Wall clock time and date at job start Tue Mar 9 2021 14:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36414 * 125.80056 * 2 1 4 4 C 1.47378 * 127.19324 * 359.97088 * 3 2 1 5 5 O 1.21606 * 120.00200 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99729 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99474 * 179.97438 * 6 4 3 8 8 H 1.08998 * 109.48027 * 34.99734 * 7 6 4 9 9 C 1.53006 * 109.47078 * 154.99960 * 7 6 4 10 10 C 1.52997 * 109.47269 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47482 * 299.99806 * 10 9 7 12 12 H 1.08998 * 109.46862 * 300.00565 * 11 10 9 13 13 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 14 14 C 1.53006 * 109.47223 * 59.99712 * 11 10 9 15 15 C 1.52997 * 109.47127 * 300.00506 * 14 11 10 16 16 C 1.47023 * 105.61473 * 180.22584 * 3 2 1 17 17 C 1.34179 * 105.94827 * 359.63143 * 16 3 2 18 18 C 1.50701 * 125.43200 * 180.12448 * 17 16 3 19 19 O 1.42903 * 109.47160 * 300.26528 * 18 17 16 20 20 Si 1.86306 * 109.47011 * 180.26893 * 18 17 16 21 21 O 1.33645 * 125.80090 * 180.02562 * 2 1 3 22 22 H 1.08999 * 109.47425 * 89.99313 * 1 2 3 23 23 H 1.08996 * 109.47197 * 210.00102 * 1 2 3 24 24 H 1.09006 * 109.46722 * 330.00158 * 1 2 3 25 25 H 0.96990 * 120.00291 * 359.97438 * 6 4 3 26 26 H 1.09001 * 109.47369 * 59.99066 * 9 7 6 27 27 H 1.09004 * 109.46785 * 299.99565 * 9 7 6 28 28 H 1.09002 * 109.47153 * 179.97438 * 10 9 7 29 29 H 1.09001 * 109.46832 * 59.99780 * 10 9 7 30 30 H 1.09002 * 109.47153 * 59.99783 * 13 11 10 31 31 H 1.09001 * 109.46832 * 299.99974 * 13 11 10 32 32 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 33 33 H 1.09001 * 109.47002 * 60.00080 * 14 11 10 34 34 H 1.08993 * 109.46955 * 180.02562 * 14 11 10 35 35 H 1.09001 * 109.47289 * 299.99953 * 15 14 11 36 36 H 1.09002 * 109.47153 * 179.97438 * 15 14 11 37 37 H 1.07994 * 127.02488 * 179.74499 * 16 3 2 38 38 H 1.08992 * 109.47364 * 60.26749 * 18 17 16 39 39 H 0.96703 * 113.99957 * 300.00220 * 19 18 17 40 40 H 1.48501 * 109.99988 * 58.67933 * 20 18 17 41 41 H 1.48492 * 109.99908 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1064 0.0000 4 6 1.8740 2.5157 -0.0006 5 8 0.6891 2.7892 -0.0016 6 7 2.7931 3.5015 -0.0010 7 6 2.3646 4.9024 -0.0022 8 1 1.4531 5.0042 0.5868 9 6 3.4654 5.7730 0.6072 10 6 3.0182 7.2362 0.6054 11 6 2.7497 7.6857 -0.8321 12 1 3.6613 7.5836 -1.4209 13 6 2.3019 9.1487 -0.8338 14 6 1.6489 6.8152 -1.4416 15 6 2.0962 5.3520 -1.4399 16 6 3.6849 0.5991 -0.0056 17 6 3.5858 -0.7390 -0.0001 18 6 4.7458 -1.7010 -0.0001 19 8 5.5422 -1.4870 -1.1672 20 14 4.1026 -3.4495 0.0006 21 8 2.2888 -1.0839 -0.0005 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8901 0.5138 25 1 3.7382 3.2834 -0.0006 26 1 4.3770 5.6713 0.0182 27 1 3.6569 5.4525 1.6313 28 1 3.8022 7.8563 1.0399 29 1 2.1066 7.3381 1.1942 30 1 3.0858 9.7692 -0.3995 31 1 1.3901 9.2502 -0.2452 32 1 2.1110 9.4691 -1.8581 33 1 0.7373 6.9171 -0.8528 34 1 1.4580 7.1352 -2.4659 35 1 3.0078 5.2500 -2.0286 36 1 1.3118 4.7318 -1.8736 37 1 4.5928 1.1839 -0.0110 38 1 5.3538 -1.5372 0.8896 39 1 5.0647 -1.6157 -1.9982 40 1 3.2461 -3.6761 -1.1912 41 1 5.2368 -4.4079 0.0012 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_13308374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:34:32 Heat of formation + Delta-G solvation = -70.180753 kcal Electronic energy + Delta-G solvation = -22259.175663 eV Core-core repulsion = 18913.483915 eV Total energy + Delta-G solvation = -3345.691748 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.78515 -40.99797 -39.26537 -38.16802 -35.75745 -34.21797 -33.17222 -32.01393 -31.77941 -29.41764 -27.17488 -25.66401 -24.21227 -23.74270 -22.59500 -21.67023 -21.17016 -20.38009 -18.99285 -17.98278 -17.73448 -17.33531 -16.79948 -16.18351 -16.02641 -15.80009 -15.42490 -15.21033 -15.20245 -14.83860 -14.32861 -14.23197 -14.15989 -13.94610 -13.84237 -13.60510 -13.23210 -13.15000 -12.94220 -12.83793 -12.54750 -12.18834 -12.11710 -11.94905 -11.69910 -11.33010 -11.16867 -11.04284 -10.95788 -10.73935 -10.12154 -9.59184 -4.94302 0.21329 0.80789 1.17464 1.41253 1.69527 1.90841 2.13233 2.23497 3.15653 3.37364 3.60187 3.70522 3.73607 3.75942 3.92437 4.08395 4.10767 4.17302 4.37150 4.38970 4.42601 4.47471 4.51736 4.55141 4.57342 4.64450 4.74488 4.77732 4.81566 4.95106 4.98594 5.07394 5.11047 5.13856 5.16902 5.20108 5.22606 5.34331 5.39334 5.48333 5.55231 5.87289 6.32613 6.48091 7.15107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.085 3.915 3 C -0.270 4.270 4 C 0.588 3.412 5 O -0.574 6.574 6 N -0.710 5.710 7 C 0.148 3.852 8 H 0.067 0.933 9 C -0.119 4.119 10 C -0.110 4.110 11 C -0.091 4.091 12 H 0.075 0.925 13 C -0.149 4.149 14 C -0.110 4.110 15 C -0.123 4.123 16 C -0.147 4.147 17 C -0.058 4.058 18 C -0.032 4.032 19 O -0.533 6.533 20 Si 0.770 3.230 21 O -0.171 6.171 22 H 0.095 0.905 23 H 0.102 0.898 24 H 0.097 0.903 25 H 0.412 0.588 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.177 0.823 38 H 0.158 0.842 39 H 0.390 0.610 40 H -0.295 1.295 41 H -0.282 1.282 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.626 0.248 1.785 3.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.031 3.969 3 C -0.274 4.274 4 C 0.377 3.623 5 O -0.456 6.456 6 N -0.360 5.360 7 C 0.044 3.956 8 H 0.086 0.914 9 C -0.157 4.157 10 C -0.148 4.148 11 C -0.110 4.110 12 H 0.093 0.907 13 C -0.206 4.206 14 C -0.148 4.148 15 C -0.162 4.162 16 C -0.167 4.167 17 C -0.106 4.106 18 C -0.141 4.141 19 O -0.342 6.342 20 Si 0.674 3.326 21 O -0.069 6.069 22 H 0.113 0.887 23 H 0.120 0.880 24 H 0.115 0.885 25 H 0.248 0.752 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.194 0.806 38 H 0.175 0.825 39 H 0.240 0.760 40 H -0.222 1.222 41 H -0.208 1.208 Dipole moment (debyes) X Y Z Total from point charges 2.154 -0.475 1.812 2.854 hybrid contribution 0.446 0.523 -1.296 1.467 sum 2.600 0.048 0.516 2.651 Atomic orbital electron populations 1.20705 0.82626 1.05717 1.05029 1.23219 0.94768 0.83001 0.95866 1.21240 0.94329 0.93481 1.18373 1.17397 0.85270 0.84469 0.75166 1.90749 1.17958 1.84558 1.52341 1.45807 1.10018 1.05658 1.74515 1.21004 0.98614 0.79311 0.96657 0.91432 1.21768 0.97572 0.94767 1.01592 1.21547 1.01918 0.94857 0.96494 1.21158 0.98493 0.94838 0.96474 0.90650 1.21832 1.01455 0.95470 1.01873 1.21543 0.98509 0.93497 1.01266 1.21853 1.01335 0.96650 0.96374 1.22784 0.96339 0.93673 1.03863 1.22853 0.82866 0.95926 1.08916 1.24499 0.90056 1.06985 0.92602 1.86640 1.39357 1.91719 1.16438 0.93507 0.78828 0.72185 0.88056 1.83672 1.16799 1.34954 1.71435 0.88670 0.87953 0.88482 0.75200 0.90031 0.90696 0.90302 0.92143 0.92083 0.92901 0.92663 0.92469 0.91522 0.91041 0.93748 0.80572 0.82472 0.75996 1.22217 1.20823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.09 9.89 71.24 0.70 0.62 16 2 C 0.09 0.35 7.37 25.26 0.19 0.54 16 3 C -0.27 -1.29 6.31 -18.99 -0.12 -1.41 16 4 C 0.59 4.27 7.78 86.65 0.67 4.95 16 5 O -0.57 -7.81 14.51 -4.05 -0.06 -7.87 16 6 N -0.71 -1.05 5.07 -445.83 -2.26 -3.31 16 7 C 0.15 0.22 2.46 45.00 0.11 0.33 16 8 H 0.07 0.43 7.58 -2.39 -0.02 0.41 16 9 C -0.12 0.39 5.39 30.60 0.16 0.55 16 10 C -0.11 0.32 5.20 30.59 0.16 0.47 16 11 C -0.09 0.18 2.72 -10.79 -0.03 0.15 16 12 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 13 C -0.15 0.30 9.19 71.98 0.66 0.96 16 14 C -0.11 -0.05 5.20 30.60 0.16 0.11 16 15 C -0.12 -0.25 5.49 30.60 0.17 -0.08 16 16 C -0.15 -0.06 10.46 23.65 0.25 0.19 16 17 C -0.06 -0.01 6.20 24.76 0.15 0.14 16 18 C -0.03 0.10 2.98 71.24 0.21 0.31 16 19 O -0.53 0.56 12.86 -148.98 -1.92 -1.35 16 20 Si 0.77 -1.90 32.09 68.60 2.20 0.30 16 21 O -0.17 -0.44 8.89 4.62 0.04 -0.40 16 22 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 23 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 24 H 0.10 0.42 6.49 -2.38 -0.02 0.41 16 25 H 0.41 -1.50 7.77 -92.72 -0.72 -2.22 16 26 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.07 -0.28 8.14 -2.38 -0.02 -0.30 16 28 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 29 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.05 -0.10 8.14 -2.38 -0.02 -0.12 16 33 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 36 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.18 -0.76 7.74 -2.91 -0.02 -0.78 16 38 H 0.16 -1.13 7.96 -2.39 -0.02 -1.15 16 39 H 0.39 -2.22 8.70 -74.05 -0.64 -2.87 16 40 H -0.30 -1.20 7.11 99.48 0.71 -0.49 16 41 H -0.28 -0.87 7.11 99.48 0.71 -0.16 16 Total: 0.00 -14.62 334.50 1.16 -13.46 By element: Atomic # 1 Polarization: -8.37 SS G_CDS: -0.30 Total: -8.67 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 3.45 Total: 7.84 kcal Atomic # 7 Polarization: -1.05 SS G_CDS: -2.26 Total: -3.31 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -1.93 Total: -9.62 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: 2.20 Total: 0.30 kcal Total: -14.62 1.16 -13.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_13308374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.717 kcal (2) G-P(sol) polarization free energy of solvation -14.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds