Wall clock time and date at job start Tue Mar 9 2021 14:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00059 * 2 1 4 4 O 1.20826 * 120.00005 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00404 * 179.97438 * 3 2 1 6 6 N 1.46497 * 112.84996 * 324.47046 * 5 3 2 7 7 C 1.34788 * 119.99938 * 294.08592 * 6 5 3 8 8 O 1.21609 * 119.99508 * 355.00009 * 7 6 5 9 9 C 1.47375 * 120.00349 * 175.00049 * 7 6 5 10 10 C 1.36406 * 127.19283 * 180.02562 * 9 7 6 11 11 C 1.50693 * 125.80383 * 359.96124 * 10 9 7 12 12 O 1.33661 * 108.39837 * 179.69879 * 10 9 7 13 13 C 1.34214 * 110.90550 * 0.25865 * 12 10 9 14 14 C 1.50696 * 125.43559 * 179.97438 * 13 12 10 15 15 O 1.42905 * 109.47228 * 245.02775 * 14 13 12 16 16 Si 1.86299 * 109.47366 * 5.03269 * 14 13 12 17 17 C 1.34180 * 109.12565 * 0.02562 * 13 12 10 18 18 C 1.53775 * 113.61998 * 193.26983 * 5 3 2 19 19 C 1.53781 * 87.08370 * 219.93544 * 18 5 3 20 20 O 1.42902 * 113.61458 * 270.88093 * 19 18 5 21 21 C 1.53001 * 113.61427 * 139.98072 * 19 18 5 22 22 F 1.39900 * 109.47375 * 59.99639 * 21 19 18 23 23 F 1.39897 * 109.47147 * 180.02562 * 21 19 18 24 24 F 1.39902 * 109.47051 * 299.99715 * 21 19 18 25 25 C 1.53780 * 87.08085 * 25.43100 * 19 18 5 26 26 H 1.08996 * 109.47322 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47373 * 300.00624 * 1 2 3 28 28 H 1.09002 * 109.46962 * 60.00623 * 1 2 3 29 29 H 0.97000 * 120.00526 * 114.08813 * 6 5 3 30 30 H 1.09005 * 109.47867 * 179.72188 * 11 10 9 31 31 H 1.09008 * 109.47100 * 299.71690 * 11 10 9 32 32 H 1.08995 * 109.47565 * 59.71540 * 11 10 9 33 33 H 1.09006 * 109.47174 * 125.03004 * 14 13 12 34 34 H 0.96701 * 113.99951 * 60.00429 * 15 14 13 35 35 H 1.48499 * 110.00323 * 58.67507 * 16 14 13 36 36 H 1.48495 * 110.00065 * 180.02562 * 16 14 13 37 37 H 1.07993 * 127.02271 * 180.02562 * 17 13 12 38 38 H 1.08999 * 113.61464 * 334.48745 * 18 5 3 39 39 H 1.08998 * 113.61837 * 105.29880 * 18 5 3 40 40 H 0.96701 * 113.99612 * 180.02562 * 20 19 18 41 41 H 1.08999 * 113.61489 * 220.01586 * 25 19 18 42 42 H 1.08997 * 113.61288 * 89.11724 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 7 4.1916 0.2077 0.7856 7 6 4.0159 0.1621 2.1212 8 8 3.4152 1.0558 2.6862 9 6 4.5518 -0.9707 2.8967 10 6 4.4596 -1.1650 4.2437 11 6 3.7800 -0.2429 5.2228 12 8 5.0694 -2.3151 4.5468 13 6 5.5724 -2.8951 3.4459 14 6 6.3242 -4.2007 3.4121 15 8 7.6722 -3.9637 3.0014 16 14 6.3178 -4.9653 5.1109 17 6 5.3000 -2.1264 2.3804 18 6 4.1095 2.6767 0.3239 19 6 5.1720 2.4291 -0.7599 20 8 6.3575 1.8018 -0.2667 21 6 5.4637 3.6574 -1.6242 22 9 5.9290 4.6983 -0.8135 23 9 6.4368 3.3369 -2.5769 24 9 4.2914 4.0601 -2.2731 25 6 4.1765 1.4474 -1.4004 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 4.7321 -0.4660 0.3442 30 1 3.8604 -0.6570 6.2280 31 1 4.2598 0.7355 5.1936 32 1 2.7284 -0.1399 4.9553 33 1 5.8434 -4.8787 2.7068 34 1 8.1619 -3.3675 3.5844 35 1 4.9207 -5.1874 5.5627 36 1 7.0566 -6.2532 5.0911 37 1 5.5703 -2.3197 1.3529 38 1 3.4157 3.4810 0.0795 39 1 4.5215 2.7642 1.3292 40 1 7.0296 1.6438 -0.9438 41 1 4.6439 0.5421 -1.7877 42 1 3.5009 1.9157 -2.1163 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18364788_13308374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:19:10 Heat of formation + Delta-G solvation = -285.932227 kcal Electronic energy + Delta-G solvation = -37463.167989 eV Core-core repulsion = 31771.023530 eV Total energy + Delta-G solvation = -5692.144458 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.105 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.29062 -48.83888 -48.73028 -43.78674 -42.63422 -40.67946 -39.75987 -38.11087 -37.57715 -36.63890 -34.61592 -33.83764 -33.10441 -29.98426 -29.30011 -28.55938 -27.65639 -26.15374 -25.47883 -24.30971 -22.66642 -22.41021 -20.91494 -20.75915 -20.22119 -19.57771 -19.51245 -19.03283 -18.78618 -18.03094 -17.99501 -17.67503 -17.49312 -17.22907 -16.72495 -16.44343 -16.09732 -16.01946 -15.71401 -15.60715 -15.56984 -15.20723 -15.18516 -14.97549 -14.91688 -14.86739 -14.72771 -14.45812 -14.26192 -14.21981 -14.13164 -13.99384 -13.87200 -13.79864 -13.52691 -13.21415 -12.96070 -12.86518 -12.82579 -12.34313 -12.18038 -11.85299 -11.81788 -11.63390 -11.12864 -10.91311 -10.67862 -10.36429 -9.60558 -5.09992 0.24753 0.79517 0.92598 1.07432 1.24463 1.36547 1.61950 1.68531 1.79084 1.87048 2.12909 2.23509 2.36174 2.45044 2.61873 2.91007 3.11855 3.19148 3.30671 3.33339 3.54927 3.72723 3.74316 3.97171 4.06175 4.08015 4.12876 4.14472 4.18842 4.22637 4.34910 4.42001 4.55577 4.56352 4.60885 4.65427 4.72616 5.04246 5.12337 5.17076 5.27972 5.86657 5.91569 6.27692 6.31622 6.60793 7.06852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.350 6.350 3 C 0.473 3.527 4 O -0.487 6.487 5 C 0.174 3.826 6 N -0.690 5.690 7 C 0.602 3.398 8 O -0.529 6.529 9 C -0.250 4.250 10 C 0.099 3.901 11 C -0.079 4.079 12 O -0.166 6.166 13 C -0.056 4.056 14 C -0.027 4.027 15 O -0.530 6.530 16 Si 0.702 3.298 17 C -0.144 4.144 18 C -0.100 4.100 19 C 0.067 3.933 20 O -0.500 6.500 21 C 0.439 3.561 22 F -0.169 7.169 23 F -0.180 7.180 24 F -0.171 7.171 25 C -0.145 4.145 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.412 0.588 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.133 0.867 34 H 0.384 0.616 35 H -0.253 1.253 36 H -0.246 1.246 37 H 0.158 0.842 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.393 0.607 41 H 0.114 0.886 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.163 -3.889 -0.012 4.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.266 6.266 3 C 0.313 3.687 4 O -0.372 6.372 5 C 0.085 3.915 6 N -0.344 5.344 7 C 0.391 3.609 8 O -0.406 6.406 9 C -0.255 4.255 10 C 0.046 3.954 11 C -0.135 4.135 12 O -0.063 6.063 13 C -0.104 4.104 14 C -0.138 4.138 15 O -0.336 6.336 16 Si 0.602 3.398 17 C -0.164 4.164 18 C -0.138 4.138 19 C 0.023 3.977 20 O -0.307 6.307 21 C 0.384 3.616 22 F -0.151 7.151 23 F -0.161 7.161 24 F -0.152 7.152 25 C -0.182 4.182 26 H 0.122 0.878 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.249 0.751 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.151 0.849 34 H 0.232 0.768 35 H -0.177 1.177 36 H -0.171 1.171 37 H 0.176 0.824 38 H 0.150 0.850 39 H 0.135 0.865 40 H 0.243 0.757 41 H 0.132 0.868 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.790 -4.149 1.222 4.396 hybrid contribution 0.182 0.055 -1.849 1.859 sum 0.972 -4.093 -0.627 4.254 Atomic orbital electron populations 1.23362 0.75648 1.04090 1.02901 1.86509 1.23869 1.32695 1.83486 1.23345 0.90764 0.81998 0.72633 1.90712 1.65964 1.36304 1.44233 1.20614 0.85683 0.90902 0.94349 1.45160 1.53238 1.29343 1.06685 1.17157 0.78314 0.84419 0.80960 1.90836 1.41801 1.38065 1.69920 1.20916 1.11540 0.99407 0.93620 1.22890 0.93238 0.85030 0.94289 1.20579 1.00703 0.96206 0.96024 1.83689 1.56507 1.30576 1.35562 1.22607 1.04468 0.99025 0.84341 1.24414 0.83405 0.92709 1.13223 1.86561 1.21021 1.70294 1.55741 0.94170 0.84186 0.82924 0.78510 1.22559 1.00457 0.93504 0.99847 1.23476 0.93878 0.95636 1.00792 1.23313 0.88508 0.89605 0.96304 1.86712 1.26130 1.79568 1.38310 1.20965 0.74712 0.86319 0.79625 1.93251 1.88721 1.60629 1.72463 1.93201 1.63948 1.92583 1.66365 1.93222 1.47890 1.91661 1.82425 1.24049 0.97953 1.01447 0.94800 0.87793 0.91574 0.91539 0.75126 0.90016 0.88140 0.88382 0.84942 0.76757 1.17739 1.17060 0.82397 0.84993 0.86497 0.75687 0.86804 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 101.05 1.07 1.07 16 2 O -0.35 -0.73 10.41 -39.25 -0.41 -1.14 16 3 C 0.47 1.33 6.59 36.00 0.24 1.57 16 4 O -0.49 -2.54 15.66 -18.75 -0.29 -2.84 16 5 C 0.17 0.05 1.00 -132.16 -0.13 -0.08 16 6 N -0.69 0.23 4.53 -49.00 -0.22 0.00 16 7 C 0.60 1.31 7.36 -12.54 -0.09 1.22 16 8 O -0.53 -2.56 14.20 5.27 0.07 -2.48 16 9 C -0.25 -0.31 6.31 -103.28 -0.65 -0.96 16 10 C 0.10 0.09 7.37 -34.97 -0.26 -0.16 16 11 C -0.08 0.05 9.14 36.00 0.33 0.38 16 12 O -0.17 -0.07 8.90 7.63 0.07 0.00 16 13 C -0.06 0.02 6.18 -35.74 -0.22 -0.20 16 14 C -0.03 0.05 2.97 36.00 0.11 0.15 16 15 O -0.53 0.87 12.88 -35.23 -0.45 0.42 16 16 Si 0.70 -1.23 32.09 -169.99 -5.46 -6.68 16 17 C -0.14 0.05 10.49 -37.45 -0.39 -0.34 16 18 C -0.10 -0.09 5.98 -25.92 -0.15 -0.24 16 19 C 0.07 -0.09 1.36 -89.81 -0.12 -0.21 16 20 O -0.50 1.14 12.91 -35.23 -0.45 0.69 16 21 C 0.44 -0.02 2.85 37.16 0.11 0.08 16 22 F -0.17 -0.31 17.18 2.25 0.04 -0.27 16 23 F -0.18 0.07 16.65 2.25 0.04 0.11 16 24 F -0.17 -0.13 15.75 2.25 0.04 -0.10 16 25 C -0.14 0.37 6.63 -25.92 -0.17 0.20 16 26 H 0.10 -0.25 8.14 -51.93 -0.42 -0.67 16 27 H 0.07 0.05 8.13 -51.93 -0.42 -0.37 16 28 H 0.07 -0.03 8.13 -51.93 -0.42 -0.45 16 29 H 0.41 -1.14 7.85 -40.82 -0.32 -1.46 16 30 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 31 H 0.10 -0.06 8.09 -51.92 -0.42 -0.48 16 32 H 0.10 -0.02 8.07 -51.93 -0.42 -0.44 16 33 H 0.13 -0.29 7.96 -51.93 -0.41 -0.70 16 34 H 0.38 -1.99 8.70 45.56 0.40 -1.59 16 35 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 36 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 37 H 0.16 -0.39 7.75 -52.49 -0.41 -0.80 16 38 H 0.13 0.17 7.09 -51.93 -0.37 -0.20 16 39 H 0.12 0.27 7.19 -51.93 -0.37 -0.11 16 40 H 0.39 -2.24 8.43 45.56 0.38 -1.85 16 41 H 0.11 -0.59 8.09 -51.93 -0.42 -1.01 16 42 H 0.13 -0.35 7.09 -51.93 -0.37 -0.71 16 LS Contribution 379.04 15.07 5.71 5.71 Total: 0.00 -9.99 379.04 -5.29 -15.28 By element: Atomic # 1 Polarization: -7.57 SS G_CDS: -3.62 Total: -11.18 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -0.35 Total: 2.48 kcal Atomic # 7 Polarization: 0.23 SS G_CDS: -0.22 Total: 0.00 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -1.47 Total: -5.35 kcal Atomic # 9 Polarization: -0.37 SS G_CDS: 0.11 Total: -0.26 kcal Atomic # 14 Polarization: -1.23 SS G_CDS: -5.46 Total: -6.68 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -9.99 -5.29 -15.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18364788_13308374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -270.649 kcal (2) G-P(sol) polarization free energy of solvation -9.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -280.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -285.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds