Wall clock time and date at job start Tue Mar 9 2021 14:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47269 * 299.99806 * 5 4 2 7 7 H 1.08998 * 109.46876 * 300.00443 * 6 5 4 8 8 N 1.46500 * 109.47078 * 179.97438 * 6 5 4 9 9 C 1.34780 * 119.99474 * 154.99960 * 8 6 5 10 10 O 1.21623 * 120.00009 * 0.02562 * 9 8 6 11 11 C 1.47263 * 119.99744 * 180.02562 * 9 8 6 12 12 C 1.36775 * 126.94209 * 359.68636 * 11 9 8 13 13 N 1.34664 * 108.39214 * 179.87237 * 12 11 9 14 14 C 1.46496 * 124.84337 * 180.18199 * 13 12 11 15 15 C 1.36443 * 110.29975 * 0.40938 * 13 12 11 16 16 C 1.50699 * 125.57230 * 179.72649 * 15 13 12 17 17 O 1.42908 * 109.46816 * 30.00504 * 16 15 13 18 18 Si 1.86300 * 109.47051 * 149.99937 * 16 15 13 19 19 C 1.34488 * 108.85954 * 359.75017 * 15 13 12 20 20 C 1.53005 * 109.46542 * 59.99862 * 6 5 4 21 21 C 1.52997 * 109.47452 * 300.00026 * 20 6 5 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 26 26 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 27 27 H 1.09001 * 109.47289 * 60.00300 * 5 4 2 28 28 H 1.09004 * 109.47261 * 180.02562 * 5 4 2 29 29 H 0.96990 * 120.00235 * 335.00474 * 8 6 5 30 30 H 1.07996 * 125.79735 * 359.97438 * 12 11 9 31 31 H 1.09004 * 109.47313 * 270.25355 * 14 13 12 32 32 H 1.08998 * 109.47658 * 30.26330 * 14 13 12 33 33 H 1.09008 * 109.46782 * 150.26003 * 14 13 12 34 34 H 1.08991 * 109.47406 * 270.00367 * 16 15 13 35 35 H 0.96693 * 114.00025 * 59.99641 * 17 16 15 36 36 H 1.48507 * 109.99782 * 180.02562 * 18 16 15 37 37 H 1.48502 * 110.00290 * 301.31997 * 18 16 15 38 38 H 1.07996 * 126.83879 * 179.97438 * 19 15 13 39 39 H 1.09001 * 109.46812 * 60.00243 * 20 6 5 40 40 H 1.09002 * 109.46935 * 179.97438 * 20 6 5 41 41 H 1.09001 * 109.46832 * 300.00199 * 21 20 6 42 42 H 1.08993 * 109.47194 * 179.97438 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5700 -0.7218 1.2488 6 6 4.0795 -1.4434 -0.0005 7 1 3.7158 -2.4709 -0.0002 8 7 5.5445 -1.4434 -0.0010 9 6 6.2181 -2.3998 -0.6705 10 8 5.6097 -3.2625 -1.2745 11 6 7.6907 -2.4002 -0.6707 12 6 8.5130 -1.5014 -0.0488 13 7 9.7896 -1.8556 -0.2903 14 6 10.9658 -1.1403 0.2105 15 6 9.8309 -2.9730 -1.0723 16 6 11.0827 -3.6600 -1.5541 17 8 12.1284 -3.4692 -0.5990 18 14 10.7521 -5.4822 -1.7570 19 6 8.5720 -3.3608 -1.3433 20 6 3.5694 -0.7221 -1.2497 21 6 2.0395 -0.7215 -1.2494 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.6767 -0.2074 2.1392 26 1 1.6768 -1.7489 1.2491 27 1 3.9338 0.3057 1.2487 28 1 3.9334 -1.2361 2.1386 29 1 6.0297 -0.7553 0.4804 30 1 8.1929 -0.6530 0.5378 31 1 11.2578 -0.3736 -0.5072 32 1 10.7270 -0.6720 1.1654 33 1 11.7880 -1.8430 0.3461 34 1 11.3839 -3.2365 -2.5121 35 1 11.9288 -3.8224 0.2787 36 1 11.9792 -6.1713 -2.2312 37 1 10.3099 -6.0653 -0.4648 38 1 8.2699 -4.2101 -1.9380 39 1 3.9332 0.3054 -1.2498 40 1 3.9328 -1.2359 -2.1397 41 1 1.6758 -1.7491 -1.2492 42 1 1.6761 -0.2073 -2.1390 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_13287730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:34:22 Heat of formation + Delta-G solvation = -31.096177 kcal Electronic energy + Delta-G solvation = -22036.300546 eV Core-core repulsion = 18790.022294 eV Total energy + Delta-G solvation = -3246.278252 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.46638 -40.77390 -39.10596 -37.95233 -35.61172 -33.78181 -32.40998 -31.73299 -31.05510 -27.79829 -26.85325 -25.99718 -23.84878 -23.55870 -21.99765 -21.19686 -20.78440 -20.34831 -19.02444 -17.55320 -17.12436 -16.96846 -16.77377 -16.05902 -15.74714 -15.46858 -15.35363 -15.17881 -15.14892 -14.94583 -14.54083 -14.19301 -14.10291 -13.67265 -13.43390 -13.22538 -13.19367 -13.11497 -13.01285 -12.49827 -12.36748 -12.07012 -11.99065 -11.89154 -11.65184 -11.27717 -11.10005 -10.91254 -10.87145 -10.06557 -9.55894 -9.21333 -4.90007 0.74342 1.02544 1.43994 1.62341 1.80203 2.05792 2.29919 2.57416 3.15111 3.55631 3.68490 3.76290 3.87243 3.93241 3.97519 4.13555 4.21769 4.31171 4.42751 4.44924 4.45931 4.48988 4.51307 4.56651 4.60281 4.77144 4.81156 4.83906 4.93298 4.97105 4.99355 5.04450 5.12657 5.17761 5.20987 5.27365 5.37376 5.43335 5.55548 5.59206 5.66976 5.96156 6.22772 6.31428 6.67859 7.37451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 H 0.078 0.922 4 C -0.111 4.111 5 C -0.117 4.117 6 C 0.148 3.852 7 H 0.060 0.940 8 N -0.714 5.714 9 C 0.587 3.413 10 O -0.593 6.593 11 C -0.262 4.262 12 C 0.070 3.930 13 N -0.427 5.427 14 C 0.046 3.954 15 C -0.024 4.024 16 C -0.043 4.043 17 O -0.538 6.538 18 Si 0.772 3.228 19 C -0.156 4.156 20 C -0.123 4.123 21 C -0.111 4.111 22 H 0.061 0.939 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.412 0.588 30 H 0.206 0.794 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.133 0.867 35 H 0.388 0.612 36 H -0.287 1.287 37 H -0.294 1.294 38 H 0.154 0.846 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.053 0.947 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.879 5.770 3.583 7.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 H 0.096 0.904 4 C -0.149 4.149 5 C -0.155 4.155 6 C 0.043 3.957 7 H 0.078 0.922 8 N -0.365 5.365 9 C 0.377 3.623 10 O -0.475 6.475 11 C -0.272 4.272 12 C -0.067 4.067 13 N -0.101 5.101 14 C -0.094 4.094 15 C -0.133 4.133 16 C -0.152 4.152 17 O -0.346 6.346 18 Si 0.676 3.324 19 C -0.180 4.180 20 C -0.162 4.162 21 C -0.149 4.149 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.248 0.752 30 H 0.223 0.777 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.150 0.850 35 H 0.238 0.762 36 H -0.214 1.214 37 H -0.221 1.221 38 H 0.171 0.829 39 H 0.093 0.907 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.280 4.807 3.032 6.124 hybrid contribution 0.440 0.361 1.007 1.157 sum 2.720 5.168 4.039 7.101 Atomic orbital electron populations 1.21838 0.95006 1.01765 1.02060 1.21153 0.95675 0.99789 0.94243 0.90385 1.21554 0.94264 1.00874 0.98236 1.21757 0.96385 1.01446 0.95927 1.20941 0.78977 0.99721 0.96012 0.92196 1.45783 1.07064 1.30311 1.53352 1.17711 0.86618 0.80449 0.77518 1.90744 1.70823 1.39765 1.46178 1.20360 0.91578 1.03181 1.12093 1.22404 0.82519 1.00306 1.01495 1.43729 1.07046 1.21099 1.38181 1.22738 0.86725 0.98662 1.01234 1.20809 0.96391 0.92919 1.03156 1.24727 0.84192 1.11301 0.95025 1.86535 1.42232 1.81232 1.24642 0.93299 0.82750 0.71211 0.85160 1.21814 0.90469 1.01627 1.04089 1.21847 0.96271 1.00817 0.97236 1.21550 0.94237 1.00616 0.98517 0.92027 0.93092 0.92642 0.90253 0.92482 0.89640 0.90781 0.75180 0.77685 0.90275 0.87700 0.87104 0.84983 0.76223 1.21390 1.22100 0.82861 0.90673 0.94019 0.92828 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.24 9.19 71.98 0.66 0.91 16 2 C -0.09 0.16 2.72 -10.79 -0.03 0.13 16 3 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 4 C -0.11 0.28 5.20 30.59 0.16 0.44 16 5 C -0.12 0.40 5.39 30.60 0.16 0.56 16 6 C 0.15 0.33 2.45 45.00 0.11 0.44 16 7 H 0.06 0.50 7.58 -2.39 -0.02 0.48 16 8 N -0.71 -0.99 5.07 -445.93 -2.26 -3.25 16 9 C 0.59 5.29 7.77 86.62 0.67 5.96 16 10 O -0.59 -10.91 16.63 -4.10 -0.07 -10.97 16 11 C -0.26 -1.35 6.29 -19.04 -0.12 -1.47 16 12 C 0.07 -0.15 10.83 83.92 0.91 0.75 16 13 N -0.43 0.88 3.09 -533.23 -1.65 -0.77 16 14 C 0.05 -0.36 10.71 127.77 1.37 1.01 16 15 C -0.02 -0.02 6.14 40.98 0.25 0.23 16 16 C -0.04 0.07 2.98 71.24 0.21 0.29 16 17 O -0.54 1.21 9.95 -148.98 -1.48 -0.28 16 18 Si 0.77 -0.34 31.12 68.60 2.13 1.79 16 19 C -0.16 -0.81 9.49 23.62 0.22 -0.59 16 20 C -0.12 -0.33 5.49 30.60 0.17 -0.17 16 21 C -0.11 -0.14 5.20 30.60 0.16 0.02 16 22 H 0.06 -0.17 8.14 -2.39 -0.02 -0.18 16 23 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 24 H 0.05 -0.08 8.14 -2.38 -0.02 -0.10 16 25 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 26 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 28 H 0.07 -0.29 8.14 -2.38 -0.02 -0.30 16 29 H 0.41 -2.40 7.54 -92.72 -0.70 -3.10 16 30 H 0.21 -2.21 7.45 -2.91 -0.02 -2.23 16 31 H 0.08 -0.63 8.14 -2.38 -0.02 -0.65 16 32 H 0.10 -1.28 8.13 -2.39 -0.02 -1.30 16 33 H 0.11 -0.84 4.93 -2.38 -0.01 -0.86 16 34 H 0.13 -0.46 7.96 -2.39 -0.02 -0.48 16 35 H 0.39 -2.70 8.38 -74.06 -0.62 -3.32 16 36 H -0.29 -1.48 7.11 99.48 0.71 -0.78 16 37 H -0.29 -1.71 7.11 99.48 0.71 -1.01 16 38 H 0.15 0.70 6.89 -2.91 -0.02 0.68 16 39 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 Total: 0.00 -20.18 334.66 1.32 -18.86 By element: Atomic # 1 Polarization: -13.62 SS G_CDS: -0.27 Total: -13.89 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 4.91 Total: 8.51 kcal Atomic # 7 Polarization: -0.11 SS G_CDS: -3.91 Total: -4.01 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -1.55 Total: -11.25 kcal Atomic # 14 Polarization: -0.34 SS G_CDS: 2.13 Total: 1.79 kcal Total: -20.18 1.32 -18.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_13287730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.237 kcal (2) G-P(sol) polarization free energy of solvation -20.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds