Wall clock time and date at job start Tue Mar 9 2021 14:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47176 * 2 1 4 4 C 1.53002 * 109.47448 * 119.99936 * 2 1 3 5 5 C 1.52995 * 109.47448 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47293 * 300.00412 * 5 4 2 7 7 H 1.09007 * 109.46626 * 299.99673 * 6 5 4 8 8 N 1.46504 * 109.47244 * 180.02562 * 6 5 4 9 9 C 1.34769 * 119.99932 * 155.00206 * 8 6 5 10 10 O 1.21584 * 120.00307 * 359.97438 * 9 8 6 11 11 C 1.47544 * 119.99964 * 179.97438 * 9 8 6 12 12 C 1.40132 * 120.19073 * 179.97438 * 11 9 8 13 13 O 1.35650 * 120.15463 * 0.03362 * 12 11 9 14 14 C 1.38714 * 119.69622 * 179.75379 * 12 11 9 15 15 C 1.38056 * 120.08510 * 0.53332 * 14 12 11 16 16 C 1.50699 * 119.80628 * 179.73088 * 15 14 12 17 17 O 1.42901 * 109.46830 * 299.73140 * 16 15 14 18 18 Si 1.86298 * 109.46950 * 179.73577 * 16 15 14 19 19 C 1.38552 * 120.38730 * 359.46613 * 15 14 12 20 20 C 1.37791 * 120.30338 * 0.26126 * 19 15 14 21 21 C 1.52999 * 109.47382 * 59.99767 * 6 5 4 22 22 C 1.53003 * 109.47275 * 239.99953 * 2 1 3 23 23 H 1.08996 * 109.47047 * 299.99758 * 1 2 3 24 24 H 1.08999 * 109.47144 * 60.00375 * 1 2 3 25 25 H 1.09002 * 109.47099 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46500 * 60.00210 * 4 2 1 27 27 H 1.08999 * 109.46993 * 300.00639 * 4 2 1 28 28 H 1.08993 * 109.47257 * 180.02562 * 5 4 2 29 29 H 1.08998 * 109.47176 * 60.00064 * 5 4 2 30 30 H 0.96995 * 119.99372 * 334.98908 * 8 6 5 31 31 H 0.96704 * 113.99725 * 90.00018 * 13 12 11 32 32 H 1.07999 * 119.95561 * 180.29457 * 14 12 11 33 33 H 1.08991 * 109.47351 * 59.73287 * 16 15 14 34 34 H 0.96708 * 114.00246 * 299.99864 * 17 16 15 35 35 H 1.48506 * 109.99834 * 180.02562 * 18 16 15 36 36 H 1.48502 * 110.00011 * 301.31529 * 18 16 15 37 37 H 1.07999 * 119.85109 * 180.25083 * 19 15 14 38 38 H 1.07991 * 120.04753 * 180.02562 * 20 19 15 39 39 H 1.08995 * 109.47315 * 59.99914 * 21 6 5 40 40 H 1.08996 * 109.47419 * 180.02562 * 21 6 5 41 41 H 1.08998 * 109.47056 * 300.00119 * 22 2 1 42 42 H 1.09007 * 109.47101 * 60.00068 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7207 1.2496 6 6 4.0806 -1.4415 0.0003 7 1 3.7176 -2.4693 0.0001 8 7 5.5456 -1.4415 0.0009 9 6 6.2197 -2.3973 -0.6686 10 8 5.6121 -3.2598 -1.2728 11 6 7.6952 -2.3969 -0.6685 12 6 8.4002 -3.3892 -1.3629 13 8 7.7293 -4.3548 -2.0394 14 6 9.7872 -3.3761 -1.3601 15 6 10.4687 -2.3958 -0.6668 16 6 11.9757 -2.3911 -0.6630 17 8 12.4543 -3.6107 -0.0923 18 14 12.5896 -0.9504 0.3459 19 6 9.7752 -1.4131 0.0210 20 6 8.3973 -1.4076 0.0243 21 6 3.5706 -0.7202 -1.2490 22 6 2.0400 -0.7213 -1.2492 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6767 -1.7489 1.2491 27 1 1.6766 -0.2075 2.1392 28 1 3.9333 -1.2349 2.1393 29 1 3.9330 0.3071 1.2498 30 1 6.0303 -0.7534 0.4831 31 1 7.5352 -4.1280 -2.9592 32 1 10.3348 -4.1360 -1.8978 33 1 12.3413 -2.3006 -1.6858 34 1 12.1671 -3.7576 0.8194 35 1 14.0746 -0.9342 0.3569 36 1 12.0726 0.3221 -0.2187 37 1 10.3171 -0.6481 0.5571 38 1 7.8610 -0.6394 0.5615 39 1 3.9334 0.3075 -1.2487 40 1 3.9339 -1.2340 -2.1389 41 1 1.6767 -1.7489 -1.2492 42 1 1.6767 -0.2074 -2.1393 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_13422076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:34:37 Heat of formation + Delta-G solvation = -97.573905 kcal Electronic energy + Delta-G solvation = -23503.228197 eV Core-core repulsion = 20028.122452 eV Total energy + Delta-G solvation = -3475.105745 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 292.151 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.73997 -40.45396 -39.16835 -38.39718 -37.15216 -35.68678 -33.24507 -31.76066 -31.63033 -31.12194 -27.82739 -26.50244 -23.92421 -23.78598 -23.52001 -22.20506 -21.51671 -20.78203 -19.46320 -18.69017 -18.21331 -17.54436 -16.63497 -16.46128 -16.25994 -16.19625 -15.91136 -15.52263 -15.22444 -15.19275 -15.09683 -14.79020 -14.46377 -14.20482 -13.84426 -13.62359 -13.30321 -13.21267 -13.14180 -12.87460 -12.53121 -12.30978 -12.18665 -12.10201 -11.92936 -11.71490 -11.60375 -11.29216 -11.12814 -10.87635 -10.51824 -10.20687 -10.00425 -9.77170 -4.97430 -0.42233 0.13654 1.29017 1.64057 1.72494 1.99732 2.04766 2.56299 3.11712 3.42857 3.52954 3.64592 3.69017 3.73478 3.78416 3.92292 4.08106 4.09942 4.18972 4.26782 4.38666 4.40757 4.44434 4.53407 4.57081 4.58524 4.74604 4.76975 4.81127 4.95497 4.99791 5.02150 5.08753 5.11381 5.16342 5.18645 5.23239 5.24129 5.34710 5.40842 5.47972 5.56549 5.59204 6.48943 6.68156 6.72830 7.17751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 H 0.079 0.921 4 C -0.112 4.112 5 C -0.118 4.118 6 C 0.147 3.853 7 H 0.060 0.940 8 N -0.709 5.709 9 C 0.554 3.446 10 O -0.566 6.566 11 C -0.180 4.180 12 C 0.151 3.849 13 O -0.499 6.499 14 C -0.141 4.141 15 C -0.073 4.073 16 C -0.086 4.086 17 O -0.556 6.556 18 Si 0.790 3.210 19 C -0.131 4.131 20 C -0.052 4.052 21 C -0.123 4.123 22 C -0.111 4.111 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.414 0.586 31 H 0.406 0.594 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.397 0.603 35 H -0.304 1.304 36 H -0.273 1.273 37 H 0.165 0.835 38 H 0.170 0.830 39 H 0.077 0.923 40 H 0.041 0.959 41 H 0.052 0.948 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.265 6.986 5.069 8.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.150 4.150 5 C -0.156 4.156 6 C 0.043 3.957 7 H 0.078 0.922 8 N -0.362 5.362 9 C 0.342 3.658 10 O -0.445 6.445 11 C -0.184 4.184 12 C 0.105 3.895 13 O -0.311 6.311 14 C -0.159 4.159 15 C -0.074 4.074 16 C -0.195 4.195 17 O -0.364 6.364 18 Si 0.695 3.305 19 C -0.148 4.148 20 C -0.071 4.071 21 C -0.161 4.161 22 C -0.150 4.150 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.252 0.748 31 H 0.265 0.735 32 H 0.151 0.849 33 H 0.127 0.873 34 H 0.247 0.753 35 H -0.232 1.232 36 H -0.199 1.199 37 H 0.181 0.819 38 H 0.187 0.813 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.556 6.739 4.585 8.170 hybrid contribution -0.030 -0.337 -1.373 1.414 sum 0.526 6.402 3.212 7.182 Atomic orbital electron populations 1.21838 0.95078 1.01725 1.02075 1.21157 0.95636 0.99855 0.94226 0.90264 1.21556 0.94289 1.00842 0.98266 1.21770 0.96360 1.01617 0.95873 1.20986 0.78610 0.99858 0.96252 0.92157 1.45885 1.07332 1.30121 1.52857 1.18356 0.87375 0.81201 0.78829 1.90805 1.70493 1.38492 1.44723 1.20474 0.92825 0.99055 1.06057 1.18775 0.89989 0.86923 0.93862 1.84720 1.76753 1.40069 1.29595 1.21333 0.92341 1.00238 1.02025 1.20587 0.96740 0.94487 0.95543 1.25457 0.90962 0.98348 1.04748 1.86497 1.75433 1.39996 1.34507 0.93572 0.76807 0.72935 0.87204 1.21250 0.94238 0.99154 1.00184 1.21507 0.94311 0.95992 0.95257 1.21854 0.96275 1.00930 0.97075 1.21562 0.94248 1.00585 0.98563 0.91991 0.92679 0.93167 0.92563 0.90166 0.90575 0.89371 0.74761 0.73472 0.84933 0.87255 0.75311 1.23207 1.19933 0.81851 0.81311 0.90434 0.93965 0.92921 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.36 9.19 71.98 0.66 1.02 16 2 C -0.09 0.26 2.72 -10.79 -0.03 0.23 16 3 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 4 C -0.11 0.41 5.20 30.59 0.16 0.57 16 5 C -0.12 0.59 5.39 30.59 0.16 0.75 16 6 C 0.15 0.05 2.45 44.99 0.11 0.16 16 7 H 0.06 0.41 7.58 -2.38 -0.02 0.39 16 8 N -0.71 0.67 5.03 -445.69 -2.24 -1.57 16 9 C 0.55 3.54 7.73 86.70 0.67 4.21 16 10 O -0.57 -8.71 14.82 16.94 0.25 -8.46 16 11 C -0.18 -0.50 5.89 -20.01 -0.12 -0.62 16 12 C 0.15 0.86 6.72 22.84 0.15 1.01 16 13 O -0.50 -4.50 11.58 -68.73 -0.80 -5.29 16 14 C -0.14 -0.37 9.53 22.34 0.21 -0.16 16 15 C -0.07 0.14 5.39 -19.83 -0.11 0.04 16 16 C -0.09 0.24 2.81 71.24 0.20 0.44 16 17 O -0.56 0.46 12.77 -148.98 -1.90 -1.44 16 18 Si 0.79 -4.67 29.77 68.60 2.04 -2.63 16 19 C -0.13 0.78 8.64 22.24 0.19 0.97 16 20 C -0.05 0.27 9.54 22.52 0.21 0.48 16 21 C -0.12 -0.10 5.50 30.61 0.17 0.07 16 22 C -0.11 0.00 5.21 30.61 0.16 0.16 16 23 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 24 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 25 H 0.05 -0.06 8.14 -2.39 -0.02 -0.07 16 26 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 27 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 30 H 0.41 -3.42 6.63 -92.71 -0.61 -4.04 16 31 H 0.41 0.91 9.06 -74.05 -0.67 0.24 16 32 H 0.13 0.44 8.06 -2.91 -0.02 0.41 16 33 H 0.11 -0.16 7.96 -2.39 -0.02 -0.18 16 34 H 0.40 -3.55 8.70 -74.05 -0.64 -4.19 16 35 H -0.30 -0.83 7.11 99.48 0.71 -0.12 16 36 H -0.27 0.78 7.11 99.48 0.71 1.49 16 37 H 0.16 -1.93 4.85 -2.91 -0.01 -1.94 16 38 H 0.17 -2.17 6.40 -2.92 -0.02 -2.19 16 39 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.07 -0.01 8.14 -2.38 -0.02 -0.03 16 Total: 0.00 -21.87 337.03 -0.67 -22.55 By element: Atomic # 1 Polarization: -11.65 SS G_CDS: -0.84 Total: -12.50 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 2.81 Total: 9.34 kcal Atomic # 7 Polarization: 0.67 SS G_CDS: -2.24 Total: -1.57 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -2.45 Total: -15.19 kcal Atomic # 14 Polarization: -4.67 SS G_CDS: 2.04 Total: -2.63 kcal Total: -21.87 -0.67 -22.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_13422076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.026 kcal (2) G-P(sol) polarization free energy of solvation -21.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds