Wall clock time and date at job start Tue Mar 9 2021 14:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35448 * 125.56569 * 2 1 4 4 C 1.50707 * 126.06727 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.47051 * 247.99720 * 4 3 2 6 6 Si 1.86295 * 109.46963 * 127.99521 * 4 3 2 7 7 C 1.39836 * 107.86434 * 179.97438 * 3 2 1 8 8 C 1.50700 * 126.45484 * 180.02562 * 7 3 2 9 9 C 1.37867 * 107.08541 * 359.97438 * 7 3 2 10 10 C 1.46678 * 126.22851 * 179.97438 * 9 7 3 11 11 O 1.21691 * 120.00633 * 0.02562 * 10 9 7 12 12 N 1.34778 * 119.99613 * 180.02562 * 10 9 7 13 13 C 1.46503 * 120.00023 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.46942 * 325.00051 * 13 12 10 15 15 C 1.53005 * 109.47094 * 85.00276 * 13 12 10 16 16 C 1.52999 * 109.47183 * 180.02562 * 15 13 12 17 17 C 1.52994 * 109.47026 * 299.99809 * 16 15 13 18 18 H 1.09005 * 109.47562 * 300.00317 * 17 16 15 19 19 C 1.52999 * 109.47026 * 180.02562 * 17 16 15 20 20 C 1.53003 * 109.47506 * 59.99989 * 17 16 15 21 21 C 1.52999 * 109.46987 * 300.00035 * 20 17 16 22 22 N 1.35534 * 125.56132 * 179.68425 * 2 1 3 23 23 H 1.09004 * 109.47314 * 84.67697 * 1 2 3 24 24 H 1.09004 * 109.47640 * 324.67702 * 1 2 3 25 25 H 1.09002 * 109.47394 * 204.67526 * 1 2 3 26 26 H 1.09003 * 109.46871 * 8.00081 * 4 3 2 27 27 H 0.96703 * 113.99331 * 299.99883 * 5 4 3 28 28 H 1.48503 * 110.00039 * 184.71019 * 6 4 3 29 29 H 1.48501 * 110.00394 * 306.02653 * 6 4 3 30 30 H 1.08999 * 109.47397 * 89.99889 * 8 7 3 31 31 H 1.09007 * 109.46954 * 210.00277 * 8 7 3 32 32 H 1.09000 * 109.46986 * 329.99562 * 8 7 3 33 33 H 0.97007 * 120.00042 * 0.02562 * 12 10 9 34 34 H 1.08999 * 109.46571 * 300.00263 * 15 13 12 35 35 H 1.08996 * 109.46861 * 59.99536 * 15 13 12 36 36 H 1.08996 * 109.47130 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.46964 * 59.99709 * 16 15 13 38 38 H 1.08999 * 109.47436 * 299.99661 * 19 17 16 39 39 H 1.08997 * 109.46922 * 60.00502 * 19 17 16 40 40 H 1.09008 * 109.46966 * 179.97438 * 19 17 16 41 41 H 1.08996 * 109.47733 * 180.02562 * 20 17 16 42 42 H 1.09007 * 109.46950 * 59.99671 * 20 17 16 43 43 H 1.08996 * 109.47666 * 299.99531 * 21 20 17 44 44 H 1.09007 * 109.46919 * 179.97438 * 21 20 17 45 45 H 0.97000 * 125.68261 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 1.8199 2.5321 0.0005 5 8 2.1484 3.1435 -1.2485 6 14 2.6509 3.4618 1.3847 7 6 3.6269 0.6766 0.0006 8 6 4.8485 1.5591 0.0014 9 6 3.6121 -0.7020 0.0015 10 6 4.7859 -1.5815 0.0019 11 8 5.9048 -1.1031 0.0018 12 7 4.6252 -2.9197 0.0023 13 6 5.7975 -3.7983 0.0021 14 1 6.5929 -3.3427 -0.5878 15 6 6.2816 -4.0032 1.4390 16 6 7.5063 -4.9202 1.4387 17 6 7.1308 -6.2724 0.8294 18 1 6.3355 -6.7284 1.4191 19 6 8.3553 -7.1896 0.8297 20 6 6.6467 -6.0676 -0.6075 21 6 5.4220 -5.1506 -0.6072 22 7 2.2952 -1.1025 0.0061 23 1 -0.3634 0.0953 -1.0233 24 1 -0.3634 0.8385 0.5942 25 1 -0.3634 -0.9338 0.4290 26 1 0.7396 2.5562 0.1440 27 1 3.0957 3.1574 -1.4425 28 1 2.1077 4.8414 1.4678 29 1 2.4374 2.7535 2.6723 30 1 5.1426 1.7717 1.0292 31 1 5.6645 1.0505 -0.5122 32 1 4.6221 2.4933 -0.5125 33 1 3.7333 -3.3011 0.0020 34 1 6.5495 -3.0398 1.8729 35 1 5.4862 -4.4587 2.0288 36 1 7.8514 -5.0658 2.4623 37 1 8.3015 -4.4642 0.8490 38 1 9.1509 -6.7339 0.2402 39 1 8.6997 -7.3356 1.8535 40 1 8.0876 -8.1532 0.3960 41 1 6.3787 -7.0309 -1.0415 42 1 7.4419 -5.6115 -1.1973 43 1 4.6267 -5.6065 -0.0175 44 1 5.0774 -5.0043 -1.6310 45 1 1.9833 -2.0210 0.0115 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_12297754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:33:08 Heat of formation + Delta-G solvation = -49.709959 kcal Electronic energy + Delta-G solvation = -24284.511412 eV Core-core repulsion = 20881.888387 eV Total energy + Delta-G solvation = -3402.623025 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.67854 -40.81936 -39.18044 -37.73753 -35.82668 -33.77332 -33.18645 -31.91980 -31.78691 -29.24266 -27.90685 -26.79174 -25.89126 -23.79159 -22.79069 -21.92120 -21.08570 -20.73051 -20.12486 -19.27057 -17.69369 -17.35338 -16.74774 -16.58584 -15.96004 -15.77003 -15.25637 -15.24454 -15.19113 -15.04045 -14.84379 -14.36467 -14.20943 -14.16830 -13.90923 -13.64189 -13.59798 -13.25017 -13.19458 -13.17910 -13.08117 -12.68731 -12.54716 -12.32960 -12.12350 -12.00996 -11.93826 -11.68456 -11.32551 -11.15708 -10.94763 -10.52986 -10.19211 -9.56915 -9.00642 -4.94628 0.36492 1.22508 1.53651 1.74257 1.92937 1.98914 2.11930 2.28110 3.60438 3.67456 3.70207 3.76550 3.82763 3.92608 3.99389 4.06750 4.13506 4.16656 4.33245 4.38813 4.42061 4.46625 4.50606 4.54260 4.60055 4.68748 4.75731 4.77245 4.90837 4.93467 4.95582 4.98123 5.04018 5.06321 5.11295 5.16415 5.18063 5.20356 5.30947 5.35284 5.38675 5.45147 5.54210 5.69587 5.88723 6.35963 6.52597 6.79978 7.10721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.082 3.918 3 C -0.229 4.229 4 C -0.026 4.026 5 O -0.555 6.555 6 Si 0.744 3.256 7 C -0.072 4.072 8 C -0.102 4.102 9 C -0.078 4.078 10 C 0.589 3.411 11 O -0.559 6.559 12 N -0.718 5.718 13 C 0.149 3.851 14 H 0.068 0.932 15 C -0.123 4.123 16 C -0.111 4.111 17 C -0.091 4.091 18 H 0.075 0.925 19 C -0.150 4.150 20 C -0.111 4.111 21 C -0.119 4.119 22 N -0.523 5.523 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.113 0.887 27 H 0.387 0.613 28 H -0.290 1.290 29 H -0.296 1.296 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.407 0.593 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.582 -5.160 -0.311 5.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.038 4.038 3 C -0.235 4.235 4 C -0.137 4.137 5 O -0.363 6.363 6 Si 0.651 3.349 7 C -0.081 4.081 8 C -0.158 4.158 9 C -0.190 4.190 10 C 0.378 3.622 11 O -0.438 6.438 12 N -0.368 5.368 13 C 0.045 3.955 14 H 0.086 0.914 15 C -0.162 4.162 16 C -0.149 4.149 17 C -0.109 4.109 18 H 0.094 0.906 19 C -0.207 4.207 20 C -0.149 4.149 21 C -0.157 4.157 22 N -0.122 5.122 23 H 0.106 0.894 24 H 0.105 0.895 25 H 0.107 0.893 26 H 0.130 0.870 27 H 0.237 0.763 28 H -0.217 1.217 29 H -0.223 1.223 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.242 0.758 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -2.504 -4.537 0.413 5.199 hybrid contribution -0.860 -0.936 0.036 1.271 sum -3.363 -5.473 0.450 6.440 Atomic orbital electron populations 1.20592 0.85608 1.04812 1.04302 1.20720 0.94733 0.85459 1.02856 1.19601 0.92673 0.95631 1.15628 1.24269 1.03479 0.91200 0.94796 1.86461 1.31105 1.80797 1.37951 0.93796 0.90371 0.75825 0.74950 1.20023 0.95200 0.91727 1.01125 1.20471 0.93882 0.98154 1.03301 1.20018 0.83438 0.94055 1.21487 1.17161 0.87219 0.82055 0.75783 1.90808 1.25438 1.75696 1.51888 1.45870 1.10587 1.05011 1.75361 1.20994 0.87471 0.90302 0.96705 0.91359 1.21849 0.98679 0.99351 0.96325 1.21541 0.96970 0.95082 1.01274 1.21155 0.98251 0.95062 0.96452 0.90625 1.21836 0.97555 0.99422 1.01875 1.21550 0.97010 0.99792 0.96515 1.21768 0.99281 0.93079 1.01536 1.41768 1.04479 1.09041 1.56890 0.89377 0.89472 0.89281 0.86989 0.76266 1.21689 1.22312 0.90159 0.90806 0.89054 0.75778 0.93605 0.90993 0.91539 0.92482 0.92927 0.92670 0.92117 0.90356 0.92178 0.89932 0.90767 0.73037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.56 10.00 71.23 0.71 1.28 16 2 C 0.08 -0.03 7.13 41.34 0.29 0.26 16 3 C -0.23 -0.61 4.72 -20.12 -0.09 -0.71 16 4 C -0.03 -0.05 2.86 71.24 0.20 0.16 16 5 O -0.56 -1.59 12.88 -148.98 -1.92 -3.51 16 6 Si 0.74 1.68 29.56 68.60 2.03 3.71 16 7 C -0.07 -0.30 5.83 -19.57 -0.11 -0.42 16 8 C -0.10 -0.17 7.98 71.24 0.57 0.40 16 9 C -0.08 -0.28 7.06 40.35 0.28 0.00 16 10 C 0.59 3.32 7.75 86.45 0.67 3.99 16 11 O -0.56 -7.09 14.46 -4.32 -0.06 -7.16 16 12 N -0.72 0.69 5.07 -446.48 -2.27 -1.58 16 13 C 0.15 -0.02 2.45 44.99 0.11 0.09 16 14 H 0.07 0.34 7.58 -2.39 -0.02 0.33 16 15 C -0.12 -0.08 5.49 30.60 0.17 0.09 16 16 C -0.11 0.05 5.20 30.59 0.16 0.21 16 17 C -0.09 0.27 2.72 -10.79 -0.03 0.24 16 18 H 0.08 -0.28 8.14 -2.38 -0.02 -0.30 16 19 C -0.15 0.39 9.19 71.98 0.66 1.05 16 20 C -0.11 0.43 5.21 30.60 0.16 0.59 16 21 C -0.12 0.57 5.39 30.60 0.16 0.74 16 22 N -0.52 1.21 5.99 -171.94 -1.03 0.18 16 23 H 0.09 -0.56 8.14 -2.38 -0.02 -0.58 16 24 H 0.09 -0.53 7.23 -2.38 -0.02 -0.55 16 25 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 26 H 0.11 0.08 6.65 -2.39 -0.02 0.07 16 27 H 0.39 -1.34 6.90 -74.06 -0.51 -1.85 16 28 H -0.29 -2.30 7.11 99.48 0.71 -1.59 16 29 H -0.30 -2.51 7.11 99.48 0.71 -1.81 16 30 H 0.08 0.06 7.65 -2.39 -0.02 0.04 16 31 H 0.07 0.42 6.49 -2.38 -0.02 0.40 16 32 H 0.09 -0.41 5.30 -2.39 -0.01 -0.42 16 33 H 0.41 -2.94 7.73 -92.70 -0.72 -3.66 16 34 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.06 -0.21 8.14 -2.38 -0.02 -0.23 16 41 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 42 H 0.06 -0.13 8.14 -2.38 -0.02 -0.15 16 43 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 44 H 0.07 -0.39 8.14 -2.38 -0.02 -0.40 16 45 H 0.43 -3.96 8.19 -92.71 -0.76 -4.72 16 Total: 0.00 -17.56 348.85 -0.27 -17.83 By element: Atomic # 1 Polarization: -16.51 SS G_CDS: -0.94 Total: -17.45 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 3.92 Total: 7.97 kcal Atomic # 7 Polarization: 1.90 SS G_CDS: -3.30 Total: -1.39 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -1.98 Total: -10.66 kcal Atomic # 14 Polarization: 1.68 SS G_CDS: 2.03 Total: 3.71 kcal Total: -17.56 -0.27 -17.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_12297754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.880 kcal (2) G-P(sol) polarization free energy of solvation -17.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds