Wall clock time and date at job start Tue Mar 9 2021 14:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47362 * 2 1 4 4 C 1.52997 * 109.47317 * 120.00732 * 2 1 3 5 5 C 1.53002 * 109.46817 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46972 * 299.99733 * 5 4 2 7 7 H 1.09000 * 109.47380 * 299.99696 * 6 5 4 8 8 N 1.46510 * 109.46858 * 180.02562 * 6 5 4 9 9 C 1.34773 * 119.99925 * 155.00046 * 8 6 5 10 10 O 1.21555 * 120.00076 * 359.97438 * 9 8 6 11 11 C 1.47845 * 120.00226 * 179.97438 * 9 8 6 12 12 C 1.39544 * 120.13745 * 359.72324 * 11 9 8 13 13 C 1.38072 * 119.83972 * 179.76352 * 12 11 9 14 14 Br 1.89103 * 119.93680 * 180.25403 * 13 12 11 15 15 C 1.38422 * 120.12951 * 0.51782 * 13 12 11 16 16 C 1.38368 * 120.27491 * 359.73610 * 15 13 12 17 17 C 1.50699 * 119.91656 * 180.02562 * 16 15 13 18 18 O 1.42902 * 109.47265 * 244.97807 * 17 16 15 19 19 Si 1.86301 * 109.47517 * 4.97676 * 17 16 15 20 20 C 1.37936 * 120.16046 * 359.97438 * 16 15 13 21 21 C 1.52997 * 109.47131 * 60.00459 * 6 5 4 22 22 C 1.52999 * 109.46991 * 299.99311 * 21 6 5 23 23 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46716 * 299.99359 * 1 2 3 25 25 H 1.09000 * 109.47486 * 59.99277 * 1 2 3 26 26 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 27 27 H 1.08996 * 109.46952 * 59.99813 * 4 2 1 28 28 H 1.08996 * 109.47407 * 60.00219 * 5 4 2 29 29 H 1.09000 * 109.46986 * 179.97438 * 5 4 2 30 30 H 0.96994 * 119.99768 * 334.99990 * 8 6 5 31 31 H 1.08001 * 120.08104 * 0.02562 * 12 11 9 32 32 H 1.07997 * 119.86115 * 179.76193 * 15 13 12 33 33 H 1.08998 * 109.47472 * 124.97922 * 17 16 15 34 34 H 0.96696 * 113.99593 * 59.99527 * 18 17 16 35 35 H 1.48496 * 110.00186 * 180.02562 * 19 17 16 36 36 H 1.48508 * 109.99595 * 301.32416 * 19 17 16 37 37 H 1.08006 * 120.06459 * 180.02562 * 20 16 15 38 38 H 1.09002 * 109.47153 * 179.97438 * 21 6 5 39 39 H 1.08993 * 109.47194 * 60.00154 * 21 6 5 40 40 H 1.08993 * 109.47839 * 300.00447 * 22 21 6 41 41 H 1.09000 * 109.47160 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5701 -0.7219 1.2487 6 6 4.0794 -1.4434 -0.0006 7 1 3.7158 -2.4709 -0.0005 8 7 5.5445 -1.4444 -0.0007 9 6 6.2177 -2.4008 -0.6703 10 8 5.6093 -3.2630 -1.2738 11 6 7.6961 -2.4016 -0.6709 12 6 8.3975 -1.4099 0.0161 13 6 9.7782 -1.4193 0.0155 14 35 10.7314 -0.0810 0.9515 15 6 10.4660 -2.4034 -0.6734 16 6 9.7757 -3.3860 -1.3607 17 6 10.5327 -4.4538 -2.1076 18 8 10.2792 -4.3262 -3.5082 19 14 12.3577 -4.2609 -1.7868 20 6 8.3964 -3.3912 -1.3630 21 6 3.5694 -0.7220 -1.2498 22 6 2.0394 -0.7215 -1.2494 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.6768 -0.2076 2.1392 27 1 1.6767 -1.7490 1.2490 28 1 3.9338 0.3056 1.2486 29 1 3.9335 -1.2354 2.1388 30 1 6.0299 -0.7566 0.4811 31 1 7.8617 -0.6394 0.5505 32 1 11.5460 -2.4043 -0.6742 33 1 10.2059 -5.4364 -1.7673 34 1 10.5458 -3.4743 -3.8800 35 1 13.1155 -5.3077 -2.5184 36 1 12.8093 -2.9132 -2.2173 37 1 7.8591 -4.1593 -1.8997 38 1 3.9326 -1.2357 -2.1398 39 1 3.9331 0.3055 -1.2499 40 1 1.6756 -1.7490 -1.2492 41 1 1.6760 -0.2080 -2.1395 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_12335870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:33:36 Heat of formation + Delta-G solvation = -50.235065 kcal Electronic energy + Delta-G solvation = -23160.026973 eV Core-core repulsion = 19665.838184 eV Total energy + Delta-G solvation = -3494.188789 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.062 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.71845 -40.43419 -39.22332 -37.82739 -35.87051 -33.64062 -33.47872 -31.78775 -31.74861 -30.47168 -27.32173 -26.94837 -25.00319 -23.76618 -22.84579 -22.23612 -21.52221 -20.71436 -19.20331 -18.10378 -17.69393 -17.41926 -16.66070 -16.44113 -16.26315 -15.84993 -15.57960 -15.23091 -15.21896 -15.05576 -14.96130 -14.37327 -14.26168 -14.06956 -13.68249 -13.31839 -13.23496 -13.14813 -13.05261 -12.56199 -12.29878 -12.12018 -11.97642 -11.94324 -11.83596 -11.73104 -11.44634 -11.32117 -11.18646 -11.07104 -10.70459 -10.39767 -10.11640 -9.92233 -4.97678 -0.53130 -0.17626 0.42041 1.20101 1.50646 1.54181 1.89210 1.96910 2.44779 3.23934 3.31294 3.43877 3.64369 3.71204 3.77314 3.86016 3.90199 3.95369 4.07891 4.16248 4.19180 4.28986 4.38590 4.42783 4.51770 4.53910 4.55277 4.74109 4.75976 4.79090 4.91172 4.94450 4.97991 5.05833 5.08389 5.12756 5.17366 5.21514 5.31299 5.36053 5.39579 5.43304 5.55406 6.35906 6.41377 7.02796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 H 0.078 0.922 4 C -0.111 4.111 5 C -0.119 4.119 6 C 0.146 3.854 7 H 0.066 0.934 8 N -0.707 5.707 9 C 0.559 3.441 10 O -0.573 6.573 11 C -0.136 4.136 12 C -0.043 4.043 13 C -0.099 4.099 14 Br -0.028 7.028 15 C -0.062 4.062 16 C -0.113 4.113 17 C -0.085 4.085 18 O -0.546 6.546 19 Si 0.765 3.235 20 C -0.029 4.029 21 C -0.125 4.125 22 C -0.111 4.111 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.414 0.586 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.130 0.870 34 H 0.388 0.612 35 H -0.297 1.297 36 H -0.272 1.272 37 H 0.130 0.870 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.163 4.312 5.115 6.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 H 0.096 0.904 4 C -0.149 4.149 5 C -0.157 4.157 6 C 0.042 3.958 7 H 0.085 0.915 8 N -0.359 5.359 9 C 0.347 3.653 10 O -0.453 6.453 11 C -0.140 4.140 12 C -0.064 4.064 13 C -0.178 4.178 14 Br 0.058 6.942 15 C -0.082 4.082 16 C -0.114 4.114 17 C -0.193 4.193 18 O -0.354 6.354 19 Si 0.668 3.332 20 C -0.049 4.049 21 C -0.163 4.163 22 C -0.149 4.149 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.252 0.748 31 H 0.179 0.821 32 H 0.173 0.827 33 H 0.147 0.853 34 H 0.237 0.763 35 H -0.225 1.225 36 H -0.198 1.198 37 H 0.148 0.852 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.613 3.780 4.801 6.320 hybrid contribution -0.549 0.276 -1.340 1.474 sum 1.064 4.057 3.462 5.438 Atomic orbital electron populations 1.21837 0.95017 1.01786 1.02056 1.21161 0.95688 0.99817 0.94257 0.90403 1.21552 0.94124 1.00971 0.98239 1.21780 0.96509 1.01558 0.95883 1.21049 0.78226 1.00225 0.96303 0.91532 1.45928 1.07662 1.29907 1.52388 1.18378 0.87291 0.81208 0.78472 1.90799 1.70412 1.39065 1.45070 1.19884 0.92461 0.98578 1.03079 1.21459 0.92373 0.96920 0.95620 1.21734 0.94653 0.98014 1.03431 1.96860 1.74270 1.49174 1.73913 1.21425 1.01074 0.91858 0.93804 1.20250 0.93601 0.97690 0.99874 1.25319 1.11512 1.00624 0.81851 1.86619 1.85477 1.41931 1.21352 0.94117 0.71176 0.77594 0.90278 1.21266 0.93662 0.96242 0.93721 1.21859 0.96452 1.00939 0.97074 1.21546 0.94087 1.00718 0.98558 0.93046 0.92032 0.92702 0.90185 0.92313 0.89591 0.90442 0.74813 0.82063 0.82651 0.85253 0.76278 1.22521 1.19763 0.85187 0.93862 0.90548 0.92694 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.37 9.19 71.98 0.66 1.03 16 2 C -0.09 0.26 2.72 -10.79 -0.03 0.23 16 3 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 4 C -0.11 0.43 5.20 30.59 0.16 0.59 16 5 C -0.12 0.60 5.39 30.59 0.16 0.76 16 6 C 0.15 0.01 2.45 44.99 0.11 0.12 16 7 H 0.07 0.36 7.58 -2.39 -0.02 0.34 16 8 N -0.71 0.71 5.03 -445.40 -2.24 -1.53 16 9 C 0.56 3.01 7.74 86.79 0.67 3.68 16 10 O -0.57 -8.17 16.01 -3.89 -0.06 -8.23 16 11 C -0.14 -0.24 5.87 -20.09 -0.12 -0.36 16 12 C -0.04 0.13 9.28 22.55 0.21 0.34 16 13 C -0.10 0.25 6.22 22.27 0.14 0.39 16 14 Br -0.03 0.08 33.69 -20.37 -0.69 -0.61 16 15 C -0.06 0.17 8.40 22.34 0.19 0.36 16 16 C -0.11 0.09 5.34 -19.91 -0.11 -0.01 16 17 C -0.08 0.12 2.80 71.24 0.20 0.32 16 18 O -0.55 -1.27 12.83 -148.98 -1.91 -3.18 16 19 Si 0.76 -2.66 29.87 68.60 2.05 -0.61 16 20 C -0.03 -0.09 9.23 22.53 0.21 0.12 16 21 C -0.12 -0.11 5.50 30.59 0.17 0.06 16 22 C -0.11 0.01 5.20 30.60 0.16 0.17 16 23 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 24 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 25 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 26 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 28 H 0.09 -0.67 8.14 -2.39 -0.02 -0.68 16 29 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H 0.41 -3.04 6.64 -92.71 -0.62 -3.66 16 31 H 0.16 -1.38 6.41 -2.91 -0.02 -1.40 16 32 H 0.16 -0.91 4.82 -2.91 -0.01 -0.93 16 33 H 0.13 -0.34 7.96 -2.39 -0.02 -0.36 16 34 H 0.39 -1.44 8.70 -74.06 -0.64 -2.08 16 35 H -0.30 -1.32 7.11 99.48 0.71 -0.61 16 36 H -0.27 0.22 7.01 99.48 0.70 0.91 16 37 H 0.13 0.83 7.65 -2.91 -0.02 0.81 16 38 H 0.04 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.05 0.11 8.14 -2.39 -0.02 0.10 16 41 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: 0.00 -15.40 349.54 -0.25 -15.65 By element: Atomic # 1 Polarization: -9.12 SS G_CDS: -0.18 Total: -9.30 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 2.78 Total: 7.80 kcal Atomic # 7 Polarization: 0.71 SS G_CDS: -2.24 Total: -1.53 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -1.97 Total: -11.41 kcal Atomic # 14 Polarization: -2.66 SS G_CDS: 2.05 Total: -0.61 kcal Atomic # 35 Polarization: 0.08 SS G_CDS: -0.69 Total: -0.61 kcal Total: -15.40 -0.25 -15.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_12335870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.585 kcal (2) G-P(sol) polarization free energy of solvation -15.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds