Wall clock time and date at job start Tue Mar 9 2021 14:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00059 * 2 1 4 4 O 1.20826 * 120.00005 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00404 * 179.97438 * 3 2 1 6 6 N 1.46497 * 112.84996 * 324.47046 * 5 3 2 7 7 C 1.34788 * 119.99938 * 294.08592 * 6 5 3 8 8 O 1.21609 * 119.99508 * 355.00009 * 7 6 5 9 9 C 1.47375 * 120.00349 * 175.00049 * 7 6 5 10 10 C 1.36406 * 127.19283 * 180.02562 * 9 7 6 11 11 C 1.50693 * 125.80383 * 359.96124 * 10 9 7 12 12 O 1.33661 * 108.39837 * 179.69879 * 10 9 7 13 13 C 1.34214 * 110.90550 * 0.25865 * 12 10 9 14 14 C 1.50696 * 125.43559 * 179.97438 * 13 12 10 15 15 O 1.42905 * 109.47228 * 245.02775 * 14 13 12 16 16 Si 1.86299 * 109.47366 * 5.03269 * 14 13 12 17 17 C 1.34180 * 109.12565 * 0.02562 * 13 12 10 18 18 C 1.53775 * 113.61998 * 193.26983 * 5 3 2 19 19 C 1.53781 * 87.08370 * 219.93544 * 18 5 3 20 20 O 1.42902 * 113.61458 * 270.88093 * 19 18 5 21 21 C 1.53001 * 113.61427 * 139.98072 * 19 18 5 22 22 F 1.39900 * 109.47375 * 59.99639 * 21 19 18 23 23 F 1.39897 * 109.47147 * 180.02562 * 21 19 18 24 24 F 1.39902 * 109.47051 * 299.99715 * 21 19 18 25 25 C 1.53780 * 87.08085 * 25.43100 * 19 18 5 26 26 H 1.08996 * 109.47322 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47373 * 300.00624 * 1 2 3 28 28 H 1.09002 * 109.46962 * 60.00623 * 1 2 3 29 29 H 0.97000 * 120.00526 * 114.08813 * 6 5 3 30 30 H 1.09005 * 109.47867 * 179.72188 * 11 10 9 31 31 H 1.09008 * 109.47100 * 299.71690 * 11 10 9 32 32 H 1.08995 * 109.47565 * 59.71540 * 11 10 9 33 33 H 1.09006 * 109.47174 * 125.03004 * 14 13 12 34 34 H 0.96701 * 113.99951 * 60.00429 * 15 14 13 35 35 H 1.48499 * 110.00323 * 58.67507 * 16 14 13 36 36 H 1.48495 * 110.00065 * 180.02562 * 16 14 13 37 37 H 1.07993 * 127.02271 * 180.02562 * 17 13 12 38 38 H 1.08999 * 113.61464 * 334.48745 * 18 5 3 39 39 H 1.08998 * 113.61837 * 105.29880 * 18 5 3 40 40 H 0.96701 * 113.99612 * 180.02562 * 20 19 18 41 41 H 1.08999 * 113.61489 * 220.01586 * 25 19 18 42 42 H 1.08997 * 113.61288 * 89.11724 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 7 4.1916 0.2077 0.7856 7 6 4.0159 0.1621 2.1212 8 8 3.4152 1.0558 2.6862 9 6 4.5518 -0.9707 2.8967 10 6 4.4596 -1.1650 4.2437 11 6 3.7800 -0.2429 5.2228 12 8 5.0694 -2.3151 4.5468 13 6 5.5724 -2.8951 3.4459 14 6 6.3242 -4.2007 3.4121 15 8 7.6722 -3.9637 3.0014 16 14 6.3178 -4.9653 5.1109 17 6 5.3000 -2.1264 2.3804 18 6 4.1095 2.6767 0.3239 19 6 5.1720 2.4291 -0.7599 20 8 6.3575 1.8018 -0.2667 21 6 5.4637 3.6574 -1.6242 22 9 5.9290 4.6983 -0.8135 23 9 6.4368 3.3369 -2.5769 24 9 4.2914 4.0601 -2.2731 25 6 4.1765 1.4474 -1.4004 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 4.7321 -0.4660 0.3442 30 1 3.8604 -0.6570 6.2280 31 1 4.2598 0.7355 5.1936 32 1 2.7284 -0.1399 4.9553 33 1 5.8434 -4.8787 2.7068 34 1 8.1619 -3.3675 3.5844 35 1 4.9207 -5.1874 5.5627 36 1 7.0566 -6.2532 5.0911 37 1 5.5703 -2.3197 1.3529 38 1 3.4157 3.4810 0.0795 39 1 4.5215 2.7642 1.3292 40 1 7.0296 1.6438 -0.9438 41 1 4.6439 0.5421 -1.7877 42 1 3.5009 1.9157 -2.1163 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18364788_13308374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:19:09 Heat of formation + Delta-G solvation = -289.330645 kcal Electronic energy + Delta-G solvation = -37463.315355 eV Core-core repulsion = 31771.023530 eV Total energy + Delta-G solvation = -5692.291825 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.105 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -51.31036 -48.84005 -48.78789 -43.77412 -42.69134 -40.80133 -39.82866 -37.95744 -37.73894 -36.60435 -34.66490 -33.81742 -33.05336 -29.99486 -29.25743 -28.56329 -27.58927 -26.14402 -25.48593 -24.33224 -22.70168 -22.37969 -20.93231 -20.78977 -20.22052 -19.59842 -19.52272 -18.99103 -18.85357 -18.11085 -17.97148 -17.65839 -17.53219 -17.25919 -16.71965 -16.38080 -16.09815 -16.00232 -15.68355 -15.63258 -15.60846 -15.21656 -15.19551 -15.00078 -14.95422 -14.90133 -14.74077 -14.50646 -14.25086 -14.23447 -14.13094 -13.93682 -13.84185 -13.69908 -13.60001 -13.23397 -12.87636 -12.76717 -12.73836 -12.40373 -12.24068 -11.95715 -11.89130 -11.57464 -11.26885 -10.92682 -10.58480 -10.43454 -9.59137 -4.98279 0.19525 0.76159 0.83995 1.19586 1.24154 1.39659 1.59057 1.71821 1.81781 1.93252 2.14322 2.24644 2.45423 2.47471 2.65545 2.92530 3.20637 3.23708 3.34699 3.47516 3.52797 3.74296 3.79608 4.07278 4.11241 4.16302 4.20667 4.20899 4.30143 4.34509 4.43924 4.50093 4.57787 4.58739 4.59522 4.64910 4.77743 5.06273 5.14413 5.15210 5.22163 5.89092 6.28813 6.30595 6.44774 6.65362 7.00317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.469 3.531 4 O -0.520 6.520 5 C 0.170 3.830 6 N -0.674 5.674 7 C 0.598 3.402 8 O -0.564 6.564 9 C -0.265 4.265 10 C 0.088 3.912 11 C -0.077 4.077 12 O -0.170 6.170 13 C -0.061 4.061 14 C -0.020 4.020 15 O -0.539 6.539 16 Si 0.770 3.230 17 C -0.141 4.141 18 C -0.110 4.110 19 C 0.083 3.917 20 O -0.504 6.504 21 C 0.438 3.562 22 F -0.183 7.183 23 F -0.175 7.175 24 F -0.177 7.177 25 C -0.130 4.130 26 H 0.130 0.870 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.425 0.575 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.142 0.858 34 H 0.400 0.600 35 H -0.296 1.296 36 H -0.280 1.280 37 H 0.181 0.819 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.409 0.591 41 H 0.150 0.850 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.328 -5.138 -1.176 6.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.311 3.689 4 O -0.407 6.407 5 C 0.080 3.920 6 N -0.329 5.329 7 C 0.388 3.612 8 O -0.444 6.444 9 C -0.269 4.269 10 C 0.035 3.965 11 C -0.133 4.133 12 O -0.067 6.067 13 C -0.109 4.109 14 C -0.131 4.131 15 O -0.347 6.347 16 Si 0.675 3.325 17 C -0.160 4.160 18 C -0.148 4.148 19 C 0.039 3.961 20 O -0.314 6.314 21 C 0.383 3.617 22 F -0.165 7.165 23 F -0.156 7.156 24 F -0.158 7.158 25 C -0.167 4.167 26 H 0.149 0.851 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.265 0.735 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.159 0.841 34 H 0.250 0.750 35 H -0.223 1.223 36 H -0.206 1.206 37 H 0.198 0.802 38 H 0.139 0.861 39 H 0.116 0.884 40 H 0.263 0.737 41 H 0.168 0.832 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.007 -5.411 0.027 5.772 hybrid contribution -0.197 0.408 -1.446 1.515 sum 1.811 -5.003 -1.419 5.507 Atomic orbital electron populations 1.23570 0.74745 1.05750 1.02553 1.86505 1.24897 1.32334 1.83133 1.23864 0.91744 0.81714 0.71589 1.90691 1.66886 1.37285 1.45869 1.20671 0.84395 0.90618 0.96311 1.45011 1.52657 1.29318 1.05923 1.17387 0.77908 0.84253 0.81662 1.90820 1.43444 1.39354 1.70741 1.21004 1.12234 0.99763 0.93901 1.23153 0.93376 0.85313 0.94694 1.20574 0.99963 0.95973 0.96825 1.83689 1.56513 1.30422 1.36052 1.22909 1.04416 0.99382 0.84171 1.24410 0.83566 0.92063 1.13040 1.86535 1.20843 1.70840 1.56478 0.93297 0.80552 0.81062 0.77561 1.22799 0.99769 0.92534 1.00919 1.23426 0.94845 0.95948 1.00572 1.23043 0.88721 0.89344 0.95009 1.86694 1.26261 1.79143 1.39307 1.21167 0.74509 0.86345 0.79684 1.93222 1.88891 1.61459 1.72910 1.93208 1.63733 1.92476 1.66200 1.93210 1.48264 1.91790 1.82556 1.24100 0.97087 1.02479 0.93045 0.85138 0.92762 0.91113 0.73464 0.88199 0.88533 0.89227 0.84146 0.74966 1.22333 1.20639 0.80167 0.86105 0.88408 0.73697 0.83205 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.01 10.56 113.37 1.20 1.21 16 2 O -0.35 -1.56 10.41 -51.39 -0.54 -2.10 16 3 C 0.47 3.07 6.59 71.23 0.47 3.54 16 4 O -0.52 -6.38 15.66 21.96 0.34 -6.04 16 5 C 0.17 0.13 1.00 3.38 0.00 0.13 16 6 N -0.67 0.70 4.53 -427.20 -1.93 -1.24 16 7 C 0.60 2.97 7.36 86.65 0.64 3.61 16 8 O -0.56 -6.50 14.20 -4.06 -0.06 -6.56 16 9 C -0.26 -0.67 6.31 -18.99 -0.12 -0.79 16 10 C 0.09 0.20 7.37 25.26 0.19 0.39 16 11 C -0.08 0.02 9.14 71.23 0.65 0.67 16 12 O -0.17 -0.11 8.90 4.40 0.04 -0.08 16 13 C -0.06 0.10 6.18 24.76 0.15 0.26 16 14 C -0.02 0.09 2.97 71.23 0.21 0.30 16 15 O -0.54 2.71 12.88 -148.98 -1.92 0.79 16 16 Si 0.77 -2.71 32.09 68.60 2.20 -0.51 16 17 C -0.14 0.28 10.49 23.65 0.25 0.53 16 18 C -0.11 -0.32 5.98 31.12 0.19 -0.14 16 19 C 0.08 -0.26 1.36 -10.27 -0.01 -0.27 16 20 O -0.50 2.91 12.91 -148.98 -1.92 0.99 16 21 C 0.44 -0.09 2.85 71.98 0.21 0.12 16 22 F -0.18 -0.79 17.18 44.97 0.77 -0.02 16 23 F -0.17 0.31 16.65 44.97 0.75 1.06 16 24 F -0.18 -0.33 15.75 44.97 0.71 0.38 16 25 C -0.13 0.83 6.63 31.12 0.21 1.03 16 26 H 0.13 -0.70 8.14 -2.39 -0.02 -0.72 16 27 H 0.05 0.16 8.13 -2.39 -0.02 0.14 16 28 H 0.07 -0.03 8.13 -2.39 -0.02 -0.05 16 29 H 0.43 -3.07 7.85 -92.71 -0.73 -3.79 16 30 H 0.10 -0.45 8.14 -2.38 -0.02 -0.47 16 31 H 0.10 0.04 8.09 -2.38 -0.02 0.02 16 32 H 0.09 0.13 8.07 -2.39 -0.02 0.11 16 33 H 0.14 -0.84 7.96 -2.38 -0.02 -0.86 16 34 H 0.40 -4.84 8.70 -74.06 -0.64 -5.48 16 35 H -0.30 -1.10 7.11 99.48 0.71 -0.40 16 36 H -0.28 -0.57 7.11 99.48 0.71 0.13 16 37 H 0.18 -1.33 7.75 -2.91 -0.02 -1.35 16 38 H 0.12 0.59 7.09 -2.39 -0.02 0.57 16 39 H 0.10 0.66 7.19 -2.39 -0.02 0.65 16 40 H 0.41 -5.50 8.43 -74.06 -0.62 -6.12 16 41 H 0.15 -2.04 8.09 -2.39 -0.02 -2.06 16 42 H 0.13 -0.84 7.09 -2.39 -0.02 -0.86 16 Total: 0.00 -25.11 379.04 1.86 -23.25 By element: Atomic # 1 Polarization: -19.73 SS G_CDS: -0.81 Total: -20.54 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 4.22 Total: 10.59 kcal Atomic # 7 Polarization: 0.70 SS G_CDS: -1.93 Total: -1.24 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -4.05 Total: -12.98 kcal Atomic # 9 Polarization: -0.80 SS G_CDS: 2.23 Total: 1.43 kcal Atomic # 14 Polarization: -2.71 SS G_CDS: 2.20 Total: -0.51 kcal Total: -25.11 1.86 -23.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18364788_13308374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -266.081 kcal (2) G-P(sol) polarization free energy of solvation -25.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -291.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -289.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds