Wall clock time and date at job start Tue Mar 9 2021 14:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 116.99957 * 2 1 4 4 O 1.20822 * 120.00008 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99906 * 180.02562 * 3 2 1 6 6 N 1.46496 * 112.84849 * 35.49624 * 5 3 2 7 7 C 1.34775 * 120.00375 * 66.99210 * 6 5 3 8 8 O 1.21588 * 119.99679 * 354.93092 * 7 6 5 9 9 C 1.47566 * 120.00094 * 174.92768 * 7 6 5 10 10 C 1.40212 * 120.12132 * 179.97438 * 9 7 6 11 11 O 1.35653 * 120.00028 * 0.02660 * 10 9 7 12 12 C 1.38813 * 119.99610 * 179.97438 * 10 9 7 13 13 C 1.37770 * 120.24324 * 0.02562 * 12 10 9 14 14 C 1.39842 * 120.24755 * 359.97438 * 13 12 10 15 15 C 1.47817 * 119.99886 * 180.02562 * 14 13 12 16 16 C 1.35935 * 125.93311 * 359.97438 * 15 14 13 17 17 C 1.40969 * 106.74083 * 179.76746 * 16 15 14 18 18 C 1.34710 * 107.03203 * 0.34683 * 17 16 15 19 19 C 1.50695 * 125.66646 * 179.90882 * 18 17 16 20 20 O 1.42894 * 109.47282 * 299.71965 * 19 18 17 21 21 Si 1.86303 * 109.47101 * 179.71778 * 19 18 17 22 22 O 1.34346 * 108.66694 * 359.65118 * 18 17 16 23 23 C 1.39175 * 119.99949 * 0.27318 * 14 13 12 24 24 C 1.53788 * 113.68990 * 264.22567 * 5 3 2 25 25 C 1.53782 * 87.07794 * 220.01049 * 24 5 3 26 26 O 1.42906 * 113.68703 * 270.86858 * 25 24 5 27 27 C 1.52995 * 113.61103 * 139.98705 * 25 24 5 28 28 F 1.39901 * 109.47479 * 322.49541 * 27 25 24 29 29 F 1.39898 * 109.47568 * 82.50059 * 27 25 24 30 30 F 1.39911 * 109.46948 * 202.49846 * 27 25 24 31 31 C 1.53777 * 87.08601 * 25.43272 * 25 24 5 32 32 H 1.09004 * 109.47052 * 300.00078 * 1 2 3 33 33 H 1.09004 * 109.47095 * 59.99563 * 1 2 3 34 34 H 1.09000 * 109.46955 * 179.97438 * 1 2 3 35 35 H 0.97005 * 119.99707 * 246.98606 * 6 5 3 36 36 H 0.96706 * 113.99514 * 269.97183 * 11 10 9 37 37 H 1.08003 * 119.87794 * 180.02562 * 12 10 9 38 38 H 1.08003 * 119.87252 * 179.97438 * 13 12 10 39 39 H 1.07994 * 126.62468 * 359.94170 * 16 15 14 40 40 H 1.07997 * 126.48643 * 180.23144 * 17 16 15 41 41 H 1.08997 * 109.47063 * 59.72505 * 19 18 17 42 42 H 0.96700 * 113.99936 * 300.00068 * 20 19 18 43 43 H 1.48501 * 109.99746 * 58.68594 * 21 19 18 44 44 H 1.48502 * 109.99906 * 180.02562 * 21 19 18 45 45 H 1.07998 * 120.12187 * 179.73083 * 23 14 13 46 46 H 1.09001 * 113.61495 * 334.55616 * 24 5 3 47 47 H 1.08999 * 113.60782 * 105.45696 * 24 5 3 48 48 H 0.96695 * 114.00542 * 277.53777 * 26 25 24 49 49 H 1.08993 * 113.61483 * 220.02134 * 31 25 24 50 50 H 1.08998 * 113.68716 * 89.12496 * 31 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1916 0.2072 -0.7849 7 6 4.0339 0.1731 -2.1230 8 8 3.2987 0.9729 -2.6690 9 6 4.7536 -0.8348 -2.9253 10 6 4.5911 -0.8729 -4.3175 11 8 3.7714 0.0182 -4.9292 12 6 5.2697 -1.8218 -5.0697 13 6 6.1038 -2.7288 -4.4536 14 6 6.2735 -2.7000 -3.0658 15 6 7.1702 -3.6754 -2.4104 16 6 7.8851 -4.6476 -3.0363 17 6 8.5997 -5.3350 -2.0342 18 6 8.2828 -4.7593 -0.8583 19 6 8.8119 -5.1697 0.4917 20 8 8.4472 -6.5262 0.7541 21 14 8.0854 -4.0661 1.8052 22 8 7.4210 -3.7549 -1.0896 23 6 5.5940 -1.7563 -2.3011 24 6 4.1765 1.4484 1.4003 25 6 5.1720 2.4296 0.7591 26 8 6.3583 1.8037 0.2661 27 6 5.4637 3.6584 1.6227 28 9 4.2915 4.0616 2.2712 29 9 6.4372 3.3387 2.5752 30 9 5.9291 4.6988 0.8113 31 6 4.1096 2.6765 -0.3249 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 4.7192 -0.4753 -0.3412 36 1 2.8560 -0.2823 -5.0125 37 1 5.1434 -1.8491 -6.1420 38 1 6.6286 -3.4648 -5.0446 39 1 7.9042 -4.8518 -4.0966 40 1 9.2723 -6.1670 -2.1812 41 1 9.8980 -5.0773 0.4997 42 1 7.4929 -6.6823 0.7621 43 1 6.6034 -4.1587 1.7836 44 1 8.5999 -4.4602 3.1413 45 1 5.7202 -1.7351 -1.2287 46 1 3.5009 1.9171 2.1159 47 1 4.6438 0.5432 1.7881 48 1 7.0303 1.6458 0.9432 49 1 4.5230 2.7628 -1.3297 50 1 3.4152 3.4809 -0.0823 There are 83 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 83 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18364788_13259648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:18:42 Heat of formation + Delta-G solvation = -289.617555 kcal Electronic energy + Delta-G solvation = -48798.583507 eV Core-core repulsion = 42119.154868 eV Total energy + Delta-G solvation = -6679.428639 eV No. of doubly occupied orbitals = 83 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 458.120 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -51.28524 -48.83565 -48.72202 -43.75901 -42.73945 -41.31395 -40.54487 -39.32800 -38.28221 -37.87143 -37.57106 -36.60620 -34.61021 -34.15614 -32.81015 -32.37371 -30.14795 -29.68130 -28.56318 -27.67768 -26.48061 -25.93207 -25.15417 -23.68085 -23.10181 -22.53881 -22.10322 -21.31754 -20.78805 -20.30057 -19.83860 -19.55906 -19.48308 -19.21548 -18.84023 -18.44591 -18.01872 -17.69421 -17.54180 -17.51308 -17.25132 -16.79848 -16.61724 -16.46966 -16.35200 -15.90428 -15.81579 -15.72436 -15.59001 -15.51859 -15.19691 -15.18027 -14.97858 -14.91194 -14.86685 -14.71438 -14.52797 -14.45726 -14.36966 -14.11855 -14.02615 -13.86864 -13.83649 -13.60627 -13.55089 -13.30021 -13.21921 -13.18727 -12.95795 -12.82379 -12.33233 -12.14930 -11.89826 -11.85473 -11.81464 -11.64614 -11.12377 -10.91876 -10.90046 -10.51504 -10.43427 -10.28815 -8.96542 -5.11222 -0.62529 -0.28882 0.70582 0.93189 1.03006 1.23432 1.38133 1.41882 1.58161 1.60825 1.67009 1.82980 1.86678 2.13759 2.31865 2.43413 2.55964 2.61153 2.87705 3.02561 3.06842 3.15809 3.21440 3.30391 3.37368 3.52317 3.65368 3.81005 3.88938 3.91985 3.97105 4.05731 4.10017 4.12635 4.13887 4.22610 4.24630 4.31231 4.37359 4.53267 4.55655 4.56644 4.62799 4.71069 4.77524 4.94555 5.03461 5.04732 5.09509 5.28606 5.34989 5.38659 5.90599 5.92091 6.16696 6.18647 6.60830 6.61602 7.00977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.350 6.350 3 C 0.475 3.525 4 O -0.487 6.487 5 C 0.174 3.826 6 N -0.695 5.695 7 C 0.570 3.430 8 O -0.506 6.506 9 C -0.161 4.161 10 C 0.182 3.818 11 O -0.475 6.475 12 C -0.149 4.149 13 C -0.051 4.051 14 C -0.034 4.034 15 C 0.036 3.964 16 C -0.188 4.188 17 C -0.169 4.169 18 C -0.050 4.050 19 C -0.035 4.035 20 O -0.520 6.520 21 Si 0.699 3.301 22 O -0.165 6.165 23 C -0.049 4.049 24 C -0.145 4.145 25 C 0.067 3.933 26 O -0.500 6.500 27 C 0.439 3.561 28 F -0.171 7.171 29 F -0.179 7.179 30 F -0.169 7.169 31 C -0.100 4.100 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.410 0.590 36 H 0.400 0.600 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.137 0.863 42 H 0.380 0.620 43 H -0.255 1.255 44 H -0.249 1.249 45 H 0.136 0.864 46 H 0.129 0.871 47 H 0.114 0.886 48 H 0.393 0.607 49 H 0.115 0.885 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.519 -5.306 0.985 5.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.266 6.266 3 C 0.314 3.686 4 O -0.372 6.372 5 C 0.084 3.916 6 N -0.350 5.350 7 C 0.358 3.642 8 O -0.380 6.380 9 C -0.164 4.164 10 C 0.135 3.865 11 O -0.286 6.286 12 C -0.167 4.167 13 C -0.069 4.069 14 C -0.034 4.034 15 C -0.014 4.014 16 C -0.207 4.207 17 C -0.189 4.189 18 C -0.100 4.100 19 C -0.145 4.145 20 O -0.326 6.326 21 Si 0.598 3.402 22 O -0.063 6.063 23 C -0.068 4.068 24 C -0.183 4.183 25 C 0.023 3.977 26 O -0.307 6.307 27 C 0.384 3.616 28 F -0.152 7.152 29 F -0.160 7.160 30 F -0.150 7.150 31 C -0.138 4.138 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.248 0.752 36 H 0.259 0.741 37 H 0.164 0.836 38 H 0.158 0.842 39 H 0.172 0.828 40 H 0.172 0.828 41 H 0.154 0.846 42 H 0.229 0.771 43 H -0.179 1.179 44 H -0.173 1.173 45 H 0.154 0.846 46 H 0.147 0.853 47 H 0.133 0.867 48 H 0.244 0.756 49 H 0.133 0.867 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.955 -3.859 0.992 4.098 hybrid contribution -0.400 -1.567 0.436 1.674 sum 0.556 -5.426 1.427 5.638 Atomic orbital electron populations 1.23356 0.75675 1.04030 1.02914 1.86497 1.23842 1.32733 1.83545 1.23300 0.90707 0.81988 0.72567 1.90713 1.65950 1.36307 1.44259 1.20635 0.85794 0.90780 0.94377 1.45342 1.54234 1.28949 1.06517 1.17991 0.81115 0.83923 0.81209 1.90880 1.36481 1.39811 1.70871 1.20095 1.03286 0.99380 0.93662 1.18586 0.92117 0.87464 0.88311 1.84762 1.23491 1.41568 1.78828 1.21392 0.99156 0.94791 1.01353 1.21139 0.95782 0.97603 0.92389 1.17557 0.97860 0.95331 0.92658 1.20253 1.01311 0.99200 0.80601 1.21862 1.00390 0.97507 1.00959 1.21568 1.03421 1.02775 0.91087 1.22835 0.96717 0.92010 0.98410 1.24332 1.04931 0.89462 0.95743 1.86672 1.29177 1.24315 1.92481 0.94602 0.80723 0.87664 0.77248 1.83912 1.51500 1.45483 1.25358 1.21280 0.93343 0.92186 0.99963 1.24059 0.97971 1.01486 0.94763 1.23300 0.88518 0.89635 0.96237 1.86711 1.26041 1.79627 1.38322 1.20956 0.74725 0.86321 0.79613 1.93222 1.47897 1.91647 1.82441 1.93202 1.63886 1.92600 1.66358 1.93257 1.88711 1.60656 1.72423 1.23473 0.93962 0.95653 1.00743 0.91577 0.91555 0.87838 0.75238 0.74143 0.83598 0.84191 0.82815 0.82826 0.84571 0.77130 1.17855 1.17294 0.84593 0.85332 0.86726 0.75602 0.86704 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 101.05 1.07 1.06 16 2 O -0.35 -0.60 10.41 -39.26 -0.41 -1.01 16 3 C 0.47 1.22 6.42 36.01 0.23 1.45 16 4 O -0.49 -2.49 15.66 -18.75 -0.29 -2.78 16 5 C 0.17 0.00 1.00 -132.15 -0.13 -0.13 16 6 N -0.69 0.56 4.47 -48.94 -0.22 0.34 16 7 C 0.57 1.02 7.24 -12.46 -0.09 0.93 16 8 O -0.51 -2.57 13.86 -16.67 -0.23 -2.80 16 9 C -0.16 -0.08 5.88 -104.89 -0.62 -0.69 16 10 C 0.18 0.10 6.72 -38.63 -0.26 -0.16 16 11 O -0.47 -0.68 11.55 -40.61 -0.47 -1.15 16 12 C -0.15 0.20 9.96 -39.54 -0.39 -0.19 16 13 C -0.05 0.10 9.54 -39.15 -0.37 -0.28 16 14 C -0.03 0.03 5.87 -105.03 -0.62 -0.59 16 15 C 0.04 -0.01 7.03 -36.49 -0.26 -0.27 16 16 C -0.19 0.13 10.26 -39.37 -0.40 -0.27 16 17 C -0.17 0.06 10.77 -39.80 -0.43 -0.37 16 18 C -0.05 0.03 6.22 -35.56 -0.22 -0.19 16 19 C -0.04 0.06 2.98 36.00 0.11 0.17 16 20 O -0.52 0.30 12.87 -35.23 -0.45 -0.15 16 21 Si 0.70 -1.79 32.10 -169.99 -5.46 -7.25 16 22 O -0.16 0.07 8.78 4.55 0.04 0.11 16 23 C -0.05 0.06 9.20 -38.78 -0.36 -0.30 16 24 C -0.14 0.43 6.64 -25.91 -0.17 0.26 16 25 C 0.07 -0.11 1.36 -89.81 -0.12 -0.24 16 26 O -0.50 1.42 12.92 -35.23 -0.46 0.96 16 27 C 0.44 -0.15 2.85 37.16 0.11 -0.04 16 28 F -0.17 -0.09 15.76 2.25 0.04 -0.06 16 29 F -0.18 0.15 16.65 2.25 0.04 0.19 16 30 F -0.17 -0.28 17.18 2.25 0.04 -0.24 16 31 C -0.10 -0.07 6.02 -25.92 -0.16 -0.23 16 32 H 0.07 -0.04 8.13 -51.93 -0.42 -0.46 16 33 H 0.07 0.03 8.13 -51.93 -0.42 -0.39 16 34 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 35 H 0.41 -1.42 6.71 -40.82 -0.27 -1.69 16 36 H 0.40 -0.86 9.06 45.56 0.41 -0.45 16 37 H 0.15 -0.45 8.06 -52.48 -0.42 -0.87 16 38 H 0.14 -0.56 6.96 -52.48 -0.37 -0.93 16 39 H 0.15 -0.42 7.24 -52.49 -0.38 -0.80 16 40 H 0.15 -0.19 8.06 -52.49 -0.42 -0.61 16 41 H 0.14 -0.42 7.96 -51.93 -0.41 -0.83 16 42 H 0.38 -1.26 8.70 45.56 0.40 -0.86 16 43 H -0.25 0.10 7.11 56.52 0.40 0.50 16 44 H -0.25 -0.06 7.11 56.52 0.40 0.34 16 45 H 0.14 -0.43 6.25 -52.49 -0.33 -0.76 16 46 H 0.13 -0.40 7.09 -51.93 -0.37 -0.76 16 47 H 0.11 -0.67 8.09 -51.93 -0.42 -1.09 16 48 H 0.39 -2.55 8.42 45.56 0.38 -2.16 16 49 H 0.11 0.27 7.41 -51.93 -0.38 -0.11 16 50 H 0.13 0.16 7.09 -51.93 -0.37 -0.21 16 LS Contribution 444.46 15.07 6.70 6.70 Total: 0.00 -12.41 444.46 -7.64 -20.06 By element: Atomic # 1 Polarization: -9.43 SS G_CDS: -3.42 Total: -12.85 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -3.09 Total: -0.06 kcal Atomic # 7 Polarization: 0.56 SS G_CDS: -0.22 Total: 0.34 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -2.27 Total: -6.82 kcal Atomic # 9 Polarization: -0.23 SS G_CDS: 0.11 Total: -0.12 kcal Atomic # 14 Polarization: -1.79 SS G_CDS: -5.46 Total: -7.25 kcal Total LS contribution 6.70 Total: 6.70 kcal Total: -12.41 -7.64 -20.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18364788_13259648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -269.558 kcal (2) G-P(sol) polarization free energy of solvation -12.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -281.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -289.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds