Wall clock time and date at job start Tue Mar 9 2021 14:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38979 * 119.94945 * 2 1 4 4 O 1.35710 * 119.91648 * 359.97438 * 3 2 1 5 5 C 1.39018 * 120.17280 * 179.97438 * 3 2 1 6 6 C 1.50696 * 119.95722 * 180.02562 * 5 3 2 7 7 O 1.42899 * 109.46960 * 285.00007 * 6 5 3 8 8 Si 1.86303 * 109.47364 * 164.99859 * 6 5 3 9 9 C 1.37683 * 120.08873 * 359.97438 * 5 3 2 10 10 C 1.39752 * 119.91242 * 0.02562 * 9 5 3 11 11 C 1.47606 * 120.09110 * 180.02562 * 10 9 5 12 12 O 1.21579 * 119.99895 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00258 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00070 * 179.97438 * 13 11 10 15 15 H 1.08999 * 109.47285 * 34.99384 * 14 13 11 16 16 C 1.52999 * 109.47033 * 154.99863 * 14 13 11 17 17 C 1.53002 * 109.46913 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47302 * 299.99616 * 17 16 14 19 19 H 1.08999 * 109.47025 * 300.00137 * 18 17 16 20 20 C 1.52993 * 109.47321 * 179.97438 * 18 17 16 21 21 C 1.53000 * 109.46618 * 59.99814 * 18 17 16 22 22 C 1.52997 * 109.47731 * 300.00252 * 21 18 17 23 23 C 1.37718 * 119.95887 * 179.72127 * 2 1 3 24 24 H 1.08999 * 109.47015 * 90.00363 * 1 2 3 25 25 H 1.09000 * 109.46646 * 209.99515 * 1 2 3 26 26 H 1.09000 * 109.47248 * 330.00233 * 1 2 3 27 27 H 0.96696 * 113.99724 * 90.00154 * 4 3 2 28 28 H 1.08999 * 109.47111 * 44.99778 * 6 5 3 29 29 H 0.96698 * 114.00003 * 299.99290 * 7 6 5 30 30 H 1.48500 * 110.00068 * 180.02562 * 8 6 5 31 31 H 1.48501 * 109.99991 * 301.31804 * 8 6 5 32 32 H 1.08006 * 120.04686 * 180.02562 * 9 5 3 33 33 H 0.97007 * 119.99444 * 359.97438 * 13 11 10 34 34 H 1.08997 * 109.46888 * 299.99404 * 16 14 13 35 35 H 1.08999 * 109.47476 * 59.99639 * 16 14 13 36 36 H 1.09004 * 109.47087 * 60.00108 * 17 16 14 37 37 H 1.09004 * 109.46887 * 179.97438 * 17 16 14 38 38 H 1.09004 * 109.46719 * 60.00178 * 20 18 17 39 39 H 1.08999 * 109.47469 * 179.97438 * 20 18 17 40 40 H 1.09004 * 109.47235 * 300.00594 * 20 18 17 41 41 H 1.08999 * 109.47158 * 60.00405 * 21 18 17 42 42 H 1.08999 * 109.46963 * 179.97438 * 21 18 17 43 43 H 1.08999 * 109.46924 * 300.00296 * 22 21 18 44 44 H 1.08998 * 109.47563 * 180.02562 * 22 21 18 45 45 H 1.08004 * 120.04171 * 0.02775 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2009 1.2042 0.0000 4 8 1.5196 2.3779 -0.0005 5 6 3.5911 1.2096 0.0005 6 6 4.3385 2.5182 0.0011 7 8 4.2724 3.1050 -1.3001 8 14 6.1196 2.2159 0.4564 9 6 4.2860 0.0210 0.0016 10 6 3.5920 -1.1920 0.0016 11 6 4.3330 -2.4686 0.0033 12 8 5.5487 -2.4657 0.0043 13 7 3.6618 -3.6374 0.0028 14 6 4.3973 -4.9043 0.0039 15 1 5.3071 -4.7958 0.5943 16 6 3.5220 -6.0016 0.6128 17 6 4.2899 -7.3249 0.6134 18 6 4.6558 -7.7030 -0.8234 19 1 3.7458 -7.8112 -1.4135 20 6 5.4242 -9.0259 -0.8227 21 6 5.5310 -6.6056 -1.4322 22 6 4.7631 -5.2823 -1.4328 23 6 2.1948 -1.1932 0.0058 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3632 -0.8901 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.3219 2.7182 0.8827 28 1 3.8874 3.1939 0.7277 29 1 4.6565 2.5574 -1.9985 30 1 6.8674 3.4989 0.4611 31 1 6.2004 1.5766 1.7943 32 1 5.3660 0.0260 0.0024 33 1 2.6918 -3.6396 0.0017 34 1 3.2611 -5.7321 1.6362 35 1 2.6122 -6.1101 0.0224 36 1 5.1999 -7.2167 1.2036 37 1 3.6665 -8.1066 1.0476 38 1 4.8009 -9.8078 -0.3887 39 1 5.6844 -9.2955 -1.8463 40 1 6.3342 -8.9173 -0.2326 41 1 6.4410 -6.4974 -0.8421 42 1 5.7920 -6.8751 -2.4556 43 1 3.8531 -5.3905 -2.0229 44 1 5.3865 -4.5006 -1.8670 45 1 1.6548 -2.1285 0.0099 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_13287732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:34:24 Heat of formation + Delta-G solvation = -104.705960 kcal Electronic energy + Delta-G solvation = -25545.567865 eV Core-core repulsion = 21914.615232 eV Total energy + Delta-G solvation = -3630.952633 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.166 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.78598 -40.75525 -39.31058 -37.86609 -37.48990 -35.79314 -33.99928 -32.72776 -31.74260 -31.19770 -28.01122 -27.23384 -26.68609 -24.60811 -23.71481 -22.33582 -21.91245 -21.47893 -20.66931 -19.58986 -18.76848 -18.09856 -17.55004 -16.88543 -16.51609 -16.27673 -16.08759 -15.66502 -15.57721 -15.19182 -15.18443 -15.02983 -14.73773 -14.30908 -14.27635 -14.16232 -13.94655 -13.63144 -13.29364 -13.20128 -13.12262 -12.92116 -12.82303 -12.51317 -12.37273 -12.21831 -12.07470 -11.91415 -11.67932 -11.61360 -11.29419 -11.13153 -10.96016 -10.47745 -10.17433 -9.97329 -9.66306 -5.06313 -0.40579 0.06326 1.19857 1.52656 1.62960 1.83484 2.03470 2.56777 3.09425 3.36233 3.53317 3.56707 3.68356 3.73535 3.75338 3.94060 4.01219 4.11679 4.15980 4.20452 4.32380 4.39500 4.44684 4.47654 4.55580 4.58518 4.60842 4.70378 4.78568 4.80097 4.82142 4.97037 5.00318 5.03271 5.07166 5.12134 5.16663 5.18361 5.20712 5.25147 5.31029 5.35672 5.42641 5.47431 5.57348 5.59662 6.45818 6.68144 6.70064 7.12807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C 0.153 3.847 4 O -0.495 6.495 5 C -0.159 4.159 6 C -0.051 4.051 7 O -0.548 6.548 8 Si 0.741 3.259 9 C -0.056 4.056 10 C -0.150 4.150 11 C 0.559 3.441 12 O -0.574 6.574 13 N -0.709 5.709 14 C 0.146 3.854 15 H 0.066 0.934 16 C -0.119 4.119 17 C -0.111 4.111 18 C -0.091 4.091 19 H 0.077 0.923 20 C -0.150 4.150 21 C -0.111 4.111 22 C -0.124 4.124 23 C -0.055 4.055 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.409 0.591 28 H 0.113 0.887 29 H 0.392 0.608 30 H -0.287 1.287 31 H -0.290 1.290 32 H 0.141 0.859 33 H 0.414 0.586 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.046 0.954 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.696 -4.703 0.382 7.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.122 4.122 3 C 0.107 3.893 4 O -0.309 6.309 5 C -0.160 4.160 6 C -0.162 4.162 7 O -0.355 6.355 8 Si 0.648 3.352 9 C -0.075 4.075 10 C -0.153 4.153 11 C 0.347 3.653 12 O -0.454 6.454 13 N -0.360 5.360 14 C 0.042 3.958 15 H 0.084 0.916 16 C -0.157 4.157 17 C -0.149 4.149 18 C -0.109 4.109 19 H 0.096 0.904 20 C -0.207 4.207 21 C -0.149 4.149 22 C -0.163 4.163 23 C -0.074 4.074 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.269 0.731 28 H 0.131 0.869 29 H 0.241 0.759 30 H -0.214 1.214 31 H -0.217 1.217 32 H 0.158 0.842 33 H 0.252 0.748 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.065 0.935 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.466 -4.130 0.690 6.122 hybrid contribution -0.535 0.451 0.709 0.996 sum -5.001 -3.679 1.398 6.364 Atomic orbital electron populations 1.20746 0.88275 1.04178 1.03367 1.20444 0.98325 0.91749 1.01660 1.18493 0.88800 0.85895 0.96080 1.84769 1.75517 1.35700 1.34871 1.20633 0.94255 0.95701 1.05384 1.24817 1.09044 0.92958 0.89416 1.86507 1.84828 1.47620 1.16561 0.93784 0.76304 0.80799 0.84346 1.20999 1.00002 0.90660 0.95823 1.19841 0.94340 0.92724 1.08436 1.18364 0.86859 0.84508 0.75580 1.90784 1.15057 1.88073 1.51523 1.45903 1.11041 1.04843 1.74224 1.21028 0.95623 0.82369 0.96814 0.91583 1.21772 0.98744 0.93486 1.01698 1.21553 1.00348 0.96534 0.96487 1.21158 0.98844 0.94429 0.96493 0.90425 1.21839 1.00251 0.96793 1.01836 1.21545 0.98281 0.93841 1.01245 1.21856 1.00856 0.97273 0.96288 1.21367 0.91726 0.98989 0.95270 0.90598 0.89369 0.90838 0.73082 0.86942 0.75863 1.21373 1.21710 0.84197 0.74817 0.90635 0.89602 0.92383 0.90359 0.92141 0.92670 0.93064 0.92697 0.91506 0.90591 0.93522 0.81987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.67 9.79 71.24 0.70 1.36 16 2 C -0.12 0.26 5.89 -19.81 -0.12 0.14 16 3 C 0.15 0.14 6.66 22.63 0.15 0.29 16 4 O -0.50 -0.05 11.84 -90.31 -1.07 -1.12 16 5 C -0.16 -0.31 5.27 -19.81 -0.10 -0.42 16 6 C -0.05 -0.10 2.37 71.23 0.17 0.07 16 7 O -0.55 -1.89 12.88 -148.98 -1.92 -3.81 16 8 Si 0.74 1.81 29.91 68.60 2.05 3.86 16 9 C -0.06 -0.17 8.20 22.50 0.18 0.01 16 10 C -0.15 -0.26 5.88 -20.08 -0.12 -0.38 16 11 C 0.56 2.58 7.73 86.72 0.67 3.25 16 12 O -0.57 -7.28 16.00 -3.96 -0.06 -7.35 16 13 N -0.71 1.29 5.03 -445.65 -2.24 -0.95 16 14 C 0.15 -0.10 2.45 44.99 0.11 0.01 16 15 H 0.07 0.31 7.58 -2.39 -0.02 0.29 16 16 C -0.12 0.65 5.39 30.59 0.16 0.82 16 17 C -0.11 0.47 5.20 30.60 0.16 0.63 16 18 C -0.09 0.30 2.72 -10.79 -0.03 0.28 16 19 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 20 C -0.15 0.42 9.19 71.98 0.66 1.08 16 21 C -0.11 0.10 5.20 30.59 0.16 0.26 16 22 C -0.12 0.01 5.49 30.59 0.17 0.18 16 23 C -0.06 0.19 9.18 22.50 0.21 0.40 16 24 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 25 H 0.09 -0.85 8.08 -2.39 -0.02 -0.87 16 26 H 0.07 -0.46 7.52 -2.39 -0.02 -0.47 16 27 H 0.41 -3.45 9.06 -74.06 -0.67 -4.12 16 28 H 0.11 0.15 7.82 -2.39 -0.02 0.13 16 29 H 0.39 -1.48 8.70 -74.06 -0.64 -2.12 16 30 H -0.29 -2.42 7.11 99.48 0.71 -1.71 16 31 H -0.29 -2.39 7.11 99.48 0.71 -1.68 16 32 H 0.14 0.44 4.70 -2.91 -0.01 0.42 16 33 H 0.41 -3.45 6.62 -92.70 -0.61 -4.07 16 34 H 0.07 -0.45 8.14 -2.39 -0.02 -0.47 16 35 H 0.09 -0.72 8.14 -2.39 -0.02 -0.73 16 36 H 0.06 -0.13 8.14 -2.38 -0.02 -0.15 16 37 H 0.08 -0.44 8.14 -2.38 -0.02 -0.46 16 38 H 0.06 -0.22 8.14 -2.38 -0.02 -0.24 16 39 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 40 H 0.05 -0.09 8.14 -2.38 -0.02 -0.11 16 41 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 43 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.16 -1.69 6.39 -2.91 -0.02 -1.71 16 Total: 0.00 -19.44 358.81 -0.98 -20.42 By element: Atomic # 1 Polarization: -18.16 SS G_CDS: -0.87 Total: -19.04 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 3.13 Total: 7.99 kcal Atomic # 7 Polarization: 1.29 SS G_CDS: -2.24 Total: -0.95 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -3.05 Total: -12.28 kcal Atomic # 14 Polarization: 1.81 SS G_CDS: 2.05 Total: 3.86 kcal Total: -19.44 -0.98 -20.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_13287732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.286 kcal (2) G-P(sol) polarization free energy of solvation -19.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds