Wall clock time and date at job start Tue Mar 9 2021 14:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47136 * 2 1 4 4 C 1.53001 * 109.46838 * 119.99864 * 2 1 3 5 5 C 1.53009 * 109.47049 * 180.02562 * 4 2 1 6 6 C 1.52991 * 109.47048 * 299.99995 * 5 4 2 7 7 H 1.09001 * 109.47415 * 299.99695 * 6 5 4 8 8 N 1.46505 * 109.47044 * 179.97438 * 6 5 4 9 9 C 1.34774 * 119.99856 * 155.00094 * 8 6 5 10 10 O 1.21552 * 120.00209 * 359.97438 * 9 8 6 11 11 C 1.47846 * 119.99687 * 180.02562 * 9 8 6 12 12 C 1.39516 * 120.56201 * 359.97438 * 11 9 8 13 13 N 1.31692 * 120.56915 * 179.97438 * 12 11 9 14 14 C 1.31919 * 121.87956 * 0.02562 * 13 12 11 15 15 C 1.38357 * 121.07949 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.34736 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.46878 * 119.99670 * 16 15 14 18 18 Si 1.86303 * 109.47233 * 359.97438 * 16 15 14 19 19 C 1.38353 * 119.30400 * 0.24682 * 15 14 13 20 20 C 1.53001 * 109.47191 * 60.00092 * 6 5 4 21 21 C 1.52998 * 109.46996 * 299.99581 * 20 6 5 22 22 H 1.08996 * 109.47395 * 300.00287 * 1 2 3 23 23 H 1.09003 * 109.47043 * 60.00303 * 1 2 3 24 24 H 1.09001 * 109.46698 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47767 * 60.00442 * 4 2 1 26 26 H 1.09003 * 109.47364 * 299.99990 * 4 2 1 27 27 H 1.09003 * 109.46730 * 179.97438 * 5 4 2 28 28 H 1.09001 * 109.46764 * 60.00089 * 5 4 2 29 29 H 0.96999 * 119.99753 * 334.99787 * 8 6 5 30 30 H 1.08007 * 119.71446 * 0.02562 * 12 11 9 31 31 H 1.08004 * 119.46137 * 179.97438 * 14 13 12 32 32 H 1.09002 * 109.47060 * 239.99800 * 16 15 14 33 33 H 0.96700 * 114.00234 * 299.99722 * 17 16 15 34 34 H 1.48502 * 109.99951 * 180.02562 * 18 16 15 35 35 H 1.48507 * 109.99767 * 301.31682 * 18 16 15 36 36 H 1.07990 * 120.85674 * 179.70455 * 19 15 14 37 37 H 1.08997 * 109.47044 * 60.00237 * 20 6 5 38 38 H 1.08996 * 109.47004 * 180.02562 * 20 6 5 39 39 H 1.08997 * 109.47760 * 300.00218 * 21 20 6 40 40 H 1.09003 * 109.47201 * 180.02562 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2497 6 6 4.0805 -1.4416 0.0005 7 1 3.7176 -2.4694 0.0003 8 7 5.5455 -1.4405 0.0006 9 6 6.2201 -2.3962 -0.6689 10 8 5.6130 -3.2592 -1.2723 11 6 7.6985 -2.3954 -0.6683 12 6 8.4072 -1.4108 0.0208 13 7 9.7241 -1.4103 0.0217 14 6 10.4217 -2.3276 -0.6202 15 6 9.7936 -3.3371 -1.3280 16 6 10.6067 -4.3763 -2.0559 17 8 10.2962 -5.6719 -1.5392 18 14 12.4207 -4.0283 -1.8122 19 6 8.4112 -3.3791 -1.3650 20 6 3.5706 -0.7203 -1.2488 21 6 2.0406 -0.7210 -1.2492 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6767 -1.7489 1.2494 26 1 1.6766 -0.2074 2.1393 27 1 3.9332 -1.2341 2.1399 28 1 3.9329 0.3071 1.2499 29 1 6.0300 -0.7520 0.4824 30 1 7.8711 -0.6429 0.5587 31 1 11.5007 -2.2896 -0.5936 32 1 10.3705 -4.3430 -3.1195 33 1 10.4817 -5.7739 -0.5957 34 1 13.2334 -5.0459 -2.5257 35 1 12.7497 -2.6709 -2.3170 36 1 7.8951 -4.1529 -1.9136 37 1 3.9336 0.3074 -1.2486 38 1 3.9339 -1.2342 -2.1387 39 1 1.6776 -1.7487 -1.2494 40 1 1.6773 -0.2075 -2.1394 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_13287814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:34:30 Heat of formation + Delta-G solvation = -45.671355 kcal Electronic energy + Delta-G solvation = -21363.929395 eV Core-core repulsion = 18144.330594 eV Total energy + Delta-G solvation = -3219.598800 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.98634 -40.75415 -39.27024 -37.94782 -35.87622 -33.78605 -33.49456 -31.78955 -31.75761 -27.39645 -27.21270 -25.34053 -23.91290 -23.71244 -22.29636 -21.62804 -20.75694 -19.23585 -18.25671 -17.96834 -17.70890 -16.91705 -16.56661 -16.17813 -16.04215 -15.57754 -15.23862 -15.21521 -15.04430 -14.65719 -14.43091 -14.28672 -14.16821 -13.70952 -13.47095 -13.23803 -13.15125 -12.74285 -12.56143 -12.16562 -12.11863 -11.95049 -11.77262 -11.41317 -11.24677 -11.14676 -11.07778 -10.63436 -10.59696 -10.33667 -10.12119 -5.02898 -0.59843 -0.05747 1.21810 1.60070 1.63635 1.89829 1.97769 2.60958 3.08464 3.36091 3.42178 3.61895 3.65022 3.69874 3.71092 3.72824 3.91543 4.06961 4.09365 4.16510 4.25278 4.38077 4.42557 4.45004 4.52006 4.55384 4.75283 4.78198 4.81252 4.88869 4.95408 4.98957 5.07955 5.12102 5.17458 5.21438 5.28600 5.33075 5.39545 5.42366 5.55419 6.34922 6.61895 6.69162 7.02022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 H 0.078 0.922 4 C -0.111 4.111 5 C -0.119 4.119 6 C 0.146 3.854 7 H 0.066 0.934 8 N -0.705 5.705 9 C 0.563 3.437 10 O -0.576 6.576 11 C -0.197 4.197 12 C 0.147 3.853 13 N -0.492 5.492 14 C 0.130 3.870 15 C -0.176 4.176 16 C -0.075 4.075 17 O -0.555 6.555 18 Si 0.786 3.214 19 C -0.003 4.003 20 C -0.125 4.125 21 C -0.111 4.111 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.415 0.585 30 H 0.192 0.808 31 H 0.185 0.815 32 H 0.111 0.889 33 H 0.397 0.603 34 H -0.295 1.295 35 H -0.275 1.275 36 H 0.134 0.866 37 H 0.077 0.923 38 H 0.042 0.958 39 H 0.054 0.946 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.327 4.159 5.279 6.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.149 4.149 5 C -0.157 4.157 6 C 0.042 3.958 7 H 0.084 0.916 8 N -0.357 5.357 9 C 0.350 3.650 10 O -0.456 6.456 11 C -0.202 4.202 12 C -0.011 4.011 13 N -0.200 5.200 14 C -0.026 4.026 15 C -0.178 4.178 16 C -0.185 4.185 17 O -0.363 6.363 18 Si 0.691 3.309 19 C -0.030 4.030 20 C -0.164 4.164 21 C -0.149 4.149 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.254 0.746 30 H 0.209 0.791 31 H 0.201 0.799 32 H 0.128 0.872 33 H 0.247 0.753 34 H -0.223 1.223 35 H -0.201 1.201 36 H 0.152 0.848 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.890 4.308 4.347 6.405 hybrid contribution -0.980 -0.647 -1.082 1.597 sum 0.910 3.661 3.265 4.989 Atomic orbital electron populations 1.21837 0.95050 1.01764 1.02059 1.21161 0.95662 0.99851 0.94250 0.90346 1.21557 0.94197 1.00939 0.98229 1.21782 0.96436 1.01645 0.95838 1.21049 0.78203 1.00201 0.96338 0.91615 1.45892 1.07635 1.29822 1.52320 1.18254 0.86989 0.81236 0.78479 1.90795 1.70507 1.39094 1.45201 1.21012 0.93769 1.00497 1.04933 1.23445 0.89928 0.95059 0.92667 1.67808 1.08327 1.24880 1.18966 1.23241 1.01300 0.88337 0.89740 1.21455 0.94569 0.99794 1.01986 1.25274 1.10671 0.83154 0.99368 1.86508 1.89335 1.29131 1.31282 0.93711 0.70925 0.76850 0.89460 1.21631 0.93656 0.95164 0.92541 1.21864 0.96430 1.00998 0.97058 1.21548 0.94123 1.00691 0.98577 0.92002 0.92728 0.93081 0.92368 0.90163 0.90375 0.89433 0.74621 0.79102 0.79869 0.87192 0.75295 1.22274 1.20129 0.84786 0.90427 0.93945 0.92755 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.37 9.19 71.98 0.66 1.04 16 2 C -0.09 0.27 2.72 -10.79 -0.03 0.24 16 3 H 0.08 -0.32 8.14 -2.38 -0.02 -0.34 16 4 C -0.11 0.46 5.20 30.60 0.16 0.61 16 5 C -0.12 0.64 5.39 30.59 0.16 0.81 16 6 C 0.15 -0.04 2.45 44.99 0.11 0.07 16 7 H 0.07 0.35 7.58 -2.39 -0.02 0.33 16 8 N -0.71 1.08 5.03 -445.41 -2.24 -1.16 16 9 C 0.56 3.03 7.75 86.79 0.67 3.70 16 10 O -0.58 -8.34 16.08 -3.88 -0.06 -8.40 16 11 C -0.20 -0.45 5.89 -19.99 -0.12 -0.57 16 12 C 0.15 -0.30 10.71 85.02 0.91 0.61 16 13 N -0.49 -0.09 10.35 -194.75 -2.01 -2.10 16 14 C 0.13 -0.24 9.84 84.71 0.83 0.60 16 15 C -0.18 0.05 5.39 -19.81 -0.11 -0.05 16 16 C -0.08 0.11 2.83 71.24 0.20 0.32 16 17 O -0.55 0.02 12.78 -148.98 -1.90 -1.89 16 18 Si 0.79 -3.69 29.82 68.60 2.05 -1.64 16 19 C 0.00 -0.01 9.31 22.73 0.21 0.20 16 20 C -0.12 -0.08 5.49 30.59 0.17 0.08 16 21 C -0.11 0.02 5.21 30.59 0.16 0.18 16 22 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 23 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 24 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 25 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 28 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 29 H 0.42 -3.52 6.67 -92.71 -0.62 -4.13 16 30 H 0.19 -1.82 6.42 -2.91 -0.02 -1.84 16 31 H 0.18 -1.30 4.88 -2.91 -0.01 -1.31 16 32 H 0.11 0.00 7.96 -2.39 -0.02 -0.02 16 33 H 0.40 -3.36 8.70 -74.06 -0.64 -4.01 16 34 H -0.30 -0.93 7.11 99.48 0.71 -0.23 16 35 H -0.27 0.26 7.11 99.48 0.71 0.97 16 36 H 0.13 0.94 7.74 -2.92 -0.02 0.92 16 37 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: 0.00 -18.85 323.31 -0.35 -19.20 By element: Atomic # 1 Polarization: -11.67 SS G_CDS: -0.17 Total: -11.84 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 4.00 Total: 7.84 kcal Atomic # 7 Polarization: 0.99 SS G_CDS: -4.26 Total: -3.26 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -1.97 Total: -10.29 kcal Atomic # 14 Polarization: -3.69 SS G_CDS: 2.05 Total: -1.64 kcal Total: -18.85 -0.35 -19.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_13287814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.470 kcal (2) G-P(sol) polarization free energy of solvation -18.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds