Wall clock time and date at job start Tue Mar 9 2021 14:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47557 * 2 1 4 4 C 1.53008 * 109.46883 * 119.99977 * 2 1 3 5 5 C 1.52993 * 109.46833 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.47566 * 299.99618 * 5 4 2 7 7 H 1.08995 * 109.47775 * 300.00425 * 6 5 4 8 8 N 1.46505 * 109.47326 * 179.97438 * 6 5 4 9 9 C 1.34780 * 119.99577 * 85.00277 * 8 6 5 10 10 O 1.21281 * 120.00134 * 0.02562 * 9 8 6 11 11 C 1.50702 * 119.99848 * 180.02562 * 9 8 6 12 12 C 1.50694 * 109.47185 * 180.02562 * 11 9 8 13 13 C 1.34852 * 125.88865 * 85.02130 * 12 11 9 14 14 C 1.40897 * 107.41383 * 179.97438 * 13 12 11 15 15 C 1.34849 * 107.41876 * 0.02562 * 14 13 12 16 16 C 1.50697 * 125.88861 * 179.97438 * 15 14 13 17 17 O 1.42905 * 109.46996 * 245.02375 * 16 15 14 18 18 Si 1.86301 * 109.47403 * 5.02638 * 16 15 14 19 19 N 1.36340 * 125.89065 * 265.30662 * 12 11 9 20 20 C 1.53008 * 109.46732 * 60.00320 * 6 5 4 21 21 C 1.52998 * 109.46883 * 299.99796 * 20 6 5 22 22 H 1.08997 * 109.47557 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47429 * 300.00257 * 1 2 3 24 24 H 1.09007 * 109.46832 * 60.00148 * 1 2 3 25 25 H 1.08994 * 109.46897 * 300.00092 * 4 2 1 26 26 H 1.08997 * 109.47005 * 59.99685 * 4 2 1 27 27 H 1.09007 * 109.46782 * 179.97438 * 5 4 2 28 28 H 1.08997 * 109.47310 * 60.00205 * 5 4 2 29 29 H 0.97000 * 120.00185 * 265.00427 * 8 6 5 30 30 H 1.08998 * 109.47253 * 59.99774 * 11 9 8 31 31 H 1.09009 * 109.46939 * 300.00192 * 11 9 8 32 32 H 1.08000 * 126.29497 * 0.02562 * 13 12 11 33 33 H 1.07998 * 126.28781 * 179.97438 * 14 13 12 34 34 H 1.09001 * 109.46613 * 125.02786 * 16 15 14 35 35 H 0.96696 * 114.00036 * 60.00342 * 17 16 15 36 36 H 1.48497 * 109.99842 * 179.97438 * 18 16 15 37 37 H 1.48498 * 109.99736 * 301.31722 * 18 16 15 38 38 H 0.96992 * 125.63989 * 0.02577 * 19 12 11 39 39 H 1.08997 * 109.47005 * 60.00111 * 20 6 5 40 40 H 1.09008 * 109.46940 * 179.97438 * 20 6 5 41 41 H 1.09007 * 109.46832 * 180.02562 * 21 20 6 42 42 H 1.08995 * 109.47167 * 299.99615 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5699 -0.7218 1.2490 6 6 4.0794 -1.4435 -0.0001 7 1 3.7158 -2.4710 0.0000 8 7 5.5445 -1.4435 -0.0007 9 6 6.2186 -2.3994 0.6689 10 8 5.6124 -3.2599 1.2714 11 6 7.7256 -2.3991 0.6688 12 6 8.2282 -3.5631 1.4833 13 6 8.4026 -4.8236 1.0369 14 6 8.8853 -5.5901 2.1160 15 6 8.9870 -4.7689 3.1808 16 6 9.4627 -5.1605 4.5561 17 8 8.3890 -5.0216 5.4889 18 14 10.0400 -6.9316 4.5328 19 7 8.5799 -3.5247 2.8000 20 6 3.5695 -0.7222 -1.2494 21 6 2.0395 -0.7217 -1.2492 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.6766 -0.2075 2.1392 26 1 1.6765 -1.7489 1.2493 27 1 3.9332 -1.2353 2.1393 28 1 3.9336 0.3056 1.2488 29 1 6.0293 -0.7555 -0.4829 30 1 8.0888 -1.4676 1.1030 31 1 8.0889 -2.4887 -0.3551 32 1 8.2087 -5.1799 0.0360 33 1 9.1284 -6.6421 2.0946 34 1 10.2879 -4.5132 4.8530 35 1 7.6188 -5.5701 5.2866 36 1 10.5122 -7.3297 5.8832 37 1 8.9328 -7.8210 4.0987 38 1 8.5480 -2.7412 3.3708 39 1 3.9332 0.3053 -1.2496 40 1 3.9329 -1.2361 -2.1395 41 1 1.6762 -0.2083 -2.1395 42 1 1.6758 -1.7492 -1.2490 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_14644196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:34:55 Heat of formation + Delta-G solvation = -45.179155 kcal Electronic energy + Delta-G solvation = -21872.932959 eV Core-core repulsion = 18626.044024 eV Total energy + Delta-G solvation = -3246.888935 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.34850 -40.97401 -39.28956 -37.86910 -35.67855 -33.36848 -31.98891 -31.86711 -31.78728 -29.39173 -26.85422 -25.09825 -23.78294 -22.51432 -21.67025 -21.37483 -21.11639 -20.66219 -19.05247 -18.11346 -17.56273 -16.80433 -16.42046 -16.37808 -15.82157 -15.32369 -15.23806 -15.20017 -15.00610 -14.64473 -14.38918 -14.26903 -14.03269 -13.87804 -13.71657 -13.41643 -13.25138 -13.17024 -12.81015 -12.53666 -12.20133 -12.12977 -11.94860 -11.86140 -11.69576 -11.32547 -11.15102 -10.89596 -10.83232 -10.06831 -9.81081 -8.98168 -4.88570 1.07907 1.29099 1.62019 1.67061 1.83921 1.93666 2.30827 2.50356 3.36354 3.61898 3.68952 3.70254 3.80208 3.84897 4.06560 4.08190 4.16002 4.22038 4.39673 4.40998 4.42045 4.49361 4.50919 4.54104 4.61922 4.74243 4.78233 4.79477 4.92872 4.98175 5.06186 5.11555 5.15185 5.21487 5.24446 5.27825 5.32278 5.37613 5.49897 5.54772 5.97499 6.12031 6.36649 6.53996 6.66658 7.27489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 H 0.078 0.922 4 C -0.112 4.112 5 C -0.122 4.122 6 C 0.147 3.853 7 H 0.057 0.943 8 N -0.715 5.715 9 C 0.509 3.491 10 O -0.579 6.579 11 C -0.067 4.067 12 C 0.035 3.965 13 C -0.201 4.201 14 C -0.202 4.202 15 C -0.017 4.017 16 C -0.064 4.064 17 O -0.555 6.555 18 Si 0.801 3.199 19 N -0.537 5.537 20 C -0.118 4.118 21 C -0.112 4.112 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.418 0.582 30 H 0.129 0.871 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.149 0.851 34 H 0.127 0.873 35 H 0.385 0.615 36 H -0.296 1.296 37 H -0.291 1.291 38 H 0.418 0.582 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.684 5.465 -5.262 8.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 H 0.097 0.903 4 C -0.150 4.150 5 C -0.161 4.161 6 C 0.043 3.957 7 H 0.076 0.924 8 N -0.367 5.367 9 C 0.296 3.704 10 O -0.458 6.458 11 C -0.107 4.107 12 C -0.079 4.079 13 C -0.226 4.226 14 C -0.227 4.227 15 C -0.131 4.131 16 C -0.172 4.172 17 O -0.362 6.362 18 Si 0.705 3.295 19 N -0.132 5.132 20 C -0.156 4.156 21 C -0.150 4.150 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.255 0.745 30 H 0.147 0.853 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.145 0.855 35 H 0.234 0.766 36 H -0.224 1.224 37 H -0.218 1.218 38 H 0.256 0.744 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.549 4.615 -4.157 6.714 hybrid contribution -1.295 0.534 0.601 1.524 sum 1.254 5.149 -3.556 6.382 Atomic orbital electron populations 1.21842 0.95076 1.01722 1.02094 1.21151 0.95651 0.99812 0.94220 0.90317 1.21551 0.94458 1.00475 0.98548 1.21831 0.96173 1.00893 0.97179 1.20906 0.79501 0.99498 0.95844 0.92446 1.45984 1.06982 1.30577 1.53201 1.21096 0.90902 0.80560 0.77859 1.90750 1.71333 1.38973 1.44789 1.20265 0.89938 0.97235 1.03247 1.19925 1.06396 0.97073 0.84535 1.20850 1.08512 0.92846 1.00344 1.20913 1.08669 0.99919 0.93207 1.20901 1.09257 0.85761 0.97148 1.25028 0.92450 1.15644 0.84067 1.86535 1.28672 1.69211 1.51827 0.93395 0.85215 0.70102 0.80813 1.41894 1.51265 1.10456 1.09615 1.21758 0.96199 1.01563 0.96033 1.21560 0.94504 1.00770 0.98184 0.93175 0.92691 0.91945 0.91683 0.93079 0.94276 0.90509 0.74490 0.85335 0.83717 0.84187 0.83337 0.85521 0.76566 1.22412 1.21783 0.74413 0.89573 0.90561 0.90241 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.28 9.19 71.98 0.66 0.94 16 2 C -0.09 0.21 2.72 -10.79 -0.03 0.18 16 3 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 4 C -0.11 -0.07 5.20 30.59 0.16 0.08 16 5 C -0.12 -0.13 5.49 30.59 0.17 0.04 16 6 C 0.15 0.00 2.45 44.99 0.11 0.11 16 7 H 0.06 0.38 7.58 -2.39 -0.02 0.36 16 8 N -0.72 2.20 5.08 -442.52 -2.25 -0.05 16 9 C 0.51 1.30 7.79 87.66 0.68 1.98 16 10 O -0.58 -8.01 15.70 -3.03 -0.05 -8.06 16 11 C -0.07 0.28 6.24 29.10 0.18 0.46 16 12 C 0.03 0.11 5.66 41.08 0.23 0.34 16 13 C -0.20 -1.17 10.77 22.14 0.24 -0.93 16 14 C -0.20 -1.10 9.37 22.14 0.21 -0.89 16 15 C -0.02 -0.07 6.50 41.08 0.27 0.19 16 16 C -0.06 -0.13 3.08 71.23 0.22 0.09 16 17 O -0.55 -3.21 12.88 -148.98 -1.92 -5.13 16 18 Si 0.80 0.24 30.60 68.60 2.10 2.33 16 19 N -0.54 -1.69 6.07 -171.12 -1.04 -2.73 16 20 C -0.12 0.57 5.39 30.60 0.16 0.74 16 21 C -0.11 0.37 5.20 30.59 0.16 0.53 16 22 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 23 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 24 H 0.06 -0.18 8.14 -2.38 -0.02 -0.20 16 25 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 26 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 27 H 0.04 0.26 8.14 -2.38 -0.02 0.24 16 28 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.42 -4.30 8.60 -92.71 -0.80 -5.10 16 30 H 0.13 -1.27 8.14 -2.39 -0.02 -1.29 16 31 H 0.15 -1.38 8.14 -2.38 -0.02 -1.40 16 32 H 0.14 0.53 8.06 -2.91 -0.02 0.50 16 33 H 0.15 0.36 6.24 -2.91 -0.02 0.34 16 34 H 0.13 -0.13 7.96 -2.39 -0.02 -0.15 16 35 H 0.39 0.87 8.70 -74.06 -0.64 0.23 16 36 H -0.30 -1.95 7.11 99.48 0.71 -1.24 16 37 H -0.29 -1.69 7.11 99.48 0.71 -0.98 16 38 H 0.42 -0.11 8.96 -92.71 -0.83 -0.94 16 39 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H 0.08 -0.42 8.14 -2.38 -0.02 -0.44 16 41 H 0.08 -0.39 8.14 -2.38 -0.02 -0.41 16 42 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 Total: 0.00 -20.51 339.69 -0.94 -21.45 By element: Atomic # 1 Polarization: -10.46 SS G_CDS: -1.21 Total: -11.67 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 3.42 Total: 3.85 kcal Atomic # 7 Polarization: 0.50 SS G_CDS: -3.29 Total: -2.78 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -1.97 Total: -13.19 kcal Atomic # 14 Polarization: 0.24 SS G_CDS: 2.10 Total: 2.33 kcal Total: -20.51 -0.94 -21.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_14644196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.726 kcal (2) G-P(sol) polarization free energy of solvation -20.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds