Wall clock time and date at job start Tue Mar 9 2021 14:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 116.99844 * 2 1 4 4 O 1.20819 * 120.00321 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99688 * 179.97438 * 3 2 1 6 6 N 1.46501 * 112.90887 * 24.38177 * 5 3 2 7 7 C 1.34774 * 120.00244 * 65.94993 * 6 5 3 8 8 O 1.21635 * 119.99753 * 5.02000 * 7 6 5 9 9 C 1.47262 * 120.00430 * 185.01885 * 7 6 5 10 10 C 1.36329 * 126.97048 * 179.70889 * 9 7 6 11 11 C 1.51004 * 126.79485 * 0.07819 * 10 9 7 12 12 C 1.53390 * 108.24983 * 164.28254 * 11 10 9 13 13 C 1.53156 * 109.03936 * 48.48657 * 12 11 10 14 14 C 1.53351 * 109.33171 * 290.21396 * 13 12 11 15 15 N 1.35218 * 108.66272 * 179.97438 * 10 9 7 16 16 C 1.36425 * 109.89600 * 0.35333 * 15 10 9 17 17 C 1.50700 * 125.49018 * 179.81711 * 16 15 10 18 18 O 1.42895 * 109.46973 * 29.99462 * 17 16 15 19 19 Si 1.86308 * 109.46566 * 149.98690 * 17 16 15 20 20 C 1.34493 * 109.01263 * 359.79036 * 16 15 10 21 21 C 1.53950 * 113.66893 * 253.19274 * 5 3 2 22 22 C 1.53784 * 87.02253 * 220.06656 * 21 5 3 23 23 O 1.42898 * 113.61342 * 270.77054 * 22 21 5 24 24 C 1.52998 * 113.61801 * 139.94791 * 22 21 5 25 25 F 1.39893 * 109.47331 * 200.86801 * 24 22 21 26 26 F 1.39903 * 109.47083 * 80.86185 * 24 22 21 27 27 F 1.39909 * 109.47035 * 320.87044 * 24 22 21 28 28 C 1.53784 * 113.61569 * 155.63064 * 5 3 2 29 29 H 1.08998 * 109.47458 * 300.00912 * 1 2 3 30 30 H 1.09009 * 109.46589 * 60.00441 * 1 2 3 31 31 H 1.09001 * 109.47246 * 180.02562 * 1 2 3 32 32 H 0.96999 * 120.00171 * 245.95461 * 6 5 3 33 33 H 1.09001 * 109.70780 * 283.97996 * 11 10 9 34 34 H 1.09002 * 109.70195 * 44.55004 * 11 10 9 35 35 H 1.09003 * 109.54084 * 168.34980 * 12 11 10 36 36 H 1.08992 * 109.54230 * 288.52853 * 12 11 10 37 37 H 1.09006 * 109.46428 * 50.44064 * 13 12 11 38 38 H 1.09002 * 109.46023 * 170.41284 * 13 12 11 39 39 H 1.09006 * 110.08246 * 291.23708 * 14 13 12 40 40 H 1.08998 * 109.13024 * 170.85207 * 14 13 12 41 41 H 1.08996 * 109.47365 * 269.98242 * 17 16 15 42 42 H 0.96701 * 113.99694 * 179.97438 * 18 17 16 43 43 H 1.48495 * 110.00219 * 300.00179 * 19 17 16 44 44 H 1.48503 * 109.99713 * 61.32445 * 19 17 16 45 45 H 1.08000 * 126.81855 * 179.97438 * 20 16 15 46 46 H 1.08999 * 113.67105 * 105.53920 * 21 5 3 47 47 H 1.08996 * 113.61345 * 334.58455 * 21 5 3 48 48 H 0.96701 * 113.99808 * 279.13170 * 23 22 21 49 49 H 1.08994 * 113.60980 * 25.43507 * 28 5 3 50 50 H 1.08996 * 113.61458 * 254.53423 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.2003 0.0771 -0.5560 7 6 4.0406 -0.2260 -1.8595 8 8 3.4475 0.5409 -2.5939 9 6 4.5843 -1.4857 -2.3946 10 6 4.5010 -1.9344 -3.6792 11 6 3.8328 -1.2363 -4.8395 12 6 4.3167 -1.8932 -6.1385 13 6 4.1988 -3.4142 -6.0032 14 6 5.2419 -3.9169 -4.9978 15 7 5.1260 -3.1307 -3.7610 16 6 5.6167 -3.4828 -2.5377 17 6 6.3714 -4.7503 -2.2295 18 8 7.0912 -5.1702 -3.3902 19 14 7.5680 -4.4372 -0.8362 20 6 5.3188 -2.5161 -1.6513 21 6 4.1616 1.7146 1.3505 22 6 5.1636 2.5567 0.5432 23 8 6.3552 1.8494 0.1941 24 6 5.4457 3.9293 1.1574 25 9 5.9545 4.7845 0.1742 26 9 6.3815 3.7952 2.1888 27 9 4.2589 4.4631 1.6712 28 6 4.1146 2.5887 -0.5809 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 4.7350 -0.4978 0.0136 33 1 2.7508 -1.3389 -4.7565 34 1 4.1030 -0.1803 -4.8380 35 1 3.7010 -1.5523 -6.9708 36 1 5.3567 -1.6215 -6.3190 37 1 3.1983 -3.6714 -5.6551 38 1 4.3768 -3.8799 -6.9726 39 1 6.2445 -3.8038 -5.4105 40 1 5.0513 -4.9679 -4.7808 41 1 5.6681 -5.5297 -1.9361 42 1 7.6015 -5.9819 -3.2642 43 1 8.5322 -3.3763 -1.2235 44 1 6.8291 -4.0304 0.3861 45 1 5.5701 -2.5011 -0.6011 46 1 4.6252 0.9020 1.9099 47 1 3.4784 2.3104 1.9556 48 1 7.0093 1.8059 0.9050 49 1 3.4184 3.4239 -0.5047 50 1 4.5401 2.4806 -1.5785 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18364788_16915396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:19:57 Heat of formation + Delta-G solvation = -265.113558 kcal Electronic energy + Delta-G solvation = -44125.877486 eV Core-core repulsion = 38093.053076 eV Total energy + Delta-G solvation = -6032.824410 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.148 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -51.34780 -48.87275 -48.82735 -42.96082 -42.57110 -40.77162 -39.70494 -37.83651 -37.74643 -36.90050 -36.60410 -34.31151 -33.54370 -31.29920 -30.18136 -29.20581 -28.55859 -27.65142 -26.66702 -25.68919 -24.59201 -24.19705 -22.59658 -21.70616 -21.61057 -20.77988 -20.27278 -19.81562 -19.60424 -19.49515 -18.86602 -18.52141 -18.18570 -18.09230 -17.54313 -17.31603 -16.88305 -16.60435 -16.41704 -15.96760 -15.80878 -15.75317 -15.66576 -15.51523 -15.33858 -15.25515 -15.15241 -15.09189 -15.00964 -14.98253 -14.94012 -14.67580 -14.49729 -14.46994 -14.31934 -14.13234 -13.84891 -13.74082 -13.64340 -13.25089 -13.21656 -12.84012 -12.80907 -12.52783 -12.42344 -12.11878 -12.03656 -11.95718 -11.90835 -11.85107 -11.80495 -11.62330 -11.07794 -10.53735 -10.42945 -9.70856 -9.11800 -4.90613 0.56670 0.76551 0.99120 1.21819 1.39459 1.57527 1.66164 1.74374 2.01719 2.12741 2.17881 2.31642 2.42089 2.46756 2.61360 2.93171 3.17564 3.20652 3.30529 3.47546 3.55019 3.57045 3.72440 3.75825 3.83177 3.99532 4.06157 4.14973 4.17026 4.19782 4.22752 4.29345 4.33157 4.34981 4.40018 4.48026 4.51025 4.52582 4.57495 4.67772 4.72601 4.77700 4.91746 4.94378 5.06628 5.13101 5.14459 5.17580 5.58216 5.95288 6.13530 6.23129 6.38358 6.44445 6.87107 7.11713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.473 3.527 4 O -0.521 6.521 5 C 0.169 3.831 6 N -0.681 5.681 7 C 0.602 3.398 8 O -0.574 6.574 9 C -0.252 4.252 10 C 0.106 3.894 11 C -0.053 4.053 12 C -0.125 4.125 13 C -0.134 4.134 14 C 0.112 3.888 15 N -0.423 5.423 16 C 0.027 3.973 17 C -0.054 4.054 18 O -0.565 6.565 19 Si 0.802 3.198 20 C -0.186 4.186 21 C -0.128 4.128 22 C 0.082 3.918 23 O -0.507 6.507 24 C 0.439 3.561 25 F -0.183 7.183 26 F -0.174 7.174 27 F -0.175 7.175 28 C -0.109 4.109 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.129 0.871 32 H 0.421 0.579 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.409 0.591 43 H -0.311 1.311 44 H -0.275 1.275 45 H 0.160 0.840 46 H 0.148 0.852 47 H 0.133 0.867 48 H 0.409 0.591 49 H 0.122 0.878 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.550 -12.037 2.175 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.314 3.686 4 O -0.409 6.409 5 C 0.079 3.921 6 N -0.335 5.335 7 C 0.394 3.606 8 O -0.455 6.455 9 C -0.262 4.262 10 C -0.013 4.013 11 C -0.091 4.091 12 C -0.162 4.162 13 C -0.172 4.172 14 C -0.007 4.007 15 N -0.099 5.099 16 C -0.083 4.083 17 C -0.162 4.162 18 O -0.375 6.375 19 Si 0.706 3.294 20 C -0.210 4.210 21 C -0.165 4.165 22 C 0.038 3.962 23 O -0.317 6.317 24 C 0.384 3.616 25 F -0.165 7.165 26 F -0.156 7.156 27 F -0.156 7.156 28 C -0.148 4.148 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.147 0.853 32 H 0.260 0.740 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.129 0.871 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.261 0.739 43 H -0.239 1.239 44 H -0.201 1.201 45 H 0.177 0.823 46 H 0.166 0.834 47 H 0.151 0.849 48 H 0.262 0.738 49 H 0.140 0.860 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.696 -10.442 1.147 10.845 hybrid contribution -0.248 0.885 0.472 1.034 sum 2.448 -9.556 1.619 9.997 Atomic orbital electron populations 1.23564 0.74736 1.05681 1.02559 1.86521 1.24926 1.32415 1.83004 1.23801 0.91636 0.81707 0.71413 1.90680 1.66791 1.37140 1.46308 1.20713 0.84561 0.88114 0.98758 1.45021 1.53178 1.25252 1.10021 1.17456 0.77454 0.84493 0.81227 1.90763 1.44403 1.51629 1.58672 1.19750 1.14192 0.97899 0.94336 1.20599 0.97694 0.87223 0.95745 1.20460 0.99541 0.99007 0.90111 1.21706 1.02325 0.95310 0.96896 1.22003 0.98907 0.95906 1.00370 1.22286 1.01146 0.95903 0.81413 1.44108 1.40825 1.15616 1.09304 1.20311 1.03802 0.99044 0.85111 1.24614 1.00167 0.93500 0.97965 1.86379 1.66744 1.49460 1.34934 0.94540 0.76495 0.85450 0.72953 1.21801 1.05870 0.93895 0.99416 1.24122 0.97146 1.01695 0.93563 1.23054 0.88520 0.86688 0.97956 1.86715 1.27028 1.73872 1.44064 1.21117 0.74503 0.89252 0.76691 1.93217 1.87449 1.73492 1.62321 1.93208 1.66157 1.95936 1.60272 1.93216 1.46984 1.87958 1.87487 1.23430 0.95105 0.96780 0.99451 0.90960 0.92779 0.85279 0.74040 0.89931 0.90170 0.89027 0.91638 0.90973 0.87077 0.89252 0.87692 0.88178 0.73877 1.23899 1.20104 0.82285 0.83414 0.84859 0.73804 0.85952 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.08 10.56 113.37 1.20 1.28 16 2 O -0.35 -2.80 10.23 -51.39 -0.53 -3.33 16 3 C 0.47 4.53 6.59 71.24 0.47 5.00 16 4 O -0.52 -7.43 15.80 21.99 0.35 -7.08 16 5 C 0.17 0.77 1.01 3.44 0.00 0.77 16 6 N -0.68 -2.84 4.42 -427.03 -1.89 -4.73 16 7 C 0.60 6.47 7.32 86.62 0.63 7.11 16 8 O -0.57 -9.67 13.88 -4.14 -0.06 -9.73 16 9 C -0.25 -2.34 6.28 -19.12 -0.12 -2.46 16 10 C 0.11 0.88 6.57 41.69 0.27 1.15 16 11 C -0.05 -0.33 5.33 30.07 0.16 -0.17 16 12 C -0.12 -0.01 5.97 30.78 0.18 0.17 16 13 C -0.13 0.41 5.94 30.76 0.18 0.59 16 14 C 0.11 -0.12 5.32 86.40 0.46 0.34 16 15 N -0.42 -1.95 3.11 -493.21 -1.53 -3.49 16 16 C 0.03 0.09 6.18 40.99 0.25 0.35 16 17 C -0.05 0.24 2.98 71.24 0.21 0.45 16 18 O -0.56 3.40 10.65 -148.98 -1.59 1.81 16 19 Si 0.80 -4.68 31.22 68.60 2.14 -2.54 16 20 C -0.19 -0.90 9.09 23.64 0.21 -0.69 16 21 C -0.13 0.39 6.64 31.18 0.21 0.59 16 22 C 0.08 0.03 1.33 -10.27 -0.01 0.01 16 23 O -0.51 0.78 12.91 -148.98 -1.92 -1.15 16 24 C 0.44 1.07 2.83 71.98 0.20 1.28 16 25 F -0.18 -1.25 17.20 44.97 0.77 -0.48 16 26 F -0.17 -0.10 16.72 44.97 0.75 0.66 16 27 F -0.18 -0.74 15.74 44.97 0.71 -0.03 16 28 C -0.11 -0.71 6.05 31.12 0.19 -0.53 16 29 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 30 H 0.05 0.28 8.13 -2.38 -0.02 0.26 16 31 H 0.13 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H 0.42 -0.54 7.80 -92.71 -0.72 -1.27 16 33 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 0.80 7.39 -2.39 -0.02 0.78 16 35 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 36 H 0.06 0.07 8.12 -2.39 -0.02 0.05 16 37 H 0.07 -0.15 8.11 -2.38 -0.02 -0.17 16 38 H 0.11 -0.80 8.14 -2.39 -0.02 -0.82 16 39 H 0.09 -0.07 8.00 -2.38 -0.02 -0.09 16 40 H 0.10 -0.37 7.69 -2.39 -0.02 -0.39 16 41 H 0.10 -0.86 7.96 -2.39 -0.02 -0.88 16 42 H 0.41 -6.68 8.74 -74.06 -0.65 -7.33 16 43 H -0.31 -1.29 7.11 99.48 0.71 -0.59 16 44 H -0.27 0.69 6.88 99.48 0.68 1.37 16 45 H 0.16 0.06 6.38 -2.91 -0.02 0.04 16 46 H 0.15 -1.50 8.09 -2.39 -0.02 -1.52 16 47 H 0.13 -0.45 7.13 -2.39 -0.02 -0.47 16 48 H 0.41 -3.97 8.50 -74.06 -0.63 -4.60 16 49 H 0.12 0.95 7.07 -2.39 -0.02 0.94 16 50 H 0.09 1.04 7.20 -2.39 -0.02 1.02 16 Total: 0.00 -29.49 418.90 0.99 -28.50 By element: Atomic # 1 Polarization: -12.75 SS G_CDS: -0.93 Total: -13.67 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 4.71 Total: 15.25 kcal Atomic # 7 Polarization: -4.79 SS G_CDS: -3.42 Total: -8.21 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -3.75 Total: -19.47 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 2.23 Total: 0.15 kcal Atomic # 14 Polarization: -4.68 SS G_CDS: 2.14 Total: -2.54 kcal Total: -29.49 0.99 -28.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18364788_16915396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -236.618 kcal (2) G-P(sol) polarization free energy of solvation -29.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -266.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -265.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds