Wall clock time and date at job start Tue Mar 9 2021 14:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46740 * 2 1 4 4 C 1.52995 * 109.47147 * 120.00286 * 2 1 3 5 5 C 1.53007 * 109.47147 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.46816 * 299.99846 * 5 4 2 7 7 H 1.08994 * 109.47559 * 299.99988 * 6 5 4 8 8 N 1.46497 * 109.47117 * 179.97438 * 6 5 4 9 9 C 1.34777 * 119.99987 * 85.00226 * 8 6 5 10 10 O 1.21549 * 119.99811 * 0.02562 * 9 8 6 11 11 C 1.47847 * 120.00159 * 180.02562 * 9 8 6 12 12 C 1.39550 * 120.14458 * 179.97438 * 11 9 8 13 13 C 1.37980 * 119.85388 * 179.97438 * 12 11 9 14 14 C 1.50702 * 119.92788 * 180.02562 * 13 12 11 15 15 O 1.42902 * 109.47390 * 89.99955 * 14 13 12 16 16 C 1.35898 * 116.99730 * 180.02562 * 15 14 13 17 17 C 1.38715 * 120.05279 * 179.97438 * 16 15 14 18 18 C 1.38166 * 119.94528 * 180.02562 * 17 16 15 19 19 C 1.50695 * 119.97278 * 180.02562 * 18 17 16 20 20 O 1.42899 * 109.47032 * 300.00128 * 19 18 17 21 21 Si 1.86300 * 109.47154 * 180.02562 * 19 18 17 22 22 C 1.38243 * 120.05257 * 0.02562 * 18 17 16 23 23 C 1.38289 * 120.11231 * 0.02562 * 22 18 17 24 24 C 1.38117 * 120.05983 * 359.97438 * 23 22 18 25 25 C 1.38335 * 120.14333 * 0.27080 * 13 12 11 26 26 C 1.38381 * 120.29237 * 359.45587 * 25 13 12 27 27 C 1.37935 * 120.14310 * 0.54758 * 26 25 13 28 28 C 1.53005 * 109.47117 * 60.00091 * 6 5 4 29 29 C 1.52996 * 109.46816 * 240.00132 * 2 1 3 30 30 H 1.08997 * 109.46740 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46851 * 299.99750 * 1 2 3 32 32 H 1.08997 * 109.47276 * 59.99769 * 1 2 3 33 33 H 1.09003 * 109.47216 * 299.99741 * 4 2 1 34 34 H 1.08997 * 109.47534 * 60.00200 * 4 2 1 35 35 H 1.08997 * 109.47276 * 179.97438 * 5 4 2 36 36 H 1.08997 * 109.46740 * 59.99714 * 5 4 2 37 37 H 0.97001 * 120.00386 * 265.00058 * 8 6 5 38 38 H 1.08005 * 120.07472 * 359.96085 * 12 11 9 39 39 H 1.09000 * 109.47047 * 329.99349 * 14 13 12 40 40 H 1.09007 * 109.46658 * 209.99884 * 14 13 12 41 41 H 1.08002 * 120.02716 * 359.74939 * 17 16 15 42 42 H 1.09001 * 109.47321 * 60.00277 * 19 18 17 43 43 H 0.96695 * 114.00418 * 300.00052 * 20 19 18 44 44 H 1.48494 * 110.00225 * 58.67554 * 21 19 18 45 45 H 1.48503 * 110.00066 * 180.02562 * 21 19 18 46 46 H 1.08000 * 119.94011 * 179.97438 * 22 18 17 47 47 H 1.08001 * 119.96912 * 179.97438 * 23 22 18 48 48 H 1.07995 * 120.03380 * 179.97438 * 24 23 22 49 49 H 1.08000 * 119.85213 * 179.70373 * 25 13 12 50 50 H 1.08003 * 119.93162 * 180.27299 * 26 25 13 51 51 H 1.08001 * 120.07447 * 179.74955 * 27 26 25 52 52 H 1.09003 * 109.47457 * 59.99893 * 28 6 5 53 53 H 1.09003 * 109.47196 * 179.97438 * 28 6 5 54 54 H 1.09007 * 109.47089 * 59.99923 * 29 2 1 55 55 H 1.08994 * 109.47559 * 299.99988 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5701 -0.7207 1.2495 6 6 4.0806 -1.4416 0.0002 7 1 3.7176 -2.4693 -0.0001 8 7 5.5455 -1.4405 0.0002 9 6 6.2201 -2.3962 0.6696 10 8 5.6130 -3.2592 1.2729 11 6 7.6986 -2.3949 0.6700 12 6 8.4001 -3.3827 1.3625 13 6 9.7799 -3.3760 1.3585 14 6 10.5391 -4.4423 2.1053 15 8 10.7796 -5.5520 1.2377 16 6 11.4579 -6.6076 1.7598 17 6 11.7257 -7.7187 0.9738 18 6 12.4150 -8.7908 1.5070 19 6 12.7067 -9.9980 0.6534 20 8 11.4778 -10.5686 0.1995 21 14 13.6419 -11.2577 1.6582 22 6 12.8374 -8.7570 2.8229 23 6 12.5708 -7.6508 3.6089 24 6 11.8820 -6.5765 3.0806 25 6 10.4678 -2.3898 0.6745 26 6 9.7783 -1.4106 -0.0188 27 6 8.3989 -1.4058 -0.0228 28 6 3.5705 -0.7202 -1.2490 29 6 2.0400 -0.7212 -1.2492 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6768 -0.2075 2.1392 34 1 1.6768 -1.7489 1.2492 35 1 3.9335 -1.2342 2.1396 36 1 3.9330 0.3071 1.2497 37 1 6.0301 -0.7521 -0.4816 38 1 7.8642 -4.1506 1.9007 39 1 9.9532 -4.7720 2.9633 40 1 11.4908 -4.0371 2.4493 41 1 11.3916 -7.7476 -0.0529 42 1 13.3077 -9.6991 -0.2054 43 1 10.8915 -10.8579 0.9120 44 1 12.8462 -11.6496 2.8492 45 1 13.9362 -12.4529 0.8275 46 1 13.3758 -9.5962 3.2379 47 1 12.9015 -7.6270 4.6367 48 1 11.6737 -5.7131 3.6949 49 1 11.5478 -2.3863 0.6785 50 1 10.3212 -0.6459 -0.5545 51 1 7.8619 -0.6387 -0.5610 52 1 3.9335 0.3076 -1.2488 53 1 3.9346 -1.2335 -2.1390 54 1 1.6766 -0.2073 -2.1393 55 1 1.6767 -1.7488 -1.2493 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_4549630.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:35:18 Heat of formation + Delta-G solvation = -62.599388 kcal Electronic energy + Delta-G solvation = -33618.726196 eV Core-core repulsion = 29165.619641 eV Total energy + Delta-G solvation = -4453.106555 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.198 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.65623 -41.27395 -40.14414 -39.30084 -38.79903 -37.38272 -35.86498 -33.73116 -32.53743 -32.47885 -31.79776 -31.68738 -31.00894 -27.83639 -27.09234 -26.62407 -24.84373 -23.77886 -23.67597 -23.17060 -22.33050 -22.06363 -21.38770 -20.67533 -19.27539 -18.92896 -17.95877 -17.67456 -17.28361 -17.16733 -17.00613 -16.89622 -16.33195 -16.23725 -16.05107 -15.63898 -15.54495 -15.27948 -15.24074 -15.20360 -14.92155 -14.81789 -14.52738 -14.28439 -14.14872 -13.92596 -13.70616 -13.50598 -13.47650 -13.25323 -13.17164 -12.99283 -12.80276 -12.61269 -12.55639 -12.20520 -12.13506 -12.04826 -11.96441 -11.94525 -11.71290 -11.60418 -11.34388 -11.18528 -11.00999 -10.70754 -10.29640 -10.06038 -9.96884 -9.94252 -9.27638 -4.92165 -0.29405 0.12673 0.19282 0.38875 1.28479 1.61348 1.64840 1.94362 1.98471 2.23565 2.65543 2.84692 3.36863 3.48791 3.51307 3.63584 3.65850 3.69986 3.75099 3.83266 3.88317 3.97079 4.03926 4.07038 4.09668 4.15313 4.16829 4.22335 4.24478 4.35612 4.40593 4.42086 4.47314 4.50348 4.53999 4.54548 4.65345 4.69342 4.75269 4.77412 4.86384 4.93702 4.96903 4.97139 5.05642 5.10105 5.15231 5.16016 5.20091 5.24489 5.27979 5.32028 5.35776 5.37020 5.37914 5.42765 5.43274 5.53818 5.70228 5.76138 6.35460 6.41040 6.43627 7.07839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 H 0.079 0.921 4 C -0.111 4.111 5 C -0.123 4.123 6 C 0.145 3.855 7 H 0.061 0.939 8 N -0.707 5.707 9 C 0.555 3.445 10 O -0.583 6.583 11 C -0.157 4.157 12 C -0.056 4.056 13 C -0.114 4.114 14 C 0.099 3.901 15 O -0.328 6.328 16 C 0.116 3.884 17 C -0.148 4.148 18 C -0.082 4.082 19 C -0.091 4.091 20 O -0.551 6.551 21 Si 0.782 3.218 22 C -0.158 4.158 23 C -0.073 4.073 24 C -0.207 4.207 25 C -0.068 4.068 26 C -0.125 4.125 27 C -0.069 4.069 28 C -0.118 4.118 29 C -0.111 4.111 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.415 0.585 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.386 0.614 44 H -0.281 1.281 45 H -0.303 1.303 46 H 0.149 0.851 47 H 0.158 0.842 48 H 0.148 0.852 49 H 0.152 0.848 50 H 0.166 0.834 51 H 0.159 0.841 52 H 0.088 0.912 53 H 0.074 0.926 54 H 0.080 0.920 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.541 7.590 0.407 8.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 H 0.098 0.902 4 C -0.149 4.149 5 C -0.162 4.162 6 C 0.041 3.959 7 H 0.079 0.921 8 N -0.359 5.359 9 C 0.344 3.656 10 O -0.464 6.464 11 C -0.160 4.160 12 C -0.075 4.075 13 C -0.114 4.114 14 C 0.025 3.975 15 O -0.243 6.243 16 C 0.070 3.930 17 C -0.166 4.166 18 C -0.082 4.082 19 C -0.199 4.199 20 O -0.359 6.359 21 Si 0.686 3.314 22 C -0.176 4.176 23 C -0.090 4.090 24 C -0.226 4.226 25 C -0.086 4.086 26 C -0.142 4.142 27 C -0.087 4.087 28 C -0.156 4.156 29 C -0.149 4.149 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.253 0.747 38 H 0.134 0.866 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.235 0.765 44 H -0.207 1.207 45 H -0.231 1.231 46 H 0.166 0.834 47 H 0.175 0.825 48 H 0.166 0.834 49 H 0.170 0.830 50 H 0.183 0.817 51 H 0.176 0.824 52 H 0.106 0.894 53 H 0.093 0.907 54 H 0.099 0.901 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.260 6.381 0.365 7.681 hybrid contribution -1.418 -0.184 0.038 1.431 sum 2.842 6.197 0.403 6.829 Atomic orbital electron populations 1.21834 0.94967 1.01737 1.02120 1.21157 0.95717 0.99852 0.94142 0.90228 1.21548 0.94079 1.00626 0.98644 1.21851 0.96438 1.00963 0.96950 1.21031 0.78497 0.99973 0.96420 0.92066 1.45892 1.07462 1.29997 1.52541 1.18597 0.87810 0.80975 0.78213 1.90765 1.70865 1.39255 1.45539 1.19905 0.92043 0.99759 1.04269 1.21159 0.93858 0.96522 0.95998 1.19529 0.92653 0.97273 1.01945 1.21742 1.00534 0.83641 0.91553 1.86131 1.71139 1.25771 1.41259 1.19192 0.93057 0.87760 0.92941 1.20301 1.03542 0.92380 1.00425 1.20151 0.97766 0.95315 0.95001 1.25430 0.91217 0.98225 1.05044 1.86570 1.30430 1.81108 1.37765 0.93914 0.86139 0.75906 0.75392 1.21184 1.02936 1.00254 0.93187 1.21288 0.95188 0.91626 1.00934 1.21582 1.04505 1.02288 0.94223 1.21662 1.01680 0.92477 0.92788 1.21537 0.93778 0.99532 0.99364 1.21697 0.95273 0.96267 0.95469 1.21785 0.96515 1.01582 0.95754 1.21564 0.94107 1.00887 0.98354 0.93166 0.92594 0.91982 0.91384 0.92906 0.93995 0.90355 0.74683 0.86586 0.90545 0.88369 0.86441 0.85878 0.76513 1.20726 1.23128 0.83426 0.82461 0.83405 0.83001 0.81671 0.82381 0.89377 0.90708 0.90118 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.29 9.19 71.98 0.66 0.95 16 2 C -0.09 0.20 2.72 -10.79 -0.03 0.17 16 3 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 4 C -0.11 -0.08 5.20 30.59 0.16 0.08 16 5 C -0.12 -0.24 5.49 30.60 0.17 -0.07 16 6 C 0.15 0.25 2.45 44.99 0.11 0.36 16 7 H 0.06 0.48 7.58 -2.39 -0.02 0.46 16 8 N -0.71 -0.53 5.03 -445.42 -2.24 -2.77 16 9 C 0.56 4.48 7.74 86.79 0.67 5.16 16 10 O -0.58 -10.11 16.01 -3.87 -0.06 -10.18 16 11 C -0.16 -0.69 5.87 -20.09 -0.12 -0.80 16 12 C -0.06 -0.36 9.24 22.53 0.21 -0.15 16 13 C -0.11 -0.25 5.50 -19.90 -0.11 -0.36 16 14 C 0.10 0.08 4.86 71.24 0.35 0.42 16 15 O -0.33 -2.21 10.12 -92.40 -0.94 -3.14 16 16 C 0.12 0.65 6.69 22.51 0.15 0.80 16 17 C -0.15 -0.97 9.55 22.37 0.21 -0.76 16 18 C -0.08 -0.23 5.39 -19.88 -0.11 -0.34 16 19 C -0.09 -0.16 2.82 71.23 0.20 0.04 16 20 O -0.55 -3.15 12.77 -148.98 -1.90 -5.05 16 21 Si 0.78 -0.99 29.78 68.60 2.04 1.05 16 22 C -0.16 0.08 8.67 22.28 0.19 0.28 16 23 C -0.07 0.11 10.04 22.25 0.22 0.33 16 24 C -0.21 -0.17 9.04 22.36 0.20 0.03 16 25 C -0.07 0.15 9.69 22.33 0.22 0.37 16 26 C -0.12 0.58 10.03 22.23 0.22 0.81 16 27 C -0.07 0.21 9.54 22.53 0.21 0.42 16 28 C -0.12 0.45 5.39 30.61 0.17 0.61 16 29 C -0.11 0.32 5.21 30.61 0.16 0.48 16 30 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 34 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.41 -2.62 6.64 -92.71 -0.62 -3.24 16 38 H 0.12 1.14 7.65 -2.91 -0.02 1.12 16 39 H 0.08 -0.02 7.60 -2.39 -0.02 -0.04 16 40 H 0.10 -0.42 7.61 -2.38 -0.02 -0.44 16 41 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16 42 H 0.12 0.06 7.96 -2.39 -0.02 0.04 16 43 H 0.39 0.06 8.70 -74.06 -0.64 -0.58 16 44 H -0.28 -0.61 7.11 99.48 0.71 0.09 16 45 H -0.30 -1.94 7.11 99.48 0.71 -1.23 16 46 H 0.15 -0.75 4.87 -2.91 -0.01 -0.76 16 47 H 0.16 -1.12 8.06 -2.91 -0.02 -1.15 16 48 H 0.15 -0.53 6.30 -2.91 -0.02 -0.55 16 49 H 0.15 -1.02 8.06 -2.91 -0.02 -1.04 16 50 H 0.17 -1.78 8.06 -2.91 -0.02 -1.81 16 51 H 0.16 -1.58 6.41 -2.91 -0.02 -1.59 16 52 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 53 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 54 H 0.08 -0.38 8.14 -2.38 -0.02 -0.39 16 55 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 Total: 0.00 -23.44 439.51 0.71 -22.73 By element: Atomic # 1 Polarization: -11.12 SS G_CDS: -0.32 Total: -11.44 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 4.12 Total: 8.80 kcal Atomic # 7 Polarization: -0.53 SS G_CDS: -2.24 Total: -2.77 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -2.90 Total: -18.37 kcal Atomic # 14 Polarization: -0.99 SS G_CDS: 2.04 Total: 1.05 kcal Total: -23.44 0.71 -22.73 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_4549630.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.867 kcal (2) G-P(sol) polarization free energy of solvation -23.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds