25 25 C 1.52995 * 113.61458 * 139.97904 * 23 22 5 26 26 F 1.39907 * 109.46819 * 59.99670 * 25 23 22 27 27 F 1.39902 * 109.47032 * 179.97438 * 25 23 22 28 28 F 1.39893 * 109.47370 * 299.99732 * 25 23 22 29 29 C 1.53778 * 113.69163 * 94.81767 * 5 3 2 30 30 H 1.08995 * 109.47110 * 300.00179 * 1 2 3 31 31 H 1.09001 * 109.46934 * 59.99908 * 1 2 3 32 32 H 1.08997 * 109.47019 * 179.97438 * 1 2 3 33 33 H 0.97002 * 119.99396 * 113.37819 * 6 5 3 34 34 H 1.07996 * 119.31354 * 359.97438 * 10 9 7 35 35 H 0.97004 * 124.94760 * 359.68889 * 13 12 11 36 36 H 1.07998 * 125.02740 * 180.02562 * 14 13 12 37 37 H 1.09000 * 109.46974 * 224.99918 * 16 15 14 38 38 H 0.96704 * 114.00148 * 300.00390 * 17 16 15 39 39 H 1.48501 * 110.00031 * 179.97438 * 18 16 15 40 40 H 1.48495 * 110.00317 * 301.31947 * 18 16 15 41 41 H 1.09003 * 109.47046 * 96.24430 * 21 20 19 42 42 H 1.08992 * 109.47099 * 216.24716 * 21 20 19 43 43 H 1.09006 * 109.46990 * 336.24814 * 21 20 19 44 44 H 1.08998 * 113.60885 * 334.48032 * 22 5 3 45 45 H 1.08991 * 113.61355 * 105.38545 * 22 5 3 46 46 H 0.96705 * 113.99355 * 180.02562 * 24 23 22 47 47 H 1.08994 * 113.61566 * 254.54093 * 29 5 3 48 48 H 1.08996 * 113.61707 * 25.44908 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1915 0.2200 0.8011 7 6 4.0276 0.2035 2.1387 8 8 3.2858 1.0068 2.6702 9 6 4.7491 -0.7903 2.9587 10 6 5.6905 -1.6449 2.3726 11 7 6.3463 -2.5316 3.0855 12 6 6.1447 -2.6702 4.3910 13 7 6.6855 -3.5029 5.3371 14 6 6.1368 -3.2407 6.5642 15 6 5.2390 -2.2488 6.4618 16 6 4.4164 -1.6625 7.5801 17 8 4.9444 -0.3845 7.9405 18 14 4.4762 -2.7978 9.0561 19 6 5.2122 -1.8456 5.0536 20 6 4.5019 -0.8903 4.3305 21 6 3.4974 0.0072 5.0063 22 6 4.1096 2.6816 0.3011 23 6 5.1721 2.4171 -0.7788 24 8 6.3583 1.7993 -0.2754 25 6 5.4638 3.6318 -1.6621 26 9 5.9291 4.6852 -0.8675 27 9 6.4378 3.2968 -2.6089 28 9 4.2917 4.0244 -2.3171 29 6 4.1766 1.4256 -1.4040 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 4.7235 -0.4665 0.3691 34 1 5.8843 -1.5707 1.3127 35 1 7.3585 -4.1794 5.1625 36 1 6.3899 -3.7556 7.4792 37 1 3.3837 -1.5491 7.2505 38 1 5.8622 -0.4095 8.2442 39 1 3.6692 -2.2305 10.1661 40 1 3.9592 -4.1397 8.6860 41 1 3.9689 0.9582 5.2543 42 1 2.6571 0.1824 4.3348 43 1 3.1400 -0.4700 5.9189 44 1 3.4157 3.4819 0.0441 45 1 4.5228 2.7841 1.3044 46 1 7.0305 1.6308 -0.9499 47 1 4.6440 0.5144 -1.7770 48 1 3.5012 1.8827 -2.1271 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18364788_12890568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:18:24 Heat of formation + Delta-G solvation = -221.394663 kcal Electronic energy + Delta-G solvation = -44711.738291 eV Core-core repulsion = 38514.469102 eV Total energy + Delta-G solvation = -6197.269189 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 430.128 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -51.27711 -48.82794 -48.71457 -42.93485 -42.57660 -40.75576 -40.18207 -38.66755 -37.75008 -37.52744 -36.67934 -35.03793 -34.38787 -31.95280 -31.16607 -29.61243 -28.80665 -28.48381 -27.65094 -26.54734 -25.63620 -24.69536 -23.93517 -22.56992 -22.15816 -20.87109 -20.66676 -20.25981 -19.59487 -19.54283 -19.29459 -19.05350 -18.58604 -17.98805 -17.74213 -17.50854 -17.29305 -17.21810 -16.69808 -16.57173 -16.43436 -15.91108 -15.82043 -15.59895 -15.56717 -15.49843 -15.33243 -15.17418 -15.05786 -14.95240 -14.88580 -14.82708 -14.66480 -14.41820 -14.15389 -14.08591 -13.95621 -13.78443 -13.74051 -13.54671 -13.53651 -13.22864 -13.17882 -12.97653 -12.79844 -12.34075 -12.23773 -12.03702 -11.82774 -11.76661 -11.61634 -11.16162 -11.04871 -10.51342 -10.33665 -10.19960 -9.62071 -9.14760 -5.13996 -0.26419 -0.06740 0.97506 1.22561 1.25911 1.36304 1.55104 1.60817 1.63244 1.72279 1.87776 1.93944 2.15476 2.34399 2.45151 2.62896 2.79944 2.92437 3.19731 3.26708 3.31883 3.42734 3.50087 3.60324 3.61513 3.70819 3.76453 3.97761 4.05869 4.08927 4.15780 4.17454 4.22050 4.26698 4.27280 4.36926 4.41181 4.60785 4.63613 4.64093 4.77087 4.95670 5.02527 5.11192 5.20102 5.33438 5.36369 5.51917 5.75571 5.92487 6.08421 6.25601 6.60860 6.66216 6.83768 7.08341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.349 6.349 3 C 0.475 3.525 4 O -0.488 6.488 5 C 0.175 3.825 6 N -0.694 5.694 7 C 0.581 3.419 8 O -0.519 6.519 9 C -0.231 4.231 10 C 0.186 3.814 11 N -0.503 5.503 12 C 0.310 3.690 13 N -0.570 5.570 14 C 0.069 3.931 15 C -0.180 4.180 16 C -0.036 4.036 17 O -0.537 6.537 18 Si 0.686 3.314 19 C -0.150 4.150 20 C 0.087 3.913 21 C -0.124 4.124 22 C -0.100 4.100 23 C 0.067 3.933 24 O -0.501 6.501 25 C 0.438 3.562 26 F -0.170 7.170 27 F -0.180 7.180 28 F -0.171 7.171 29 C -0.145 4.145 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.410 0.590 34 H 0.163 0.837 35 H 0.426 0.574 36 H 0.186 0.814 37 H 0.116 0.884 38 H 0.378 0.622 39 H -0.253 1.253 40 H -0.255 1.255 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.068 0.932 44 H 0.133 0.867 45 H 0.114 0.886 46 H 0.393 0.607 47 H 0.115 0.885 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 -6.633 0.218 7.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.265 6.265 3 C 0.315 3.685 4 O -0.373 6.373 5 C 0.085 3.915 6 N -0.350 5.350 7 C 0.370 3.630 8 O -0.396 6.396 9 C -0.238 4.238 10 C 0.017 3.983 11 N -0.216 5.216 12 C 0.076 3.924 13 N -0.175 5.175 14 C -0.057 4.057 15 C -0.188 4.188 16 C -0.147 4.147 17 O -0.342 6.342 18 Si 0.587 3.413 19 C -0.157 4.157 20 C 0.079 3.921 21 C -0.179 4.179 22 C -0.138 4.138 23 C 0.023 3.977 24 O -0.307 6.307 25 C 0.384 3.616 26 F -0.151 7.151 27 F -0.161 7.161 28 F -0.152 7.152 29 C -0.182 4.182 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.247 0.753 34 H 0.180 0.820 35 H 0.264 0.736 36 H 0.203 0.797 37 H 0.133 0.867 38 H 0.225 0.775 39 H -0.177 1.177 40 H -0.180 1.180 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.086 0.914 44 H 0.151 0.849 45 H 0.133 0.867 46 H 0.244 0.756 47 H 0.133 0.867 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.869 -6.685 1.235 7.379 hybrid contribution 0.072 0.121 -1.312 1.320 sum 2.941 -6.564 -0.077 7.193 Atomic orbital electron populations 1.23349 0.75704 1.04032 1.02867 1.86497 1.23813 1.32700 1.83505 1.23297 0.90719 0.81987 0.72546 1.90709 1.65981 1.36328 1.44304 1.20615 0.85807 0.90977 0.94075 1.45316 1.54008 1.29353 1.06295 1.17896 0.80585 0.83476 0.81054 1.90803 1.37213 1.40038 1.71505 1.20239 1.05489 1.03674 0.94415 1.22495 0.89173 0.87890 0.98763 1.66451 1.27888 1.22975 1.04327 1.18497 0.93536 0.91879 0.88443 1.41517 1.37528 1.32895 1.05578 1.21727 0.96676 0.99056 0.88237 1.20686 1.03514 1.01048 0.93528 1.24513 0.98139 0.91548 1.00543 1.86538 1.32654 1.27756 1.87222 0.95311 0.90538 0.77605 0.77895 1.19452 1.01595 1.00299 0.94337 1.19912 0.91042 0.90319 0.90823 1.21184 0.97986 0.98376 1.00399 1.23477 0.93912 0.95692 1.00742 1.23314 0.88502 0.89878 0.96036 1.86708 1.26058 1.80006 1.37973 1.20970 0.74714 0.86084 0.79882 1.93254 1.88720 1.59723 1.73386 1.93202 1.63876 1.92224 1.66794 1.93220 1.47884 1.91907 1.82183 1.24047 0.97915 1.01448 0.94821 0.91574 0.91610 0.87845 0.75259 0.82002 0.73555 0.79707 0.86683 0.77511 1.17692 1.17957 0.89279 0.88595 0.91360 0.84902 0.86720 0.75637 0.86698 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.01 10.56 101.05 1.07 1.07 16 2 O -0.35 -0.73 10.43 -39.25 -0.41 -1.14 16 3 C 0.47 1.33 6.40 36.01 0.23 1.56 16 4 O -0.49 -2.61 15.65 -18.75 -0.29 -2.90 16 5 C 0.17 0.01 1.00 -132.15 -0.13 -0.12 16 6 N -0.69 0.54 4.48 -48.91 -0.22 0.32 16 7 C 0.58 1.24 7.20 -12.41 -0.09 1.15 16 8 O -0.52 -2.63 12.22 5.30 0.06 -2.57 16 9 C -0.23 -0.42 5.89 -104.82 -0.62 -1.04 16 10 C 0.19 0.07 10.66 -17.11 -0.18 -0.11 16 11 N -0.50 -0.98 10.37 -11.96 -0.12 -1.10 16 12 C 0.31 0.53 8.42 -155.71 -1.31 -0.78 16 13 N -0.57 0.85 6.04 -12.12 -0.07 0.78 16 14 C 0.07 -0.18 10.44 -16.69 -0.17 -0.36 16 15 C -0.18 0.04 5.57 -102.73 -0.57 -0.53 16 16 C -0.04 0.03 2.06 36.00 0.07 0.10 16 17 O -0.54 0.11 12.88 -35.23 -0.45 -0.34 16 18 Si 0.69 -1.63 30.77 -169.99 -5.23 -6.86 16 19 C -0.15 -0.33 6.16 -105.13 -0.65 -0.97 16 20 C 0.09 0.25 5.98 -103.67 -0.62 -0.37 16 21 C -0.12 -0.37 8.70 36.00 0.31 -0.05 16 22 C -0.10 -0.07 6.02 -25.91 -0.16 -0.23 16 23 C 0.07 -0.11 1.36 -89.80 -0.12 -0.23 16 24 O -0.50 1.35 12.92 -35.23 -0.46 0.90 16 25 C 0.44 -0.07 2.85 37.16 0.11 0.04 16 26 F -0.17 -0.31 17.18 2.25 0.04 -0.27 16 27 F -0.18 0.09 16.65 2.25 0.04 0.13 16 28 F -0.17 -0.12 15.75 2.25 0.04 -0.09 16 29 C -0.14 0.42 6.63 -25.92 -0.17 0.25 16 30 H 0.07 0.07 8.13 -51.93 -0.42 -0.35 16 31 H 0.07 -0.02 8.13 -51.93 -0.42 -0.44 16 32 H 0.10 -0.22 8.14 -51.93 -0.42 -0.65 16 33 H 0.41 -1.52 6.78 -40.82 -0.28 -1.80 16 34 H 0.16 -0.53 6.47 -52.49 -0.34 -0.87 16 35 H 0.43 -1.73 8.96 -40.82 -0.37 -2.09 16 36 H 0.19 -1.23 6.36 -52.49 -0.33 -1.56 16 37 H 0.12 0.04 6.05 -51.93 -0.31 -0.28 16 38 H 0.38 -1.56 8.70 45.56 0.40 -1.16 16 39 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 40 H -0.25 0.00 7.11 56.52 0.40 0.40 16 41 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.10 0.40 5.93 -51.93 -0.31 0.09 16 43 H 0.07 0.15 5.06 -51.93 -0.26 -0.11 16 44 H 0.13 0.16 7.09 -51.93 -0.37 -0.20 16 45 H 0.11 0.24 7.45 -51.93 -0.39 -0.14 16 46 H 0.39 -2.41 8.42 45.56 0.38 -2.03 16 47 H 0.11 -0.66 8.09 -51.93 -0.42 -1.08 16 48 H 0.13 -0.37 7.09 -51.93 -0.37 -0.74 16 LS Contribution 410.42 15.07 6.18 6.18 Total: 0.00 -12.88 410.42 -7.75 -20.63 By element: Atomic # 1 Polarization: -9.20 SS G_CDS: -3.85 Total: -13.05 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -3.01 Total: -0.63 kcal Atomic # 7 Polarization: 0.42 SS G_CDS: -0.42 Total: 0.00 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -1.55 Total: -6.05 kcal Atomic # 9 Polarization: -0.34 SS G_CDS: 0.11 Total: -0.22 kcal Atomic # 14 Polarization: -1.63 SS G_CDS: -5.23 Total: -6.86 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -12.88 -7.75 -20.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18364788_12890568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.761 kcal (2) G-P(sol) polarization free energy of solvation -12.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds