Wall clock time and date at job start Tue Mar 9 2021 14:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08994 * 109.47710 * 2 1 4 4 C 1.53008 * 109.46919 * 119.99720 * 2 1 3 5 5 C 1.53005 * 109.46910 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47127 * 300.00012 * 5 4 2 7 7 H 1.09000 * 109.46833 * 300.00296 * 6 5 4 8 8 N 1.46500 * 109.47051 * 180.02562 * 6 5 4 9 9 C 1.34777 * 120.00065 * 155.00114 * 8 6 5 10 10 O 1.21565 * 119.99743 * 359.97438 * 9 8 6 11 11 C 1.47688 * 119.99880 * 179.97438 * 9 8 6 12 12 C 1.39831 * 120.16578 * 179.97438 * 11 9 8 13 13 F 1.35098 * 120.10803 * 0.02562 * 12 11 9 14 14 C 1.38322 * 119.77887 * 179.97438 * 12 11 9 15 15 C 1.38205 * 120.11576 * 0.26166 * 14 12 11 16 16 C 1.38455 * 120.33851 * 359.48118 * 15 14 12 17 17 C 1.50709 * 119.88735 * 180.23843 * 16 15 14 18 18 O 1.42899 * 109.46992 * 245.27439 * 17 16 15 19 19 Si 1.86296 * 109.47070 * 5.27711 * 17 16 15 20 20 C 1.37850 * 120.22366 * 0.51819 * 16 15 14 21 21 C 1.52998 * 109.47204 * 60.00052 * 6 5 4 22 22 C 1.52998 * 109.47062 * 239.99306 * 2 1 3 23 23 H 1.09005 * 109.47456 * 300.00402 * 1 2 3 24 24 H 1.08998 * 109.47458 * 60.00348 * 1 2 3 25 25 H 1.09000 * 109.47610 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47085 * 60.00012 * 4 2 1 27 27 H 1.08998 * 109.47337 * 299.99649 * 4 2 1 28 28 H 1.09004 * 109.46857 * 180.02562 * 5 4 2 29 29 H 1.08998 * 109.46776 * 60.00003 * 5 4 2 30 30 H 0.97001 * 119.99695 * 334.99690 * 8 6 5 31 31 H 1.08002 * 119.93718 * 179.97438 * 14 12 11 32 32 H 1.08005 * 119.82613 * 179.72427 * 15 14 12 33 33 H 1.09000 * 109.46984 * 125.28296 * 17 16 15 34 34 H 0.96696 * 113.99929 * 179.97438 * 18 17 16 35 35 H 1.48494 * 110.00027 * 299.99966 * 19 17 16 36 36 H 1.48496 * 109.99918 * 61.32230 * 19 17 16 37 37 H 1.08001 * 120.06566 * 179.72028 * 20 16 15 38 38 H 1.09005 * 109.46991 * 59.99876 * 21 6 5 39 39 H 1.08998 * 109.47305 * 180.02562 * 21 6 5 40 40 H 1.08998 * 109.47555 * 299.99933 * 22 2 1 41 41 H 1.09003 * 109.47243 * 60.00606 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5699 -0.7218 1.2490 6 6 4.0794 -1.4435 -0.0002 7 1 3.7156 -2.4710 0.0001 8 7 5.5444 -1.4445 -0.0002 9 6 6.2176 -2.4012 -0.6696 10 8 5.6091 -3.2634 -1.2731 11 6 7.6945 -2.4019 -0.6700 12 6 8.3965 -3.3930 -1.3630 13 9 7.7260 -4.3539 -2.0355 14 6 9.7797 -3.3857 -1.3585 15 6 10.4657 -2.4052 -0.6669 16 6 9.7755 -1.4185 0.0164 17 6 10.5339 -0.3512 0.7627 18 8 10.2819 -0.4790 2.1635 19 14 12.3584 -0.5449 0.4397 20 6 8.3971 -1.4124 0.0213 21 6 3.5694 -0.7223 -1.2495 22 6 2.0399 -0.7214 -1.2491 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6765 -1.7489 1.2494 27 1 1.6766 -0.2074 2.1393 28 1 3.9332 -1.2360 2.1389 29 1 3.9336 0.3057 1.2488 30 1 6.0299 -0.7567 0.4816 31 1 10.3245 -4.1502 -1.8925 32 1 11.5457 -2.4066 -0.6629 33 1 10.2071 0.6316 0.4230 34 1 10.7394 0.1771 2.7069 35 1 12.8164 -1.8809 0.8985 36 1 12.6377 -0.3823 -1.0097 37 1 7.8613 -0.6441 0.5589 38 1 3.9332 0.3053 -1.2497 39 1 3.9320 -1.2367 -2.1394 40 1 1.6766 -1.7491 -1.2491 41 1 1.6766 -0.2076 -2.1392 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_12335834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:33:13 Heat of formation + Delta-G solvation = -96.982409 kcal Electronic energy + Delta-G solvation = -23838.516079 eV Core-core repulsion = 20212.664200 eV Total energy + Delta-G solvation = -3625.851879 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.16264 -41.60295 -40.33417 -39.24243 -37.44784 -35.88660 -33.39222 -32.57071 -31.80213 -31.61862 -27.18966 -26.62724 -25.37770 -23.79924 -23.30955 -22.04518 -21.65382 -20.74346 -19.29035 -18.57291 -18.25920 -18.01570 -17.10343 -17.03800 -16.52308 -16.19981 -16.01816 -15.57423 -15.38787 -15.23709 -15.21797 -14.79799 -14.57165 -14.28057 -14.13712 -13.97530 -13.70616 -13.45767 -13.25889 -13.17213 -12.71052 -12.58338 -12.46778 -12.13624 -11.99950 -11.95969 -11.72539 -11.35452 -11.20723 -11.06796 -10.56258 -10.35810 -10.17997 -9.92789 -4.91271 -0.67531 -0.19071 1.30368 1.46797 1.68823 1.85676 1.98557 2.32230 2.87370 3.22616 3.25322 3.41707 3.62166 3.66228 3.69531 3.83774 3.91944 4.04186 4.06172 4.14714 4.23077 4.35047 4.40674 4.47703 4.49961 4.53848 4.64064 4.64879 4.73922 4.75350 4.77038 4.93631 4.96666 4.99168 5.05758 5.09707 5.15645 5.19496 5.30375 5.37744 5.39493 5.41990 5.54118 6.30071 6.93888 6.97817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 H 0.081 0.919 4 C -0.111 4.111 5 C -0.118 4.118 6 C 0.145 3.855 7 H 0.062 0.938 8 N -0.703 5.703 9 C 0.555 3.445 10 O -0.570 6.570 11 C -0.184 4.184 12 C 0.134 3.866 13 F -0.133 7.133 14 C -0.154 4.154 15 C -0.074 4.074 16 C -0.100 4.100 17 C -0.072 4.072 18 O -0.561 6.561 19 Si 0.765 3.235 20 C -0.019 4.019 21 C -0.124 4.124 22 C -0.111 4.111 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.415 0.585 31 H 0.163 0.837 32 H 0.142 0.858 33 H 0.110 0.890 34 H 0.407 0.593 35 H -0.294 1.294 36 H -0.286 1.286 37 H 0.170 0.830 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.052 0.948 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.887 9.487 5.250 11.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 H 0.099 0.901 4 C -0.149 4.149 5 C -0.156 4.156 6 C 0.041 3.959 7 H 0.080 0.920 8 N -0.355 5.355 9 C 0.343 3.657 10 O -0.450 6.450 11 C -0.188 4.188 12 C 0.113 3.887 13 F -0.111 7.111 14 C -0.173 4.173 15 C -0.092 4.092 16 C -0.100 4.100 17 C -0.183 4.183 18 O -0.372 6.372 19 Si 0.671 3.329 20 C -0.038 4.038 21 C -0.163 4.163 22 C -0.149 4.149 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.254 0.746 31 H 0.181 0.819 32 H 0.159 0.841 33 H 0.127 0.873 34 H 0.259 0.741 35 H -0.222 1.222 36 H -0.213 1.213 37 H 0.188 0.812 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.654 7.923 4.205 9.686 hybrid contribution -0.427 -0.704 -0.564 0.998 sum 3.227 7.219 3.642 8.706 Atomic orbital electron populations 1.21834 0.94960 1.01737 1.02150 1.21156 0.95721 0.99891 0.94067 0.90111 1.21561 0.94029 1.00912 0.98398 1.21778 0.96565 1.01634 0.95605 1.21073 0.78058 1.00130 0.96617 0.91979 1.45852 1.07658 1.29706 1.52287 1.18226 0.86951 0.81603 0.78933 1.90837 1.70371 1.38898 1.44890 1.20164 0.93481 0.99651 1.05510 1.18099 0.90629 0.86759 0.93183 1.91562 1.80933 1.61217 1.77432 1.21277 0.91179 1.01977 1.02861 1.21212 1.00212 0.92735 0.95012 1.19750 0.93941 0.97190 0.99136 1.24705 1.10073 0.98891 0.84583 1.86437 1.75025 1.60555 1.15153 0.94137 0.75551 0.83031 0.80159 1.21281 0.93481 0.95654 0.93344 1.21850 0.96546 1.01016 0.96843 1.21543 0.93983 1.00652 0.98740 0.91901 0.92611 0.93193 0.92549 0.89962 0.90628 0.89218 0.74621 0.81940 0.84112 0.87261 0.74089 1.22210 1.21336 0.81220 0.90179 0.94151 0.92944 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.29 9.19 71.98 0.66 0.95 16 2 C -0.09 0.20 2.72 -10.79 -0.03 0.17 16 3 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 4 C -0.11 0.33 5.20 30.60 0.16 0.49 16 5 C -0.12 0.44 5.39 30.60 0.16 0.61 16 6 C 0.15 0.31 2.45 44.99 0.11 0.42 16 7 H 0.06 0.51 7.58 -2.39 -0.02 0.50 16 8 N -0.70 -1.17 5.03 -445.56 -2.24 -3.41 16 9 C 0.56 5.47 7.73 86.74 0.67 6.14 16 10 O -0.57 -11.04 15.00 -3.92 -0.06 -11.10 16 11 C -0.18 -1.25 5.88 -20.05 -0.12 -1.37 16 12 C 0.13 1.29 7.29 22.68 0.17 1.45 16 13 F -0.13 -2.09 15.55 44.97 0.70 -1.39 16 14 C -0.15 -0.65 10.01 22.28 0.22 -0.43 16 15 C -0.07 -0.13 8.66 22.31 0.19 0.06 16 16 C -0.10 0.03 5.38 -19.90 -0.11 -0.08 16 17 C -0.07 0.49 2.79 71.24 0.20 0.69 16 18 O -0.56 3.75 12.81 -148.98 -1.91 1.85 16 19 Si 0.77 -5.11 29.85 68.60 2.05 -3.06 16 20 C -0.02 0.00 9.17 22.52 0.21 0.21 16 21 C -0.12 -0.29 5.49 30.58 0.17 -0.12 16 22 C -0.11 -0.11 5.20 30.58 0.16 0.05 16 23 H 0.06 -0.19 8.14 -2.38 -0.02 -0.21 16 24 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 25 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 26 H 0.06 -0.03 8.14 -2.38 -0.02 -0.05 16 27 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 28 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 30 H 0.42 -2.28 6.64 -92.71 -0.62 -2.89 16 31 H 0.16 0.04 8.06 -2.91 -0.02 0.02 16 32 H 0.14 -0.07 4.84 -2.91 -0.01 -0.08 16 33 H 0.11 -1.33 7.96 -2.39 -0.02 -1.35 16 34 H 0.41 -6.83 8.74 -74.06 -0.65 -7.48 16 35 H -0.29 -0.29 7.04 99.48 0.70 0.41 16 36 H -0.29 0.28 7.11 99.48 0.71 0.99 16 37 H 0.17 -1.21 6.41 -2.91 -0.02 -1.23 16 38 H 0.08 -0.06 8.14 -2.38 -0.02 -0.08 16 39 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 Total: 0.00 -21.91 332.86 1.18 -20.73 By element: Atomic # 1 Polarization: -12.66 SS G_CDS: -0.18 Total: -12.84 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 2.83 Total: 9.24 kcal Atomic # 7 Polarization: -1.17 SS G_CDS: -2.24 Total: -3.41 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -1.97 Total: -9.26 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.70 Total: -1.39 kcal Atomic # 14 Polarization: -5.11 SS G_CDS: 2.05 Total: -3.06 kcal Total: -21.91 1.18 -20.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_12335834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.252 kcal (2) G-P(sol) polarization free energy of solvation -21.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds