Wall clock time and date at job start Tue Mar 9 2021 14:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46700 * 2 1 4 4 C 1.52999 * 109.47000 * 120.00202 * 2 1 3 5 5 C 1.52996 * 109.46810 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47168 * 300.00183 * 5 4 2 7 7 H 1.09002 * 109.46909 * 299.99604 * 6 5 4 8 8 N 1.46505 * 109.46867 * 179.97438 * 6 5 4 9 9 C 1.34777 * 119.99954 * 85.00354 * 8 6 5 10 10 O 1.21699 * 120.00090 * 354.62625 * 9 8 6 11 11 C 1.46671 * 120.00050 * 174.62795 * 9 8 6 12 12 C 1.37867 * 126.23773 * 4.81689 * 11 9 8 13 13 C 1.39834 * 107.09009 * 179.84927 * 12 11 9 14 14 C 1.35447 * 107.86432 * 0.41633 * 13 12 11 15 15 C 1.50703 * 125.56577 * 179.72390 * 14 13 12 16 16 O 1.42900 * 109.46823 * 210.02286 * 15 14 13 17 17 Si 1.86299 * 109.46708 * 330.02197 * 15 14 13 18 18 N 1.35532 * 108.87120 * 359.74129 * 14 13 12 19 19 C 1.46504 * 125.67800 * 180.02562 * 18 14 13 20 20 C 1.52999 * 109.47404 * 60.00181 * 6 5 4 21 21 C 1.52996 * 109.46810 * 300.00038 * 20 6 5 22 22 H 1.09002 * 109.46983 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46994 * 299.99549 * 1 2 3 24 24 H 1.09002 * 109.47076 * 59.99413 * 1 2 3 25 25 H 1.08998 * 109.47006 * 300.00143 * 4 2 1 26 26 H 1.09002 * 109.47034 * 60.00299 * 4 2 1 27 27 H 1.08998 * 109.47146 * 179.97438 * 5 4 2 28 28 H 1.09002 * 109.47165 * 60.00273 * 5 4 2 29 29 H 0.96999 * 120.00323 * 264.99805 * 8 6 5 30 30 H 1.08006 * 126.45487 * 0.02562 * 12 11 9 31 31 H 1.08003 * 126.06729 * 180.16256 * 13 12 11 32 32 H 1.08999 * 109.47325 * 90.02323 * 15 14 13 33 33 H 0.96696 * 114.00021 * 60.00182 * 16 15 14 34 34 H 1.48491 * 110.00156 * 58.68376 * 17 15 14 35 35 H 1.48508 * 109.99784 * 180.02562 * 17 15 14 36 36 H 1.09000 * 109.47188 * 271.49532 * 19 18 14 37 37 H 1.09002 * 109.47261 * 31.49781 * 19 18 14 38 38 H 1.09003 * 109.47213 * 151.50308 * 19 18 14 39 39 H 1.09002 * 109.47034 * 59.99845 * 20 6 5 40 40 H 1.08995 * 109.47250 * 179.97438 * 20 6 5 41 41 H 1.09002 * 109.46886 * 179.97438 * 21 20 6 42 42 H 1.09002 * 109.47165 * 299.99727 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0805 -1.4415 0.0002 7 1 3.7176 -2.4693 0.0000 8 7 5.5456 -1.4404 0.0002 9 6 6.2202 -2.3961 0.6696 10 8 5.6163 -3.2014 1.3535 11 6 7.6821 -2.4654 0.5738 12 6 8.4992 -1.5701 -0.0830 13 6 9.8142 -2.0158 0.0826 14 6 9.7776 -3.1556 0.8135 15 6 10.9753 -3.9745 1.2209 16 8 10.5977 -5.3483 1.3315 17 14 12.3131 -3.7997 -0.0639 18 7 8.4879 -3.4397 1.1183 19 6 8.0280 -4.5915 1.8981 20 6 3.5706 -0.7202 -1.2490 21 6 2.0406 -0.7208 -1.2493 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.6767 -0.2075 2.1392 26 1 1.6767 -1.7490 1.2491 27 1 3.9334 -1.2342 2.1397 28 1 3.9330 0.3071 1.2498 29 1 6.0301 -0.7519 -0.4816 30 1 8.1834 -0.6886 -0.6214 31 1 10.7013 -1.5385 -0.3069 32 1 11.3469 -3.6212 2.1827 33 1 10.2569 -5.7298 0.5110 34 1 12.6922 -2.3716 -0.2113 35 1 13.4997 -4.6031 0.3258 36 1 7.8567 -5.4366 1.2313 37 1 8.7860 -4.8577 2.6347 38 1 7.0989 -4.3373 2.4083 39 1 3.9335 0.3076 -1.2487 40 1 3.9346 -1.2334 -2.1390 41 1 1.6773 -0.2065 -2.1391 42 1 1.6776 -1.7486 -1.2496 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_10803936.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:33:03 Heat of formation + Delta-G solvation = -33.242111 kcal Electronic energy + Delta-G solvation = -22301.163720 eV Core-core repulsion = 19054.792414 eV Total energy + Delta-G solvation = -3246.371306 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.62534 -40.81869 -39.17329 -37.73710 -35.83862 -33.86578 -32.52341 -31.76625 -31.01814 -27.64286 -27.40722 -26.04170 -23.79201 -23.26649 -22.19461 -21.37451 -20.93649 -20.29046 -18.89539 -18.13179 -17.33658 -16.94781 -16.49704 -16.03997 -15.66989 -15.44331 -15.24004 -15.17121 -15.08476 -14.80766 -14.51201 -14.42145 -14.17301 -13.73908 -13.63461 -13.29421 -13.22385 -13.15483 -13.01792 -12.54122 -12.23304 -12.10630 -12.02515 -11.93378 -11.67678 -11.31350 -11.16922 -11.00559 -10.69518 -10.16774 -9.78195 -9.12651 -4.91166 0.34987 1.17070 1.51843 1.70297 1.76003 2.02573 2.30522 2.34240 3.31873 3.55503 3.61093 3.71551 3.74300 3.93560 3.94717 4.09290 4.18053 4.28777 4.33287 4.38732 4.41764 4.44115 4.51067 4.53085 4.56854 4.70112 4.77030 4.80866 4.95176 4.99117 5.02874 5.09630 5.11033 5.14653 5.18262 5.23442 5.34451 5.40614 5.46156 5.55937 5.71108 5.95616 6.11044 6.47780 6.58152 7.12434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 H 0.077 0.923 4 C -0.110 4.110 5 C -0.124 4.124 6 C 0.152 3.848 7 H 0.065 0.935 8 N -0.702 5.702 9 C 0.586 3.414 10 O -0.586 6.586 11 C -0.080 4.080 12 C -0.124 4.124 13 C -0.214 4.214 14 C 0.014 3.986 15 C -0.059 4.059 16 O -0.555 6.555 17 Si 0.811 3.189 18 N -0.402 5.402 19 C 0.071 3.929 20 C -0.118 4.118 21 C -0.110 4.110 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.416 0.584 30 H 0.173 0.827 31 H 0.162 0.838 32 H 0.112 0.888 33 H 0.394 0.606 34 H -0.273 1.273 35 H -0.295 1.295 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.338 2.582 -5.599 6.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 H 0.095 0.905 4 C -0.148 4.148 5 C -0.163 4.163 6 C 0.048 3.952 7 H 0.083 0.917 8 N -0.353 5.353 9 C 0.375 3.625 10 O -0.468 6.468 11 C -0.194 4.194 12 C -0.150 4.150 13 C -0.237 4.237 14 C -0.104 4.104 15 C -0.168 4.168 16 O -0.362 6.362 17 Si 0.714 3.286 18 N -0.075 5.075 19 C -0.070 4.070 20 C -0.156 4.156 21 C -0.148 4.148 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.253 0.747 30 H 0.190 0.810 31 H 0.180 0.820 32 H 0.130 0.870 33 H 0.244 0.756 34 H -0.199 1.199 35 H -0.222 1.222 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.722 2.038 -4.479 4.973 hybrid contribution -0.205 0.248 0.890 0.946 sum 0.517 2.286 -3.589 4.287 Atomic orbital electron populations 1.21837 0.94972 1.01801 1.02054 1.21164 0.95706 0.99804 0.94276 0.90479 1.21542 0.94066 1.00698 0.98540 1.21856 0.96413 1.00823 0.97206 1.21001 0.78030 1.00019 0.96175 0.91709 1.45641 1.07328 1.29745 1.52596 1.17231 0.85500 0.80875 0.78886 1.90772 1.70790 1.43243 1.42006 1.20182 0.91159 0.96829 1.11188 1.21655 0.92195 0.99874 1.01300 1.20910 0.98687 0.97826 1.06304 1.21441 0.85216 0.99925 1.03801 1.25221 0.99521 0.81938 1.10074 1.86463 1.86370 1.22656 1.40724 0.92942 0.72904 0.79063 0.83724 1.43902 1.05340 1.19728 1.38539 1.22292 1.01830 0.86423 0.96467 1.21772 0.96440 1.01544 0.95873 1.21551 0.94108 1.00975 0.98203 0.93006 0.92742 0.91990 0.91653 0.92661 0.94038 0.90790 0.74672 0.80954 0.82022 0.87026 0.75582 1.19898 1.22248 0.89585 0.88585 0.90223 0.89674 0.90389 0.90141 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.33 9.20 71.99 0.66 0.99 16 2 C -0.09 0.22 2.72 -10.79 -0.03 0.19 16 3 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 4 C -0.11 -0.06 5.20 30.59 0.16 0.10 16 5 C -0.12 -0.24 5.49 30.59 0.17 -0.07 16 6 C 0.15 0.13 2.41 44.99 0.11 0.24 16 7 H 0.06 0.38 7.66 -2.39 -0.02 0.37 16 8 N -0.70 -0.42 5.06 -446.49 -2.26 -2.68 16 9 C 0.59 4.33 7.73 86.44 0.67 5.00 16 10 O -0.59 -8.57 14.28 -4.34 -0.06 -8.63 16 11 C -0.08 -0.42 6.89 40.34 0.28 -0.14 16 12 C -0.12 -0.03 10.35 22.57 0.23 0.20 16 13 C -0.21 -0.05 9.37 22.01 0.21 0.16 16 14 C 0.01 0.02 6.14 41.34 0.25 0.28 16 15 C -0.06 0.07 2.89 71.24 0.21 0.27 16 16 O -0.55 0.69 10.41 -148.98 -1.55 -0.87 16 17 Si 0.81 -3.31 31.29 68.60 2.15 -1.17 16 18 N -0.40 -2.00 3.16 -519.70 -1.64 -3.64 16 19 C 0.07 0.29 9.41 127.77 1.20 1.49 16 20 C -0.12 0.52 5.39 30.59 0.16 0.69 16 21 C -0.11 0.40 5.20 30.59 0.16 0.55 16 22 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 23 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 24 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 25 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 26 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 27 H 0.04 0.32 8.08 -2.39 -0.02 0.30 16 28 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 29 H 0.42 -2.24 7.50 -92.71 -0.70 -2.94 16 30 H 0.17 -1.11 7.45 -2.91 -0.02 -1.13 16 31 H 0.16 -0.51 6.62 -2.91 -0.02 -0.53 16 32 H 0.11 0.00 7.96 -2.39 -0.02 -0.02 16 33 H 0.39 -3.18 8.70 -74.06 -0.64 -3.82 16 34 H -0.27 0.16 6.76 99.48 0.67 0.83 16 35 H -0.29 -0.86 7.11 99.48 0.71 -0.15 16 36 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.10 0.28 6.90 -2.39 -0.02 0.27 16 38 H 0.08 0.70 6.14 -2.39 -0.01 0.68 16 39 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 41 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 42 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: 0.00 -16.00 331.19 0.75 -15.25 By element: Atomic # 1 Polarization: -7.90 SS G_CDS: -0.32 Total: -8.22 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 4.44 Total: 9.95 kcal Atomic # 7 Polarization: -2.42 SS G_CDS: -3.90 Total: -6.32 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -1.61 Total: -9.49 kcal Atomic # 14 Polarization: -3.31 SS G_CDS: 2.15 Total: -1.17 kcal Total: -16.00 0.75 -15.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_10803936.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.990 kcal (2) G-P(sol) polarization free energy of solvation -16.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds