Wall clock time and date at job start Tue Mar 9 2021 14:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36547 * 126.64417 * 2 1 4 4 C 1.46658 * 125.99080 * 0.02562 * 3 2 1 5 5 O 1.21703 * 119.99538 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00378 * 180.02562 * 4 3 2 7 7 C 1.46498 * 120.00316 * 180.02562 * 6 4 3 8 8 H 1.09007 * 109.46750 * 324.99690 * 7 6 4 9 9 C 1.53002 * 109.47188 * 84.99508 * 7 6 4 10 10 C 1.53006 * 109.46781 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47074 * 299.99850 * 10 9 7 12 12 H 1.09005 * 109.47007 * 300.00693 * 11 10 9 13 13 C 1.53002 * 109.47027 * 180.02562 * 11 10 9 14 14 C 1.52995 * 109.47194 * 60.00121 * 11 10 9 15 15 C 1.53002 * 109.47337 * 300.00059 * 14 11 10 16 16 O 1.34913 * 108.02429 * 179.81251 * 3 2 1 17 17 C 1.33935 * 109.38410 * 0.37567 * 16 3 2 18 18 C 1.50699 * 125.61625 * 179.88907 * 17 16 3 19 19 O 1.42894 * 109.47024 * 269.68731 * 18 17 16 20 20 C 1.35905 * 117.00217 * 180.02562 * 19 18 17 21 21 C 1.38728 * 120.05539 * 180.02562 * 20 19 18 22 22 C 1.38153 * 119.93918 * 180.02562 * 21 20 19 23 23 C 1.38260 * 120.05718 * 0.02562 * 22 21 20 24 24 C 1.50696 * 119.94431 * 179.97438 * 23 22 21 25 25 O 1.42903 * 109.47278 * 300.00307 * 24 23 22 26 26 Si 1.86300 * 109.47355 * 180.02562 * 24 23 22 27 27 C 1.38268 * 120.11273 * 0.25759 * 23 22 21 28 28 C 1.38148 * 120.05255 * 359.44588 * 27 23 22 29 29 C 1.35129 * 108.76341 * 359.62114 * 17 16 3 30 30 H 1.09007 * 109.46941 * 269.98148 * 1 2 3 31 31 H 1.09000 * 109.47238 * 29.97878 * 1 2 3 32 32 H 1.09001 * 109.47573 * 149.98157 * 1 2 3 33 33 H 0.97001 * 119.99981 * 359.97438 * 6 4 3 34 34 H 1.08995 * 109.47050 * 300.00041 * 9 7 6 35 35 H 1.08999 * 109.46886 * 60.00611 * 9 7 6 36 36 H 1.09000 * 109.46572 * 180.02562 * 10 9 7 37 37 H 1.08993 * 109.47128 * 59.99989 * 10 9 7 38 38 H 1.08993 * 109.46850 * 299.99940 * 13 11 10 39 39 H 1.09000 * 109.46897 * 60.00116 * 13 11 10 40 40 H 1.09003 * 109.46685 * 179.97438 * 13 11 10 41 41 H 1.08997 * 109.47399 * 179.97438 * 14 11 10 42 42 H 1.09007 * 109.46896 * 59.99871 * 14 11 10 43 43 H 1.08992 * 109.47368 * 299.99945 * 15 14 11 44 44 H 1.09005 * 109.47303 * 179.97438 * 15 14 11 45 45 H 1.09003 * 109.46733 * 149.68740 * 18 17 16 46 46 H 1.08997 * 109.47329 * 29.68875 * 18 17 16 47 47 H 1.07999 * 120.03497 * 359.97438 * 21 20 19 48 48 H 1.08000 * 119.96925 * 179.97438 * 22 21 20 49 49 H 1.08997 * 109.47214 * 60.00282 * 24 23 22 50 50 H 0.96700 * 114.00022 * 180.02562 * 25 24 23 51 51 H 1.48506 * 110.00048 * 298.68478 * 26 24 23 52 52 H 1.48502 * 109.99996 * 59.99803 * 26 24 23 53 53 H 1.07998 * 119.97204 * 179.70510 * 27 23 22 54 54 H 1.08006 * 120.02667 * 180.25271 * 28 27 23 55 55 H 1.08005 * 126.44241 * 180.26334 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3220 1.0956 0.0000 4 6 1.8842 2.4953 0.0005 5 8 0.6967 2.7615 0.0006 6 7 2.7970 3.4869 -0.0001 7 6 2.3598 4.8851 0.0010 8 1 1.4472 4.9808 -0.5874 9 6 2.0890 5.3337 1.4386 10 6 1.6318 6.7938 1.4395 11 6 2.7263 7.6714 0.8290 12 1 3.6389 7.5760 1.4173 13 6 2.2693 9.1316 0.8305 14 6 2.9970 7.2228 -0.6085 15 6 3.4543 5.7627 -0.6095 16 8 3.6005 0.6648 0.0042 17 6 3.6184 -0.6744 -0.0014 18 6 4.8551 -1.5355 -0.0016 19 8 5.2455 -1.8080 -1.3489 20 6 6.3508 -2.5785 -1.5272 21 6 6.7867 -2.8820 -2.8088 22 6 7.9103 -3.6658 -2.9873 23 6 8.5997 -4.1480 -1.8901 24 6 9.8247 -5.0032 -2.0877 25 8 9.4717 -6.1793 -2.8187 26 14 10.5174 -5.4890 -0.4280 27 6 8.1638 -3.8517 -0.6118 28 6 7.0444 -3.0632 -0.4280 29 6 2.3448 -1.1261 -0.0009 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5141 33 1 3.7436 3.2748 -0.0005 34 1 1.3090 4.7087 1.8734 35 1 3.0016 5.2380 2.0269 36 1 1.4393 7.1135 2.4637 37 1 0.7192 6.8891 0.8512 38 1 1.3566 9.2272 0.2424 39 1 2.0767 9.4509 1.8548 40 1 3.0492 9.7568 0.3959 41 1 3.7765 7.8483 -1.0436 42 1 2.0844 7.3182 -1.1968 43 1 4.3668 5.6673 -0.0212 44 1 3.6468 5.4430 -1.6337 45 1 4.6447 -2.4734 0.5125 46 1 5.6620 -1.0127 0.5118 47 1 6.2478 -2.5067 -3.6662 48 1 8.2499 -3.9028 -3.9847 49 1 10.5744 -4.4409 -2.6443 50 1 10.2132 -6.7779 -2.9827 51 1 10.9178 -4.2763 0.3300 52 1 9.5044 -6.2565 0.3403 53 1 8.7014 -4.2334 0.2436 54 1 6.7067 -2.8287 0.5707 55 1 2.0306 -2.1594 -0.0006 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_4549632.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:35:22 Heat of formation + Delta-G solvation = -72.143405 kcal Electronic energy + Delta-G solvation = -34733.864861 eV Core-core repulsion = 30089.888395 eV Total energy + Delta-G solvation = -4643.976466 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.197 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -44.01813 -41.42389 -41.11607 -39.39074 -39.20916 -37.25044 -36.08860 -35.16527 -33.41957 -32.42821 -32.08018 -31.81958 -31.62568 -28.98459 -28.50187 -26.67698 -26.15612 -24.30575 -23.82463 -23.14002 -22.72844 -22.21298 -21.90147 -21.18085 -20.60889 -19.61237 -19.27806 -18.37450 -17.84508 -17.56734 -17.53487 -17.00355 -16.77943 -16.54262 -16.21103 -15.83998 -15.73039 -15.44485 -15.27556 -15.23646 -15.22288 -14.86986 -14.56391 -14.38724 -14.29674 -14.13032 -14.08503 -13.92807 -13.83020 -13.67143 -13.58157 -13.45264 -13.27268 -13.18906 -12.91340 -12.59028 -12.52945 -12.21719 -12.15051 -12.07399 -11.99630 -11.87267 -11.76638 -11.39658 -11.24787 -11.12282 -10.88390 -10.34366 -10.29968 -10.18380 -9.78434 -9.33872 -4.93358 -0.34042 0.11437 0.16856 0.88709 1.26715 1.32063 1.64239 1.89329 1.90872 1.96629 2.26614 2.50315 3.19501 3.41869 3.52529 3.55606 3.57811 3.62295 3.67320 3.73022 3.85250 3.89769 3.94547 3.98171 4.03933 4.12760 4.14313 4.21606 4.31542 4.32944 4.38701 4.38871 4.42088 4.47464 4.51119 4.53615 4.59572 4.66838 4.73534 4.74760 4.80874 4.89927 4.91227 4.94044 5.00287 5.03156 5.03254 5.08228 5.08801 5.14149 5.16414 5.22072 5.31433 5.36307 5.36846 5.38456 5.52192 5.55578 5.60958 6.14640 6.26315 6.85409 6.92674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.095 4.095 3 C -0.093 4.093 4 C 0.602 3.398 5 O -0.544 6.544 6 N -0.706 5.706 7 C 0.146 3.854 8 H 0.073 0.927 9 C -0.124 4.124 10 C -0.109 4.109 11 C -0.092 4.092 12 H 0.075 0.925 13 C -0.148 4.148 14 C -0.109 4.109 15 C -0.120 4.120 16 O -0.160 6.160 17 C 0.009 3.991 18 C 0.136 3.864 19 O -0.322 6.322 20 C 0.125 3.875 21 C -0.156 4.156 22 C -0.056 4.056 23 C -0.128 4.128 24 C -0.075 4.075 25 O -0.565 6.565 26 Si 0.770 3.230 27 C -0.100 4.100 28 C -0.203 4.203 29 C -0.185 4.185 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.414 0.586 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.126 0.874 46 H 0.101 0.899 47 H 0.142 0.858 48 H 0.147 0.853 49 H 0.094 0.906 50 H 0.403 0.597 51 H -0.287 1.287 52 H -0.297 1.297 53 H 0.122 0.878 54 H 0.155 0.845 55 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.263 -1.484 0.588 7.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.145 4.145 4 C 0.389 3.611 5 O -0.424 6.424 6 N -0.356 5.356 7 C 0.042 3.958 8 H 0.091 0.909 9 C -0.163 4.163 10 C -0.147 4.147 11 C -0.110 4.110 12 H 0.094 0.906 13 C -0.206 4.206 14 C -0.147 4.147 15 C -0.158 4.158 16 O -0.057 6.057 17 C -0.043 4.043 18 C 0.062 3.938 19 O -0.236 6.236 20 C 0.080 3.920 21 C -0.174 4.174 22 C -0.073 4.073 23 C -0.129 4.129 24 C -0.185 4.185 25 O -0.375 6.375 26 Si 0.676 3.324 27 C -0.118 4.118 28 C -0.221 4.221 29 C -0.204 4.204 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.250 0.750 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.144 0.856 46 H 0.119 0.881 47 H 0.160 0.840 48 H 0.165 0.835 49 H 0.112 0.888 50 H 0.254 0.746 51 H -0.215 1.215 52 H -0.225 1.225 53 H 0.140 0.860 54 H 0.173 0.827 55 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 5.901 -0.631 1.320 6.079 hybrid contribution -0.257 0.134 0.007 0.290 sum 5.643 -0.497 1.327 5.818 Atomic orbital electron populations 1.20455 0.87311 1.03887 1.03423 1.20977 0.98504 0.91206 0.99109 1.21913 0.81660 0.94966 1.15962 1.16612 0.85681 0.82270 0.76523 1.90854 1.16791 1.82704 1.52027 1.45973 1.10075 1.06055 1.73490 1.21131 0.98837 0.78611 0.97209 0.90872 1.21867 1.01572 0.96933 0.95932 1.21541 0.98519 0.93235 1.01446 1.21168 0.98583 0.94914 0.96361 0.90633 1.21825 1.01425 0.95400 1.01930 1.21545 1.01956 0.94584 0.96654 1.21781 0.97597 0.94919 1.01524 1.83957 1.28137 1.22465 1.71099 1.22317 0.96812 0.80339 1.04794 1.21216 0.91819 0.98062 0.82743 1.86112 1.42103 1.66275 1.29133 1.19040 0.86536 0.91827 0.94554 1.20743 0.98900 1.02374 0.95399 1.21018 0.92975 0.93725 0.99633 1.19675 0.98875 1.00978 0.93334 1.24755 0.96692 0.88534 1.08477 1.86440 1.40756 1.33067 1.77237 0.94363 0.83824 0.80868 0.73303 1.20848 0.96459 0.98154 0.96301 1.21374 0.98263 1.03251 0.99230 1.21886 0.90860 1.01269 1.06419 0.90078 0.91099 0.89416 0.74998 0.93362 0.90894 0.91280 0.92300 0.92868 0.92584 0.92122 0.90270 0.91999 0.90022 0.90847 0.85606 0.88058 0.83995 0.83514 0.88847 0.74589 1.21462 1.22533 0.86033 0.82720 0.79973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.44 9.82 71.24 0.70 0.26 16 2 C -0.10 -0.62 6.20 -19.74 -0.12 -0.74 16 3 C -0.09 -0.72 7.13 24.07 0.17 -0.55 16 4 C 0.60 5.32 7.75 86.44 0.67 5.99 16 5 O -0.54 -7.77 14.40 -4.36 -0.06 -7.84 16 6 N -0.71 -2.18 5.07 -446.51 -2.27 -4.45 16 7 C 0.15 0.29 2.45 44.99 0.11 0.40 16 8 H 0.07 0.45 7.58 -2.38 -0.02 0.43 16 9 C -0.12 -0.23 5.50 30.60 0.17 -0.07 16 10 C -0.11 -0.02 5.20 30.60 0.16 0.14 16 11 C -0.09 0.19 2.72 -10.79 -0.03 0.16 16 12 H 0.08 -0.19 8.14 -2.38 -0.02 -0.21 16 13 C -0.15 0.31 9.19 71.98 0.66 0.97 16 14 C -0.11 0.28 5.20 30.59 0.16 0.44 16 15 C -0.12 0.29 5.39 30.60 0.17 0.46 16 16 O -0.16 -0.88 10.40 -5.07 -0.05 -0.93 16 17 C 0.01 0.03 6.94 24.97 0.17 0.20 16 18 C 0.14 -0.24 5.27 71.24 0.38 0.14 16 19 O -0.32 -1.23 10.12 -92.48 -0.94 -2.17 16 20 C 0.13 0.50 6.69 22.50 0.15 0.65 16 21 C -0.16 -0.63 9.99 22.37 0.22 -0.41 16 22 C -0.06 -0.19 9.60 22.25 0.21 0.02 16 23 C -0.13 -0.50 5.42 -19.85 -0.11 -0.61 16 24 C -0.07 0.10 2.81 71.23 0.20 0.30 16 25 O -0.57 0.55 12.74 -148.98 -1.90 -1.35 16 26 Si 0.77 -2.16 29.78 68.60 2.04 -0.12 16 27 C -0.10 -0.40 8.66 22.26 0.19 -0.21 16 28 C -0.20 -0.41 9.04 22.37 0.20 -0.21 16 29 C -0.19 -0.50 10.72 22.07 0.24 -0.26 16 30 H 0.08 0.29 8.14 -2.38 -0.02 0.27 16 31 H 0.07 0.61 6.44 -2.39 -0.02 0.60 16 32 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.41 -0.33 8.36 -92.71 -0.77 -1.11 16 34 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 41 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.06 -0.08 8.14 -2.38 -0.02 -0.10 16 43 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 44 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 45 H 0.13 -0.86 7.66 -2.39 -0.02 -0.87 16 46 H 0.10 -0.50 7.67 -2.39 -0.02 -0.52 16 47 H 0.14 0.28 8.06 -2.91 -0.02 0.26 16 48 H 0.15 0.06 8.06 -2.91 -0.02 0.04 16 49 H 0.09 -0.50 7.96 -2.39 -0.02 -0.51 16 50 H 0.40 -4.60 8.74 -74.06 -0.65 -5.25 16 51 H -0.29 -0.65 7.11 99.48 0.71 0.06 16 52 H -0.30 -1.41 7.11 99.48 0.71 -0.71 16 53 H 0.12 0.35 4.87 -2.91 -0.01 0.33 16 54 H 0.16 -0.58 6.30 -2.91 -0.02 -0.59 16 55 H 0.18 -0.45 8.06 -2.91 -0.02 -0.48 16 Total: 0.00 -20.10 442.18 1.03 -19.07 By element: Atomic # 1 Polarization: -8.82 SS G_CDS: -0.47 Total: -9.29 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 4.67 Total: 7.07 kcal Atomic # 7 Polarization: -2.18 SS G_CDS: -2.27 Total: -4.45 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -2.95 Total: -12.28 kcal Atomic # 14 Polarization: -2.16 SS G_CDS: 2.04 Total: -0.12 kcal Total: -20.10 1.03 -19.07 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_4549632.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.069 kcal (2) G-P(sol) polarization free energy of solvation -20.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds