Wall clock time and date at job start Tue Mar 9 2021 14:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34231 * 116.99942 * 2 1 4 4 O 1.20829 * 120.00362 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00202 * 180.02562 * 3 2 1 6 6 N 1.46506 * 112.84636 * 334.66912 * 5 3 2 7 7 C 1.34768 * 119.99939 * 50.32854 * 6 5 3 8 8 O 1.21281 * 120.00738 * 0.02562 * 7 6 5 9 9 C 1.50711 * 119.99878 * 179.97438 * 7 6 5 10 10 O 1.42899 * 109.47088 * 180.02562 * 9 7 6 11 11 C 1.35896 * 116.99771 * 180.02562 * 10 9 7 12 12 C 1.38738 * 120.05755 * 359.72668 * 11 10 9 13 13 C 1.38147 * 119.94080 * 179.74527 * 12 11 10 14 14 C 1.38265 * 120.05682 * 0.50758 * 13 12 11 15 15 C 1.50700 * 119.94305 * 179.74672 * 14 13 12 16 16 O 1.42893 * 109.47392 * 120.01828 * 15 14 13 17 17 Si 1.86309 * 109.46892 * 0.02562 * 15 14 13 18 18 C 1.38262 * 120.11284 * 359.76459 * 14 13 12 19 19 C 1.38143 * 120.05580 * 359.97438 * 18 14 13 20 20 C 1.53780 * 113.61555 * 203.47446 * 5 3 2 21 21 C 1.53778 * 87.07870 * 220.01726 * 20 5 3 22 22 O 1.42905 * 113.61626 * 270.80087 * 21 20 5 23 23 C 1.52999 * 113.61906 * 139.98045 * 21 20 5 24 24 F 1.39899 * 109.47039 * 59.99345 * 23 21 20 25 25 F 1.39900 * 109.47743 * 179.97438 * 23 21 20 26 26 F 1.39908 * 109.46821 * 300.00095 * 23 21 20 27 27 C 1.53781 * 113.61527 * 105.86269 * 5 3 2 28 28 H 1.09012 * 109.47222 * 59.99894 * 1 2 3 29 29 H 1.08995 * 109.47381 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47150 * 300.00288 * 1 2 3 31 31 H 0.96995 * 119.99759 * 230.33611 * 6 5 3 32 32 H 1.08993 * 109.47134 * 300.00428 * 9 7 6 33 33 H 1.09002 * 109.46461 * 60.00279 * 9 7 6 34 34 H 1.07997 * 120.02590 * 359.97438 * 12 11 10 35 35 H 1.07999 * 119.96526 * 180.22512 * 13 12 11 36 36 H 1.08998 * 109.47325 * 240.02267 * 15 14 13 37 37 H 0.96701 * 114.00188 * 299.99799 * 16 15 14 38 38 H 1.48495 * 109.99784 * 58.68463 * 17 15 14 39 39 H 1.48498 * 109.99704 * 179.97438 * 17 15 14 40 40 H 1.07998 * 119.97295 * 179.97438 * 18 14 13 41 41 H 1.08005 * 120.02967 * 180.02562 * 19 18 14 42 42 H 1.09000 * 113.61461 * 334.56184 * 20 5 3 43 43 H 1.09000 * 113.61692 * 105.38457 * 20 5 3 44 44 H 0.96695 * 114.00539 * 180.02562 * 22 21 20 45 45 H 1.09005 * 113.61233 * 254.53070 * 27 5 3 46 46 H 1.08999 * 113.61553 * 25.43259 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 4.1985 0.0860 0.5766 7 6 3.8371 -1.1416 0.1539 8 8 2.9890 -1.2623 -0.7045 9 6 4.4879 -2.3647 0.7472 10 8 3.9410 -3.5371 0.1402 11 6 4.4229 -4.7342 0.5660 12 6 5.4061 -4.7795 1.5438 13 6 5.8906 -5.9980 1.9787 14 6 5.4039 -7.1714 1.4328 15 6 5.9383 -8.4990 1.9050 16 8 4.8696 -9.2767 2.4480 17 14 7.2302 -8.2171 3.2175 18 6 4.4281 -7.1288 0.4542 19 6 3.9365 -5.9131 0.0197 20 6 4.1140 2.5977 0.5607 21 6 5.1639 2.5482 -0.5618 22 8 6.3553 1.8466 -0.2008 23 6 5.4465 3.9110 -1.1973 24 9 5.9216 4.7919 -0.2198 25 9 6.4094 3.7665 -2.2019 26 9 4.2672 4.4209 -1.7509 27 6 4.1608 1.6921 -1.3561 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.8770 0.1824 1.2629 32 1 5.5620 -2.3291 0.5654 33 1 4.3018 -2.3904 1.8209 34 1 5.7898 -3.8630 1.9673 35 1 6.6533 -6.0338 2.7424 36 1 6.3841 -9.0309 1.0645 37 1 4.4258 -8.8636 3.2013 38 1 6.6427 -7.4649 4.3550 39 1 7.7646 -9.5188 3.6919 40 1 4.0499 -8.0467 0.0291 41 1 3.1740 -5.8803 -0.7444 42 1 3.4179 3.4317 0.4710 43 1 4.5375 2.5056 1.5609 44 1 7.0197 1.8123 -0.9026 45 1 4.6233 0.8695 -1.9017 46 1 3.4774 2.2779 -1.9709 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18364788_2989410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:20:06 Heat of formation + Delta-G solvation = -298.487857 kcal Electronic energy + Delta-G solvation = -39954.358384 eV Core-core repulsion = 33977.905713 eV Total energy + Delta-G solvation = -5976.452671 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.121 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -51.34036 -48.88091 -48.79241 -42.74731 -41.46025 -40.58757 -40.09377 -38.96476 -37.51370 -37.25653 -36.61076 -34.44409 -32.44982 -31.79555 -30.44152 -28.98951 -28.50057 -27.75610 -26.29281 -25.55744 -24.13473 -22.80203 -22.46472 -21.97506 -20.81437 -20.32071 -19.68515 -19.62728 -19.50153 -19.05675 -18.40237 -18.32234 -17.84376 -17.54020 -17.43891 -17.19558 -16.86926 -16.49959 -16.44476 -16.19766 -15.82304 -15.65589 -15.62086 -15.40773 -15.23932 -15.20502 -15.08323 -14.96838 -14.91725 -14.88009 -14.69677 -14.54082 -14.34584 -14.19998 -13.94957 -13.77332 -13.66712 -13.52056 -13.42769 -12.99728 -12.94185 -12.43467 -12.28522 -12.20329 -12.14009 -11.94264 -11.69637 -11.65126 -11.48779 -10.87982 -10.61375 -10.47602 -10.07852 -9.26249 -4.99997 0.24875 0.26223 0.85158 1.21094 1.24036 1.26438 1.43186 1.55720 1.69765 1.94062 2.00109 2.25411 2.31664 2.40348 2.54318 2.61705 2.80813 3.11969 3.24236 3.35264 3.38662 3.63180 3.67438 3.69201 3.82352 3.82790 3.84079 3.92168 4.06662 4.09391 4.22930 4.24354 4.31362 4.33162 4.34740 4.39989 4.50742 4.62442 4.69849 4.91390 4.95676 5.11186 5.21011 5.37698 5.46513 5.63387 5.78573 6.07822 6.26621 6.39244 6.65517 6.98149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.469 3.531 4 O -0.499 6.499 5 C 0.173 3.827 6 N -0.702 5.702 7 C 0.512 3.488 8 O -0.467 6.467 9 C 0.045 3.955 10 O -0.287 6.287 11 C 0.135 3.865 12 C -0.206 4.206 13 C -0.075 4.075 14 C -0.155 4.155 15 C -0.070 4.070 16 O -0.530 6.530 17 Si 0.682 3.318 18 C -0.051 4.051 19 C -0.145 4.145 20 C -0.101 4.101 21 C 0.068 3.932 22 O -0.507 6.507 23 C 0.438 3.562 24 F -0.171 7.171 25 F -0.179 7.179 26 F -0.169 7.169 27 C -0.147 4.147 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.415 0.585 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.118 0.882 37 H 0.376 0.624 38 H -0.261 1.261 39 H -0.258 1.258 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.115 0.885 44 H 0.397 0.603 45 H 0.111 0.889 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.630 0.260 2.263 5.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.226 6.226 3 C 0.310 3.690 4 O -0.387 6.387 5 C 0.083 3.917 6 N -0.360 5.360 7 C 0.296 3.704 8 O -0.337 6.337 9 C -0.034 4.034 10 O -0.199 6.199 11 C 0.090 3.910 12 C -0.225 4.225 13 C -0.093 4.093 14 C -0.156 4.156 15 C -0.180 4.180 16 O -0.337 6.337 17 Si 0.583 3.417 18 C -0.069 4.069 19 C -0.164 4.164 20 C -0.138 4.138 21 C 0.024 3.976 22 O -0.315 6.315 23 C 0.384 3.616 24 F -0.152 7.152 25 F -0.160 7.160 26 F -0.150 7.150 27 C -0.186 4.186 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.252 0.748 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.136 0.864 37 H 0.223 0.777 38 H -0.186 1.186 39 H -0.183 1.183 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.133 0.867 44 H 0.248 0.752 45 H 0.129 0.871 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.715 -0.141 2.369 4.409 hybrid contribution -0.405 0.460 0.241 0.659 sum 3.310 0.320 2.610 4.227 Atomic orbital electron populations 1.23351 0.76946 1.03961 1.02272 1.86992 1.22750 1.30700 1.82127 1.23242 0.90442 0.82563 0.72802 1.90724 1.65961 1.36557 1.45431 1.20620 0.86578 0.87326 0.97169 1.45357 1.43747 1.03168 1.43753 1.20037 0.83092 0.83588 0.83653 1.90845 1.28567 1.85346 1.28938 1.22370 0.98901 0.83632 0.98454 1.86159 1.61409 1.11306 1.61045 1.19059 0.93215 0.85194 0.93569 1.21175 1.00960 0.99166 1.01194 1.20788 0.98308 0.91615 0.98547 1.20200 1.00386 0.95068 0.99920 1.24956 0.96051 0.91197 1.05799 1.86599 1.48485 1.47472 1.51114 0.95135 0.84344 0.82795 0.79402 1.20860 0.94344 0.97210 0.94516 1.20530 1.03242 0.89535 1.03089 1.23483 0.94712 0.96244 0.99379 1.23317 0.88275 0.87354 0.98700 1.86554 1.26380 1.74692 1.43833 1.20947 0.74763 0.88787 0.77147 1.93247 1.88435 1.71493 1.62036 1.93208 1.64545 1.95823 1.62434 1.93238 1.47206 1.88571 1.86020 1.24181 0.97603 1.00876 0.95963 0.91812 0.87966 0.92106 0.74821 0.88484 0.88743 0.85015 0.85265 0.86432 0.77669 1.18578 1.18277 0.84775 0.84656 0.84242 0.86663 0.75151 0.87086 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.03 10.56 101.05 1.07 1.10 16 2 O -0.31 -0.92 6.31 -47.61 -0.30 -1.22 16 3 C 0.47 1.02 7.07 36.01 0.25 1.27 16 4 O -0.50 -2.05 15.79 -18.75 -0.30 -2.35 16 5 C 0.17 -0.20 1.11 -132.15 -0.15 -0.34 16 6 N -0.70 2.00 4.76 -47.92 -0.23 1.77 16 7 C 0.51 -0.22 7.26 -10.98 -0.08 -0.30 16 8 O -0.47 -1.74 13.03 -26.08 -0.34 -2.08 16 9 C 0.05 -0.11 5.22 36.01 0.19 0.08 16 10 O -0.29 -0.36 9.67 -39.32 -0.38 -0.74 16 11 C 0.14 0.07 6.69 -39.21 -0.26 -0.19 16 12 C -0.21 0.28 9.04 -39.43 -0.36 -0.08 16 13 C -0.07 0.10 8.66 -39.60 -0.34 -0.24 16 14 C -0.16 0.07 5.39 -104.60 -0.56 -0.50 16 15 C -0.07 0.05 2.82 36.01 0.10 0.15 16 16 O -0.53 -0.46 12.77 -35.23 -0.45 -0.91 16 17 Si 0.68 -1.04 29.78 -169.99 -5.06 -6.10 16 18 C -0.05 -0.01 9.60 -39.61 -0.38 -0.39 16 19 C -0.15 -0.11 9.99 -39.43 -0.39 -0.51 16 20 C -0.10 0.27 6.41 -25.92 -0.17 0.10 16 21 C 0.07 -0.19 1.36 -89.72 -0.12 -0.31 16 22 O -0.51 2.23 12.79 -35.23 -0.45 1.77 16 23 C 0.44 -0.43 2.85 37.16 0.11 -0.33 16 24 F -0.17 -0.03 17.18 2.25 0.04 0.00 16 25 F -0.18 0.13 16.65 2.25 0.04 0.17 16 26 F -0.17 -0.06 15.76 2.25 0.04 -0.03 16 27 C -0.15 0.26 6.70 -25.83 -0.17 0.09 16 28 H 0.06 0.07 8.14 -51.92 -0.42 -0.35 16 29 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 30 H 0.06 0.03 8.13 -51.93 -0.42 -0.39 16 31 H 0.41 -2.34 8.48 -40.82 -0.35 -2.68 16 32 H 0.10 -0.49 7.65 -51.93 -0.40 -0.89 16 33 H 0.09 -0.44 7.67 -51.93 -0.40 -0.84 16 34 H 0.13 -0.54 6.30 -52.49 -0.33 -0.87 16 35 H 0.13 -0.41 4.87 -52.49 -0.26 -0.67 16 36 H 0.12 -0.16 7.96 -51.93 -0.41 -0.57 16 37 H 0.38 -0.71 8.70 45.56 0.40 -0.31 16 38 H -0.26 -0.08 7.11 56.52 0.40 0.32 16 39 H -0.26 -0.52 7.11 56.52 0.40 -0.12 16 40 H 0.13 -0.06 8.06 -52.49 -0.42 -0.49 16 41 H 0.14 0.05 8.06 -52.48 -0.42 -0.37 16 42 H 0.14 -0.26 7.12 -51.93 -0.37 -0.63 16 43 H 0.12 -0.52 8.11 -51.93 -0.42 -0.94 16 44 H 0.40 -2.71 8.42 45.56 0.38 -2.33 16 45 H 0.11 -0.23 8.14 -51.93 -0.42 -0.65 16 46 H 0.12 -0.14 7.10 -51.93 -0.37 -0.51 16 LS Contribution 400.48 15.07 6.04 6.04 Total: 0.00 -10.95 400.48 -6.89 -17.84 By element: Atomic # 1 Polarization: -9.51 SS G_CDS: -4.25 Total: -13.76 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.27 Total: -0.41 kcal Atomic # 7 Polarization: 2.00 SS G_CDS: -0.23 Total: 1.77 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: -2.22 Total: -5.52 kcal Atomic # 9 Polarization: 0.04 SS G_CDS: 0.11 Total: 0.15 kcal Atomic # 14 Polarization: -1.04 SS G_CDS: -5.06 Total: -6.10 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -10.95 -6.89 -17.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18364788_2989410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -280.649 kcal (2) G-P(sol) polarization free energy of solvation -10.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -291.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -298.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds