Wall clock time and date at job start Tue Mar 9 2021 14:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46700 * 2 1 4 4 C 1.52999 * 109.47000 * 120.00202 * 2 1 3 5 5 C 1.52996 * 109.46810 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47168 * 300.00183 * 5 4 2 7 7 H 1.09002 * 109.46909 * 299.99604 * 6 5 4 8 8 N 1.46505 * 109.46867 * 179.97438 * 6 5 4 9 9 C 1.34777 * 119.99954 * 85.00354 * 8 6 5 10 10 O 1.21699 * 120.00090 * 354.62625 * 9 8 6 11 11 C 1.46671 * 120.00050 * 174.62795 * 9 8 6 12 12 C 1.37867 * 126.23773 * 4.81689 * 11 9 8 13 13 C 1.39834 * 107.09009 * 179.84927 * 12 11 9 14 14 C 1.35447 * 107.86432 * 0.41633 * 13 12 11 15 15 C 1.50703 * 125.56577 * 179.72390 * 14 13 12 16 16 O 1.42900 * 109.46823 * 210.02286 * 15 14 13 17 17 Si 1.86299 * 109.46708 * 330.02197 * 15 14 13 18 18 N 1.35532 * 108.87120 * 359.74129 * 14 13 12 19 19 C 1.46504 * 125.67800 * 180.02562 * 18 14 13 20 20 C 1.52999 * 109.47404 * 60.00181 * 6 5 4 21 21 C 1.52996 * 109.46810 * 300.00038 * 20 6 5 22 22 H 1.09002 * 109.46983 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46994 * 299.99549 * 1 2 3 24 24 H 1.09002 * 109.47076 * 59.99413 * 1 2 3 25 25 H 1.08998 * 109.47006 * 300.00143 * 4 2 1 26 26 H 1.09002 * 109.47034 * 60.00299 * 4 2 1 27 27 H 1.08998 * 109.47146 * 179.97438 * 5 4 2 28 28 H 1.09002 * 109.47165 * 60.00273 * 5 4 2 29 29 H 0.96999 * 120.00323 * 264.99805 * 8 6 5 30 30 H 1.08006 * 126.45487 * 0.02562 * 12 11 9 31 31 H 1.08003 * 126.06729 * 180.16256 * 13 12 11 32 32 H 1.08999 * 109.47325 * 90.02323 * 15 14 13 33 33 H 0.96696 * 114.00021 * 60.00182 * 16 15 14 34 34 H 1.48491 * 110.00156 * 58.68376 * 17 15 14 35 35 H 1.48508 * 109.99784 * 180.02562 * 17 15 14 36 36 H 1.09000 * 109.47188 * 271.49532 * 19 18 14 37 37 H 1.09002 * 109.47261 * 31.49781 * 19 18 14 38 38 H 1.09003 * 109.47213 * 151.50308 * 19 18 14 39 39 H 1.09002 * 109.47034 * 59.99845 * 20 6 5 40 40 H 1.08995 * 109.47250 * 179.97438 * 20 6 5 41 41 H 1.09002 * 109.46886 * 179.97438 * 21 20 6 42 42 H 1.09002 * 109.47165 * 299.99727 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0805 -1.4415 0.0002 7 1 3.7176 -2.4693 0.0000 8 7 5.5456 -1.4404 0.0002 9 6 6.2202 -2.3961 0.6696 10 8 5.6163 -3.2014 1.3535 11 6 7.6821 -2.4654 0.5738 12 6 8.4992 -1.5701 -0.0830 13 6 9.8142 -2.0158 0.0826 14 6 9.7776 -3.1556 0.8135 15 6 10.9753 -3.9745 1.2209 16 8 10.5977 -5.3483 1.3315 17 14 12.3131 -3.7997 -0.0639 18 7 8.4879 -3.4397 1.1183 19 6 8.0280 -4.5915 1.8981 20 6 3.5706 -0.7202 -1.2490 21 6 2.0406 -0.7208 -1.2493 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.6767 -0.2075 2.1392 26 1 1.6767 -1.7490 1.2491 27 1 3.9334 -1.2342 2.1397 28 1 3.9330 0.3071 1.2498 29 1 6.0301 -0.7519 -0.4816 30 1 8.1834 -0.6886 -0.6214 31 1 10.7013 -1.5385 -0.3069 32 1 11.3469 -3.6212 2.1827 33 1 10.2569 -5.7298 0.5110 34 1 12.6922 -2.3716 -0.2113 35 1 13.4997 -4.6031 0.3258 36 1 7.8567 -5.4366 1.2313 37 1 8.7860 -4.8577 2.6347 38 1 7.0989 -4.3373 2.4083 39 1 3.9335 0.3076 -1.2487 40 1 3.9346 -1.2334 -2.1390 41 1 1.6773 -0.2065 -2.1391 42 1 1.6776 -1.7486 -1.2496 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_4279154_10803936.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:33:04 Heat of formation + Delta-G solvation = -37.308750 kcal Electronic energy + Delta-G solvation = -22301.340063 eV Core-core repulsion = 19054.792414 eV Total energy + Delta-G solvation = -3246.547649 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.55636 -40.73643 -39.09679 -37.77721 -35.73829 -33.80136 -32.47770 -31.80021 -31.00386 -27.61712 -27.33857 -26.04681 -23.79775 -23.23294 -22.18044 -21.29038 -20.95382 -20.24192 -18.85173 -18.12869 -17.22060 -16.88488 -16.45933 -15.98332 -15.65711 -15.40772 -15.28616 -15.17418 -15.01972 -14.77997 -14.45194 -14.39123 -14.14606 -13.71870 -13.64223 -13.26521 -13.22332 -13.17002 -12.94952 -12.58322 -12.23856 -12.13093 -12.00584 -11.95737 -11.69487 -11.34303 -11.15267 -10.91909 -10.67059 -10.05610 -9.72028 -9.06231 -5.04476 0.45481 1.11121 1.52125 1.70228 1.71329 1.97963 2.40440 2.44503 3.20832 3.55029 3.60445 3.67730 3.76556 3.92000 4.01277 4.05005 4.16277 4.31767 4.36919 4.37253 4.43767 4.44195 4.48568 4.53056 4.53547 4.71383 4.75093 4.83843 4.88507 4.95266 5.00800 5.02423 5.11550 5.14554 5.17833 5.22431 5.28480 5.36838 5.48178 5.53184 5.73460 6.00698 6.16593 6.36007 6.52757 7.23827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 H 0.071 0.929 4 C -0.112 4.112 5 C -0.130 4.130 6 C 0.150 3.850 7 H 0.088 0.912 8 N -0.716 5.716 9 C 0.591 3.409 10 O -0.546 6.546 11 C -0.052 4.052 12 C -0.135 4.135 13 C -0.205 4.205 14 C 0.015 3.985 15 C -0.050 4.050 16 O -0.543 6.543 17 Si 0.723 3.277 18 N -0.390 5.390 19 C 0.064 3.936 20 C -0.127 4.127 21 C -0.111 4.111 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.402 0.598 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.119 0.881 33 H 0.380 0.620 34 H -0.252 1.252 35 H -0.253 1.253 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.129 1.436 -4.135 4.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.168 4.168 6 C 0.046 3.954 7 H 0.106 0.894 8 N -0.367 5.367 9 C 0.379 3.621 10 O -0.425 6.425 11 C -0.166 4.166 12 C -0.162 4.162 13 C -0.229 4.229 14 C -0.104 4.104 15 C -0.160 4.160 16 O -0.348 6.348 17 Si 0.622 3.378 18 N -0.063 5.063 19 C -0.076 4.076 20 C -0.165 4.165 21 C -0.149 4.149 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.237 0.763 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.136 0.864 33 H 0.228 0.772 34 H -0.176 1.176 35 H -0.178 1.178 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.288 0.866 -2.989 3.126 hybrid contribution -0.090 0.619 0.391 0.737 sum 0.197 1.485 -2.599 2.999 Atomic orbital electron populations 1.21837 0.94990 1.01993 1.01836 1.21192 0.95720 0.99684 0.94742 0.91090 1.21563 0.94572 1.01090 0.97791 1.21927 0.95960 1.00763 0.98189 1.21029 0.78110 1.01038 0.95216 0.89364 1.45732 1.07280 1.30198 1.53497 1.16977 0.85001 0.80903 0.79175 1.90794 1.69987 1.41561 1.40121 1.20055 0.91338 0.95673 1.09522 1.21277 0.92564 0.99821 1.02490 1.20637 0.98077 0.97915 1.06279 1.21115 0.85351 0.99665 1.04228 1.24973 0.99513 0.81994 1.09551 1.86493 1.86260 1.22760 1.39328 0.94009 0.76165 0.82116 0.85469 1.43756 1.04822 1.19495 1.38179 1.22399 1.02829 0.86136 0.96281 1.21818 0.96700 1.00983 0.96988 1.21546 0.93978 1.01301 0.98062 0.92583 0.92587 0.92593 0.91577 0.91638 0.91276 0.91744 0.76287 0.83681 0.83575 0.86399 0.77218 1.17641 1.17788 0.90565 0.88872 0.88082 0.91204 0.91076 0.91251 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.16 9.20 37.16 0.34 0.50 16 2 C -0.09 0.10 2.72 -90.62 -0.25 -0.14 16 3 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 4 C -0.11 0.03 5.20 -26.73 -0.14 -0.11 16 5 C -0.13 -0.06 5.49 -26.73 -0.15 -0.20 16 6 C 0.15 0.01 2.41 -67.93 -0.16 -0.15 16 7 H 0.09 0.17 7.66 -51.93 -0.40 -0.23 16 8 N -0.72 -0.09 5.06 -55.11 -0.28 -0.37 16 9 C 0.59 1.79 7.73 -12.86 -0.10 1.69 16 10 O -0.55 -3.26 14.28 5.19 0.07 -3.19 16 11 C -0.05 -0.12 6.89 -81.98 -0.56 -0.69 16 12 C -0.14 -0.08 10.35 -39.12 -0.41 -0.49 16 13 C -0.21 -0.13 9.37 -39.98 -0.37 -0.51 16 14 C 0.01 0.01 6.14 -81.95 -0.50 -0.49 16 15 C -0.05 0.03 2.89 36.01 0.10 0.13 16 16 O -0.54 0.35 10.41 -35.23 -0.37 -0.02 16 17 Si 0.72 -1.28 31.29 -169.99 -5.32 -6.60 16 18 N -0.39 -0.83 3.16 -115.62 -0.37 -1.19 16 19 C 0.06 0.08 9.41 59.85 0.56 0.65 16 20 C -0.13 0.22 5.39 -26.73 -0.14 0.08 16 21 C -0.11 0.17 5.20 -26.73 -0.14 0.03 16 22 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 23 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 24 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 25 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 26 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 27 H 0.07 0.18 8.08 -51.93 -0.42 -0.24 16 28 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 29 H 0.40 -0.90 7.50 -40.82 -0.31 -1.21 16 30 H 0.15 -0.31 7.45 -52.48 -0.39 -0.70 16 31 H 0.15 -0.10 6.62 -52.48 -0.35 -0.45 16 32 H 0.12 -0.02 7.96 -51.93 -0.41 -0.43 16 33 H 0.38 -1.48 8.70 45.56 0.40 -1.08 16 34 H -0.25 -0.05 6.76 56.52 0.38 0.33 16 35 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 36 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 37 H 0.09 0.07 6.90 -51.93 -0.36 -0.28 16 38 H 0.10 0.30 6.14 -51.93 -0.32 -0.02 16 39 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 40 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 41 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 42 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 LS Contribution 331.19 15.07 4.99 4.99 Total: 0.00 -6.09 331.19 -10.03 -16.12 By element: Atomic # 1 Polarization: -3.18 SS G_CDS: -6.85 Total: -10.03 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.92 Total: 0.28 kcal Atomic # 7 Polarization: -0.92 SS G_CDS: -0.64 Total: -1.56 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: -0.29 Total: -3.21 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: -5.32 Total: -6.60 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -6.09 -10.03 -16.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_10803936.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.191 kcal (2) G-P(sol) polarization free energy of solvation -6.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds