Wall clock time and date at job start Tue Mar 9 2021 14:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47114 * 2 1 4 4 C 1.53002 * 109.47219 * 120.00277 * 2 1 3 5 5 C 1.53000 * 109.46846 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47054 * 299.99693 * 5 4 2 7 7 H 1.09001 * 109.47158 * 300.00231 * 6 5 4 8 8 N 1.46499 * 109.46894 * 179.97438 * 6 5 4 9 9 C 1.34777 * 119.99790 * 154.99969 * 8 6 5 10 10 O 1.21572 * 119.99932 * 0.02562 * 9 8 6 11 11 C 1.47718 * 119.99940 * 180.02562 * 9 8 6 12 12 C 1.39708 * 120.02292 * 179.97438 * 11 9 8 13 13 C 1.37671 * 119.97266 * 179.72401 * 12 11 9 14 14 C 1.39494 * 120.02704 * 0.26179 * 13 12 11 15 15 C 1.48273 * 119.97874 * 180.02562 * 14 13 12 16 16 C 1.39405 * 120.12550 * 359.72071 * 15 14 13 17 17 C 1.38009 * 119.87037 * 179.79304 * 16 15 14 18 18 C 1.38328 * 120.12683 * 0.48413 * 17 16 15 19 19 C 1.50702 * 119.87237 * 179.72352 * 18 17 16 20 20 O 1.42901 * 109.47005 * 245.02420 * 19 18 17 21 21 Si 1.86297 * 109.46834 * 5.02283 * 19 18 17 22 22 C 1.38337 * 120.25848 * 359.74825 * 18 17 16 23 23 C 1.38005 * 120.12464 * 0.02562 * 22 18 17 24 24 C 1.39503 * 120.04813 * 359.97438 * 14 13 12 25 25 C 1.37667 * 120.02547 * 0.02562 * 24 14 13 26 26 C 1.53002 * 109.47044 * 60.00428 * 6 5 4 27 27 C 1.53000 * 109.46846 * 299.99699 * 26 6 5 28 28 H 1.09002 * 109.47121 * 299.99482 * 1 2 3 29 29 H 1.08994 * 109.47586 * 59.99730 * 1 2 3 30 30 H 1.09001 * 109.47114 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46880 * 59.99978 * 4 2 1 32 32 H 1.08998 * 109.46822 * 299.99966 * 4 2 1 33 33 H 1.09001 * 109.46605 * 179.97438 * 5 4 2 34 34 H 1.09001 * 109.47326 * 59.99821 * 5 4 2 35 35 H 0.97000 * 120.00435 * 335.00483 * 8 6 5 36 36 H 1.08002 * 120.01575 * 0.02562 * 12 11 9 37 37 H 1.08003 * 119.98193 * 180.22862 * 13 12 11 38 38 H 1.07994 * 120.06365 * 0.02562 * 16 15 14 39 39 H 1.07999 * 119.93248 * 180.23326 * 17 16 15 40 40 H 1.08993 * 109.47101 * 125.02393 * 19 18 17 41 41 H 0.96698 * 113.99699 * 59.99979 * 20 19 18 42 42 H 1.48509 * 110.00237 * 58.68294 * 21 19 18 43 43 H 1.48497 * 110.00006 * 180.02562 * 21 19 18 44 44 H 1.07996 * 119.93507 * 179.97438 * 22 18 17 45 45 H 1.08002 * 120.06057 * 179.97438 * 23 22 18 46 46 H 1.08000 * 119.98990 * 179.97438 * 24 14 13 47 47 H 1.07997 * 120.01352 * 180.02562 * 25 24 14 48 48 H 1.09002 * 109.47422 * 59.99352 * 26 6 5 49 49 H 1.08990 * 109.47094 * 180.02562 * 26 6 5 50 50 H 1.08996 * 109.47425 * 299.99720 * 27 26 6 51 51 H 1.09004 * 109.47038 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2494 6 6 4.0805 -1.4416 0.0001 7 1 3.7175 -2.4694 -0.0001 8 7 5.5455 -1.4405 0.0001 9 6 6.2201 -2.3961 -0.6694 10 8 5.6128 -3.2587 -1.2736 11 6 7.6972 -2.3953 -0.6690 12 6 8.3970 -3.3859 -1.3624 13 6 9.7737 -3.3809 -1.3660 14 6 10.4700 -2.3904 -0.6733 15 6 11.9527 -2.3857 -0.6784 16 6 12.6531 -3.3731 -1.3697 17 6 14.0331 -3.3612 -1.3745 18 6 14.7214 -2.3779 -0.6868 19 6 16.2284 -2.3740 -0.6908 20 8 16.7088 -2.6093 0.6344 21 14 16.8498 -3.7158 -1.8240 22 6 14.0317 -1.3983 0.0050 23 6 12.6517 -1.3974 0.0130 24 6 9.7723 -1.4036 0.0235 25 6 8.3956 -1.4066 0.0286 26 6 3.5705 -0.7203 -1.2491 27 6 2.0405 -0.7209 -1.2493 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6767 -1.7489 1.2491 32 1 1.6767 -0.2075 2.1392 33 1 3.9333 -1.2342 2.1397 34 1 3.9330 0.3071 1.2497 35 1 6.0300 -0.7520 0.4819 36 1 7.8582 -4.1526 -1.8994 37 1 10.3148 -4.1446 -1.9051 38 1 12.1168 -4.1436 -1.9036 39 1 14.5767 -4.1234 -1.9129 40 1 16.5883 -1.4068 -1.0413 41 1 16.4266 -3.4541 1.0108 42 1 16.3310 -3.5002 -3.1987 43 1 18.3347 -3.7229 -1.8363 44 1 14.5743 -0.6334 0.5404 45 1 12.1143 -0.6324 0.5537 46 1 10.3123 -0.6374 0.5599 47 1 7.8557 -0.6423 0.5677 48 1 3.9334 0.3076 -1.2488 49 1 3.9337 -1.2341 -2.1390 50 1 1.6775 -1.7486 -1.2496 51 1 1.6771 -0.2066 -2.1390 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_13158362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:34:04 Heat of formation + Delta-G solvation = -28.327586 kcal Electronic energy + Delta-G solvation = -29412.538623 eV Core-core repulsion = 25435.138016 eV Total energy + Delta-G solvation = -3977.400607 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.183 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.57368 -40.82993 -39.76147 -38.93526 -37.50627 -35.82009 -34.09644 -32.72477 -32.17631 -31.77719 -31.54860 -30.62139 -27.43004 -26.48031 -24.66278 -24.40493 -23.75302 -22.67386 -22.49842 -21.91841 -21.32692 -20.73916 -19.24040 -18.42950 -17.75923 -17.47703 -16.85948 -16.37790 -16.32522 -16.13826 -15.90946 -15.54514 -15.38326 -15.22503 -15.20280 -15.04322 -14.95866 -14.86145 -14.40073 -14.26635 -14.15819 -14.04672 -13.71951 -13.52967 -13.24675 -13.20283 -13.13082 -12.74440 -12.56914 -12.52322 -12.11888 -12.11191 -11.97855 -11.90997 -11.69601 -11.60511 -11.32244 -11.16097 -10.97991 -10.77013 -10.41746 -10.13952 -10.07135 -9.95841 -9.07986 -5.01386 -0.69641 0.34152 0.40261 0.49755 1.30289 1.62222 1.78230 1.95476 2.04653 2.60366 3.00730 3.39457 3.53618 3.59489 3.64981 3.68210 3.72036 3.78512 3.86993 3.92074 4.01040 4.04710 4.09377 4.17497 4.26399 4.28121 4.36930 4.38746 4.43035 4.47480 4.51998 4.55613 4.64228 4.67305 4.76305 4.79514 4.88391 4.91208 4.95196 4.98658 5.07707 5.08314 5.11013 5.14145 5.17305 5.20118 5.21823 5.26408 5.34104 5.39608 5.41318 5.45880 5.49849 5.55571 5.64936 5.79103 5.92981 6.45171 6.75517 7.12171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 H 0.078 0.922 4 C -0.111 4.111 5 C -0.119 4.119 6 C 0.146 3.854 7 H 0.064 0.936 8 N -0.709 5.709 9 C 0.555 3.445 10 O -0.582 6.582 11 C -0.153 4.153 12 C -0.071 4.071 13 C -0.122 4.122 14 C -0.022 4.022 15 C -0.060 4.060 16 C -0.107 4.107 17 C -0.118 4.118 18 C -0.120 4.120 19 C -0.073 4.073 20 O -0.555 6.555 21 Si 0.771 3.229 22 C -0.103 4.103 23 C -0.108 4.108 24 C -0.121 4.121 25 C -0.074 4.074 26 C -0.124 4.124 27 C -0.111 4.111 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.414 0.586 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.107 0.893 41 H 0.395 0.605 42 H -0.287 1.287 43 H -0.301 1.301 44 H 0.131 0.869 45 H 0.146 0.854 46 H 0.156 0.844 47 H 0.157 0.843 48 H 0.076 0.924 49 H 0.042 0.958 50 H 0.054 0.946 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.051 2.235 3.830 4.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 H 0.096 0.904 4 C -0.149 4.149 5 C -0.157 4.157 6 C 0.041 3.959 7 H 0.082 0.918 8 N -0.361 5.361 9 C 0.344 3.656 10 O -0.463 6.463 11 C -0.156 4.156 12 C -0.090 4.090 13 C -0.139 4.139 14 C -0.023 4.023 15 C -0.060 4.060 16 C -0.124 4.124 17 C -0.136 4.136 18 C -0.120 4.120 19 C -0.183 4.183 20 O -0.363 6.363 21 Si 0.678 3.322 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.138 4.138 25 C -0.093 4.093 26 C -0.163 4.163 27 C -0.149 4.149 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.252 0.748 36 H 0.145 0.855 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.124 0.876 41 H 0.245 0.755 42 H -0.214 1.214 43 H -0.229 1.229 44 H 0.149 0.851 45 H 0.163 0.837 46 H 0.173 0.827 47 H 0.174 0.826 48 H 0.094 0.906 49 H 0.061 0.939 50 H 0.073 0.927 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.321 2.030 2.628 3.336 hybrid contribution 0.016 0.689 -0.107 0.698 sum 0.338 2.719 2.521 3.723 Atomic orbital electron populations 1.21832 0.94965 1.01780 1.02071 1.21161 0.95716 0.99807 0.94237 0.90399 1.21552 0.94131 1.00939 0.98259 1.21773 0.96501 1.01520 0.95861 1.21022 0.78562 1.00031 0.96252 0.91818 1.45919 1.07447 1.30088 1.52607 1.18598 0.87872 0.80955 0.78182 1.90768 1.70858 1.39249 1.45395 1.20011 0.91944 0.99682 1.03934 1.21263 0.94346 0.97043 0.96338 1.21391 0.93302 0.99336 0.99920 1.19146 0.92005 0.94985 0.96130 1.18936 0.91416 0.96555 0.99122 1.21495 0.94085 0.98425 0.98439 1.21137 0.94502 0.98401 0.99510 1.20534 0.96192 0.96408 0.98856 1.25152 0.91898 1.08998 0.92298 1.86474 1.75805 1.45003 1.29025 0.93769 0.76743 0.85297 0.76382 1.21106 0.94007 0.98453 0.98494 1.21516 0.94133 0.98350 0.98546 1.21470 0.93887 0.98960 0.99487 1.21463 0.94502 0.96839 0.96480 1.21858 0.96441 1.00891 0.97094 1.21547 0.94087 1.00682 0.98569 0.92009 0.92677 0.93065 0.92376 0.90183 0.90584 0.89592 0.74785 0.85498 0.83302 0.83536 0.83627 0.87597 0.75474 1.21413 1.22919 0.85089 0.83659 0.82666 0.82553 0.90577 0.93948 0.92746 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.33 9.19 71.98 0.66 0.99 16 2 C -0.09 0.22 2.72 -10.79 -0.03 0.19 16 3 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 4 C -0.11 0.37 5.20 30.59 0.16 0.53 16 5 C -0.12 0.51 5.39 30.60 0.16 0.67 16 6 C 0.15 0.15 2.45 44.99 0.11 0.26 16 7 H 0.06 0.43 7.58 -2.39 -0.02 0.41 16 8 N -0.71 -0.07 5.03 -445.52 -2.24 -2.31 16 9 C 0.56 3.81 7.73 86.75 0.67 4.49 16 10 O -0.58 -9.12 16.00 -3.94 -0.06 -9.19 16 11 C -0.15 -0.49 5.88 -20.06 -0.12 -0.61 16 12 C -0.07 -0.29 9.58 22.49 0.22 -0.07 16 13 C -0.12 -0.06 9.41 22.44 0.21 0.15 16 14 C -0.02 0.01 5.88 -20.00 -0.12 -0.11 16 15 C -0.06 0.05 5.88 -20.05 -0.12 -0.07 16 16 C -0.11 0.22 9.43 22.50 0.21 0.44 16 17 C -0.12 0.32 8.65 22.24 0.19 0.51 16 18 C -0.12 0.13 5.36 -19.82 -0.11 0.03 16 19 C -0.07 0.09 2.80 71.24 0.20 0.29 16 20 O -0.55 0.27 12.83 -148.98 -1.91 -1.64 16 21 Si 0.77 -1.96 29.79 68.60 2.04 0.08 16 22 C -0.10 0.07 9.67 22.24 0.21 0.29 16 23 C -0.11 0.20 9.43 22.49 0.21 0.41 16 24 C -0.12 0.36 9.41 22.44 0.21 0.57 16 25 C -0.07 0.21 9.52 22.49 0.21 0.43 16 26 C -0.12 -0.20 5.49 30.59 0.17 -0.04 16 27 C -0.11 -0.04 5.21 30.60 0.16 0.12 16 28 H 0.06 -0.20 8.14 -2.39 -0.02 -0.21 16 29 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.08 -0.41 8.14 -2.39 -0.02 -0.42 16 33 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 34 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 35 H 0.41 -2.73 6.62 -92.71 -0.61 -3.35 16 36 H 0.13 0.73 7.64 -2.91 -0.02 0.71 16 37 H 0.15 -0.55 6.19 -2.91 -0.02 -0.56 16 38 H 0.15 -0.86 6.19 -2.91 -0.02 -0.88 16 39 H 0.15 -0.99 4.89 -2.91 -0.01 -1.01 16 40 H 0.11 0.00 7.96 -2.39 -0.02 -0.02 16 41 H 0.40 -3.34 8.70 -74.06 -0.64 -3.98 16 42 H -0.29 -0.69 7.11 99.48 0.71 0.01 16 43 H -0.30 -1.60 7.11 99.48 0.71 -0.89 16 44 H 0.13 -0.22 8.06 -2.91 -0.02 -0.25 16 45 H 0.15 -0.89 6.19 -2.91 -0.02 -0.91 16 46 H 0.16 -1.24 6.19 -2.91 -0.02 -1.26 16 47 H 0.16 -1.50 6.39 -2.91 -0.02 -1.52 16 48 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 49 H 0.04 0.30 8.14 -2.39 -0.02 0.28 16 50 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 51 H 0.07 0.01 8.14 -2.39 -0.02 0.00 16 Total: 0.00 -20.06 402.42 1.05 -19.01 By element: Atomic # 1 Polarization: -15.16 SS G_CDS: -0.26 Total: -15.42 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 3.49 Total: 9.47 kcal Atomic # 7 Polarization: -0.07 SS G_CDS: -2.24 Total: -2.31 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -1.97 Total: -10.83 kcal Atomic # 14 Polarization: -1.96 SS G_CDS: 2.04 Total: 0.08 kcal Total: -20.06 1.05 -19.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_13158362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.321 kcal (2) G-P(sol) polarization free energy of solvation -20.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds