Wall clock time and date at job start Tue Mar 9 2021 14:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34236 * 116.99923 * 2 1 4 4 O 1.20828 * 119.99687 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00015 * 180.02562 * 3 2 1 6 6 N 1.46500 * 112.84691 * 324.46203 * 5 3 2 7 7 C 1.34771 * 120.00269 * 294.08654 * 6 5 3 8 8 O 1.21556 * 120.00125 * 354.99869 * 7 6 5 9 9 C 1.47844 * 120.00262 * 175.27493 * 7 6 5 10 10 C 1.39517 * 120.55472 * 359.44713 * 9 7 6 11 11 N 1.31700 * 120.56355 * 179.72778 * 10 9 7 12 12 C 1.31922 * 121.87730 * 0.53348 * 11 10 9 13 13 C 1.38355 * 121.08452 * 359.75526 * 12 11 10 14 14 C 1.50697 * 120.35196 * 179.97438 * 13 12 11 15 15 O 1.42903 * 109.46785 * 245.02056 * 14 13 12 16 16 Si 1.86295 * 109.47188 * 5.01574 * 14 13 12 17 17 C 1.38360 * 119.29754 * 359.97178 * 13 12 11 18 18 C 1.53780 * 113.61303 * 193.27010 * 5 3 2 19 19 C 1.53775 * 87.07819 * 219.93318 * 18 5 3 20 20 O 1.42898 * 113.61460 * 270.79878 * 19 18 5 21 21 C 1.53000 * 113.61452 * 139.98263 * 19 18 5 22 22 F 1.39898 * 109.47426 * 59.99728 * 21 19 18 23 23 F 1.39902 * 109.47226 * 179.97438 * 21 19 18 24 24 F 1.39900 * 109.47027 * 299.99664 * 21 19 18 25 25 C 1.53777 * 87.08594 * 25.43131 * 19 18 5 26 26 H 1.09001 * 109.46834 * 60.00452 * 1 2 3 27 27 H 1.09004 * 109.46567 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47355 * 300.00028 * 1 2 3 29 29 H 0.96998 * 119.99699 * 114.08103 * 6 5 3 30 30 H 1.08000 * 119.71961 * 359.97438 * 10 9 7 31 31 H 1.07997 * 119.45870 * 179.72681 * 12 11 10 32 32 H 1.08999 * 109.47605 * 125.02078 * 14 13 12 33 33 H 0.96698 * 113.99813 * 179.97438 * 15 14 13 34 34 H 1.48498 * 110.00236 * 178.68143 * 16 14 13 35 35 H 1.48507 * 110.00277 * 300.00739 * 16 14 13 36 36 H 1.07999 * 120.85262 * 180.02562 * 17 13 12 37 37 H 1.09003 * 113.61062 * 334.47634 * 18 5 3 38 38 H 1.09002 * 113.61271 * 105.38184 * 18 5 3 39 39 H 0.96704 * 114.00252 * 180.02562 * 20 19 18 40 40 H 1.08992 * 113.61930 * 220.02062 * 25 19 18 41 41 H 1.09008 * 113.61346 * 89.11179 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2750 -0.0006 6 7 4.1922 0.2075 0.7837 7 6 4.0176 0.1614 2.1192 8 8 3.4177 1.0546 2.6849 9 6 4.5610 -0.9722 2.8972 10 6 5.2465 -2.0064 2.2592 11 7 5.7353 -3.0137 2.9527 12 6 5.5912 -3.0934 4.2616 13 6 4.9192 -2.1113 4.9673 14 6 4.7639 -2.2192 6.4624 15 8 3.3805 -2.3690 6.7878 16 14 5.7108 -3.7000 7.0798 17 6 4.3915 -1.0289 4.2859 18 6 4.1098 2.6767 0.3229 19 6 5.1714 2.4294 -0.7618 20 8 6.3580 1.8037 -0.2694 21 6 5.4625 3.6581 -1.6259 22 9 5.9284 4.6986 -0.8152 23 9 6.4357 3.3382 -2.5786 24 9 4.2898 4.0610 -2.2737 25 6 4.1755 1.4480 -1.4019 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 4.7322 -0.4662 0.3416 30 1 5.3809 -1.9788 1.1879 31 1 6.0042 -3.9393 4.7908 32 1 5.1525 -1.3168 6.9342 33 1 3.2055 -2.4450 7.7358 34 1 5.5917 -3.7993 8.5567 35 1 5.1905 -4.9370 6.4439 36 1 3.8626 -0.2478 4.8117 37 1 3.4157 3.4810 0.0792 38 1 4.5239 2.7633 1.3275 39 1 7.0297 1.6459 -0.9469 40 1 4.6426 0.5428 -1.7898 41 1 3.4993 1.9165 -2.1171 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18364788_13287814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:19:03 Heat of formation + Delta-G solvation = -262.823529 kcal Electronic energy + Delta-G solvation = -36333.136603 eV Core-core repulsion = 30767.024353 eV Total energy + Delta-G solvation = -5566.112250 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.101 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -51.29645 -48.82766 -48.77378 -42.83549 -41.69669 -40.73196 -39.78846 -38.01167 -37.75083 -36.64679 -34.71206 -33.88676 -32.91950 -29.82848 -28.59298 -27.59282 -27.29526 -26.22743 -25.29118 -23.80166 -22.61862 -21.99851 -20.90265 -20.25468 -19.63801 -19.54549 -19.24052 -18.91997 -18.66962 -18.18150 -18.07025 -17.70264 -17.49441 -17.11735 -16.37012 -16.36417 -16.21905 -15.81465 -15.61869 -15.51169 -15.37441 -15.20253 -15.14834 -14.95365 -14.92158 -14.83409 -14.70350 -14.48654 -14.31544 -14.15072 -14.13136 -13.87881 -13.71211 -13.61277 -13.24728 -12.77377 -12.70783 -12.41435 -12.10734 -11.96811 -11.91201 -11.57908 -11.51280 -11.09181 -10.74979 -10.60347 -10.48815 -10.24876 -4.94282 -0.60132 -0.02427 0.74360 1.20942 1.22426 1.48107 1.54748 1.59542 1.70382 1.93425 2.23068 2.43072 2.48284 2.58037 2.66181 2.89773 3.06501 3.19143 3.24036 3.35304 3.49556 3.57617 3.66006 3.69021 3.76413 4.06293 4.12065 4.15497 4.19993 4.21269 4.23212 4.30152 4.46273 4.48547 4.56921 4.59262 4.81693 4.91519 4.98663 5.13557 5.31470 6.16003 6.31906 6.42436 6.51823 6.64719 6.86202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.468 3.532 4 O -0.520 6.520 5 C 0.168 3.832 6 N -0.672 5.672 7 C 0.575 3.425 8 O -0.562 6.562 9 C -0.194 4.194 10 C 0.153 3.847 11 N -0.490 5.490 12 C 0.130 3.870 13 C -0.138 4.138 14 C -0.087 4.087 15 O -0.559 6.559 16 Si 0.771 3.229 17 C -0.001 4.001 18 C -0.112 4.112 19 C 0.084 3.916 20 O -0.504 6.504 21 C 0.437 3.563 22 F -0.185 7.185 23 F -0.174 7.174 24 F -0.177 7.177 25 C -0.127 4.127 26 H 0.072 0.928 27 H 0.131 0.869 28 H 0.051 0.949 29 H 0.429 0.571 30 H 0.198 0.802 31 H 0.180 0.820 32 H 0.099 0.901 33 H 0.399 0.601 34 H -0.282 1.282 35 H -0.287 1.287 36 H 0.136 0.864 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.411 0.589 40 H 0.157 0.843 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.057 -5.700 -2.067 7.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.309 3.691 4 O -0.407 6.407 5 C 0.079 3.921 6 N -0.327 5.327 7 C 0.363 3.637 8 O -0.441 6.441 9 C -0.200 4.200 10 C -0.006 4.006 11 N -0.198 5.198 12 C -0.025 4.025 13 C -0.140 4.140 14 C -0.196 4.196 15 O -0.370 6.370 16 Si 0.675 3.325 17 C -0.028 4.028 18 C -0.151 4.151 19 C 0.039 3.961 20 O -0.314 6.314 21 C 0.382 3.618 22 F -0.166 7.166 23 F -0.155 7.155 24 F -0.159 7.159 25 C -0.165 4.165 26 H 0.090 0.910 27 H 0.149 0.851 28 H 0.070 0.930 29 H 0.271 0.729 30 H 0.215 0.785 31 H 0.197 0.803 32 H 0.117 0.883 33 H 0.250 0.750 34 H -0.208 1.208 35 H -0.214 1.214 36 H 0.154 0.846 37 H 0.139 0.861 38 H 0.115 0.885 39 H 0.265 0.735 40 H 0.174 0.826 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.446 -6.130 -1.822 7.789 hybrid contribution -1.550 1.364 0.582 2.145 sum 2.896 -4.766 -1.241 5.713 Atomic orbital electron populations 1.23573 0.74759 1.05790 1.02506 1.86498 1.24867 1.32258 1.83129 1.23878 0.91784 0.81758 0.71647 1.90698 1.66887 1.37348 1.45815 1.20719 0.84320 0.90513 0.96593 1.45089 1.52468 1.29462 1.05727 1.18227 0.78377 0.85045 0.82056 1.90837 1.43063 1.39453 1.70764 1.20819 1.06066 0.98140 0.94926 1.23508 0.88811 0.86586 1.01648 1.67840 1.19522 1.24299 1.08104 1.23199 0.92629 0.96425 0.90279 1.20445 1.01242 0.95905 0.96439 1.25019 0.88244 1.12605 0.93693 1.86541 1.23272 1.95748 1.31442 0.94121 0.87346 0.73540 0.77521 1.21635 0.91793 0.96514 0.92821 1.23448 0.95015 0.95954 1.00643 1.23032 0.88770 0.89402 0.94878 1.86681 1.26154 1.79167 1.39381 1.21184 0.74514 0.86367 0.79699 1.93222 1.88876 1.61545 1.72946 1.93212 1.63672 1.92480 1.66175 1.93210 1.48240 1.91796 1.82616 1.24118 0.96954 1.02677 0.92705 0.90958 0.85080 0.93010 0.72931 0.78524 0.80320 0.88318 0.75039 1.20840 1.21380 0.84584 0.86139 0.88493 0.73501 0.82556 0.84998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.01 10.56 113.37 1.20 1.21 16 2 O -0.35 -1.36 10.42 -51.47 -0.54 -1.89 16 3 C 0.47 2.80 6.59 71.24 0.47 3.27 16 4 O -0.52 -6.32 15.66 21.96 0.34 -5.98 16 5 C 0.17 -0.08 1.00 3.38 0.00 -0.07 16 6 N -0.67 2.09 4.48 -426.76 -1.91 0.17 16 7 C 0.57 2.33 7.33 86.79 0.64 2.97 16 8 O -0.56 -7.17 14.96 -3.89 -0.06 -7.23 16 9 C -0.19 -0.33 5.89 -19.99 -0.12 -0.45 16 10 C 0.15 -0.42 10.71 85.02 0.91 0.49 16 11 N -0.49 -0.16 10.35 -194.76 -2.01 -2.17 16 12 C 0.13 -0.05 9.84 84.71 0.83 0.78 16 13 C -0.14 -0.13 5.38 -19.81 -0.11 -0.24 16 14 C -0.09 0.20 2.81 71.24 0.20 0.39 16 15 O -0.56 -0.69 12.82 -148.98 -1.91 -2.60 16 16 Si 0.77 -3.82 29.88 68.60 2.05 -1.77 16 17 C 0.00 0.00 9.38 22.73 0.21 0.21 16 18 C -0.11 -0.25 5.98 31.12 0.19 -0.06 16 19 C 0.08 -0.37 1.36 -10.27 -0.01 -0.38 16 20 O -0.50 3.85 12.92 -148.98 -1.92 1.92 16 21 C 0.44 -0.46 2.85 71.98 0.21 -0.26 16 22 F -0.18 -0.69 17.18 44.97 0.77 0.08 16 23 F -0.17 0.48 16.65 44.97 0.75 1.23 16 24 F -0.18 -0.21 15.75 44.97 0.71 0.50 16 25 C -0.13 1.03 6.63 31.12 0.21 1.23 16 26 H 0.07 -0.04 8.13 -2.39 -0.02 -0.06 16 27 H 0.13 -0.69 8.14 -2.39 -0.02 -0.71 16 28 H 0.05 0.18 8.13 -2.39 -0.02 0.16 16 29 H 0.43 -4.73 6.75 -92.71 -0.63 -5.36 16 30 H 0.20 -2.24 6.44 -2.91 -0.02 -2.25 16 31 H 0.18 -0.85 4.87 -2.91 -0.01 -0.87 16 32 H 0.10 -0.56 7.96 -2.39 -0.02 -0.58 16 33 H 0.40 -2.73 8.74 -74.06 -0.65 -3.38 16 34 H -0.28 0.15 7.11 99.48 0.71 0.86 16 35 H -0.29 -0.35 7.05 99.48 0.70 0.35 16 36 H 0.14 0.84 7.74 -2.91 -0.02 0.82 16 37 H 0.12 0.54 7.09 -2.39 -0.02 0.52 16 38 H 0.10 0.61 7.20 -2.39 -0.02 0.59 16 39 H 0.41 -6.33 8.42 -74.05 -0.62 -6.96 16 40 H 0.16 -2.53 8.09 -2.39 -0.02 -2.55 16 41 H 0.13 -1.03 7.09 -2.38 -0.02 -1.04 16 Total: 0.00 -29.51 366.31 0.40 -29.11 By element: Atomic # 1 Polarization: -19.78 SS G_CDS: -0.69 Total: -20.47 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 4.82 Total: 9.09 kcal Atomic # 7 Polarization: 1.93 SS G_CDS: -3.93 Total: -2.00 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -4.08 Total: -15.78 kcal Atomic # 9 Polarization: -0.42 SS G_CDS: 2.23 Total: 1.81 kcal Atomic # 14 Polarization: -3.82 SS G_CDS: 2.05 Total: -1.77 kcal Total: -29.51 0.40 -29.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18364788_13287814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -233.714 kcal (2) G-P(sol) polarization free energy of solvation -29.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -263.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds