Wall clock time and date at job start Tue Mar 9 2021 14:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47800 * 2 1 4 4 C 1.53005 * 109.46633 * 120.00201 * 2 1 3 5 5 C 1.53006 * 109.46930 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46828 * 299.99538 * 5 4 2 7 7 H 1.08999 * 109.47687 * 300.00540 * 6 5 4 8 8 N 1.46504 * 109.46965 * 179.97438 * 6 5 4 9 9 C 1.34778 * 119.99669 * 85.00553 * 8 6 5 10 10 O 1.21555 * 119.99865 * 359.97438 * 9 8 6 11 11 C 1.47847 * 119.99660 * 180.02562 * 9 8 6 12 12 C 1.39557 * 120.13984 * 180.29452 * 11 9 8 13 13 C 1.50707 * 120.07804 * 359.97438 * 12 11 9 14 14 O 1.42897 * 109.46930 * 180.29390 * 13 12 11 15 15 C 1.35907 * 116.99521 * 180.02562 * 14 13 12 16 16 C 1.38712 * 120.05367 * 179.73094 * 15 14 13 17 17 C 1.38160 * 119.94162 * 179.71947 * 16 15 14 18 18 C 1.50702 * 119.97112 * 180.26818 * 17 16 15 19 19 O 1.42898 * 109.47451 * 300.30032 * 18 17 16 20 20 Si 1.86301 * 109.47053 * 180.29810 * 18 17 16 21 21 C 1.38242 * 120.05792 * 0.57158 * 17 16 15 22 22 C 1.38293 * 120.11035 * 359.68004 * 21 17 16 23 23 C 1.38118 * 120.05254 * 0.04389 * 22 21 17 24 24 C 1.37979 * 119.85105 * 180.29480 * 12 11 9 25 25 C 1.38338 * 120.14357 * 359.42390 * 24 12 11 26 26 C 1.38385 * 120.29391 * 0.26057 * 25 24 12 27 27 C 1.37934 * 120.14163 * 0.03754 * 26 25 24 28 28 C 1.53009 * 109.47310 * 60.00370 * 6 5 4 29 29 C 1.52999 * 109.46858 * 239.99577 * 2 1 3 30 30 H 1.08994 * 109.47800 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46742 * 300.00451 * 1 2 3 32 32 H 1.09000 * 109.46773 * 60.00076 * 1 2 3 33 33 H 1.08998 * 109.47024 * 299.99176 * 4 2 1 34 34 H 1.08999 * 109.47605 * 59.99624 * 4 2 1 35 35 H 1.09000 * 109.47069 * 179.97438 * 5 4 2 36 36 H 1.08999 * 109.47166 * 59.99499 * 5 4 2 37 37 H 0.96997 * 120.00084 * 264.99859 * 8 6 5 38 38 H 1.08991 * 109.47113 * 300.29823 * 13 12 11 39 39 H 1.09000 * 109.46335 * 60.29994 * 13 12 11 40 40 H 1.08001 * 120.02609 * 359.97438 * 16 15 14 41 41 H 1.09006 * 109.46847 * 60.30228 * 18 17 16 42 42 H 0.96706 * 113.99925 * 180.02562 * 19 18 17 43 43 H 1.48502 * 110.00219 * 60.00560 * 20 18 17 44 44 H 1.48504 * 110.00139 * 181.32279 * 20 18 17 45 45 H 1.07998 * 119.94832 * 179.69902 * 21 17 16 46 46 H 1.08001 * 119.97023 * 180.02562 * 22 21 17 47 47 H 1.08007 * 120.02890 * 180.02562 * 23 22 21 48 48 H 1.08002 * 119.93210 * 179.70859 * 24 12 11 49 49 H 1.08001 * 119.85534 * 180.27735 * 25 24 12 50 50 H 1.07997 * 119.93211 * 180.02562 * 26 25 24 51 51 H 1.08004 * 120.07161 * 179.97438 * 27 26 25 52 52 H 1.09004 * 109.47020 * 59.99311 * 28 6 5 53 53 H 1.08998 * 109.47346 * 180.02562 * 28 6 5 54 54 H 1.09000 * 109.47145 * 60.00575 * 29 2 1 55 55 H 1.09004 * 109.47641 * 300.00406 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5700 -0.7219 1.2490 6 6 4.0794 -1.4436 -0.0002 7 1 3.7156 -2.4711 0.0000 8 7 5.5444 -1.4437 -0.0007 9 6 6.2185 -2.3997 0.6687 10 8 5.6108 -3.2615 1.2733 11 6 7.6970 -2.3994 0.6686 12 6 8.3979 -3.3915 1.3557 13 6 7.6496 -4.4666 2.1010 14 8 8.5826 -5.3525 2.7229 15 6 8.0681 -6.3861 3.4398 16 6 8.9164 -7.2878 4.0654 17 6 8.3909 -8.3344 4.7985 18 6 9.3119 -9.3110 5.4834 19 8 10.1417 -9.9469 4.5092 20 14 8.3011 -10.5982 6.3735 21 6 7.0209 -8.4902 4.8990 22 6 6.1731 -7.5956 4.2719 23 6 6.6935 -6.5444 3.5426 24 6 9.7777 -3.3820 1.3567 25 6 10.4662 -2.3989 0.6687 26 6 9.7771 -1.4161 -0.0201 27 6 8.3978 -1.4106 -0.0240 28 6 3.5695 -0.7224 -1.2495 29 6 2.0399 -0.7213 -1.2492 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6766 -0.2074 2.1392 34 1 1.6765 -1.7490 1.2493 35 1 3.9332 -1.2354 2.1393 36 1 3.9337 0.3056 1.2488 37 1 6.0293 -0.7558 -0.4830 38 1 7.0196 -4.0087 2.8635 39 1 7.0270 -5.0262 1.4030 40 1 9.9867 -7.1695 3.9830 41 1 9.9364 -8.7791 6.2012 42 1 10.7611 -10.5904 4.8799 43 1 7.4452 -11.3304 5.4059 44 1 9.1973 -11.5488 7.0796 45 1 6.6121 -9.3118 5.4684 46 1 5.1032 -7.7192 4.3522 47 1 6.0310 -5.8456 3.0534 48 1 10.3215 -4.1464 1.8920 49 1 11.5462 -2.3986 0.6689 50 1 10.3205 -0.6517 -0.5555 51 1 7.8612 -0.6428 -0.5616 52 1 3.9332 0.3052 -1.2497 53 1 3.9321 -1.2368 -2.1395 54 1 1.6767 -0.2075 -2.1392 55 1 1.6766 -1.7490 -1.2492 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_4557126.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:35:39 Heat of formation + Delta-G solvation = -57.664207 kcal Electronic energy + Delta-G solvation = -34776.658222 eV Core-core repulsion = 30323.765673 eV Total energy + Delta-G solvation = -4452.892549 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.198 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.83942 -41.18476 -40.09492 -39.11805 -38.81967 -37.46576 -35.88226 -33.35654 -33.01380 -32.63741 -31.77625 -31.40933 -31.04414 -28.01420 -27.01474 -26.53067 -24.78923 -23.78216 -23.65153 -23.22308 -22.18596 -21.75365 -21.48482 -20.74307 -18.98876 -18.91402 -18.57202 -17.54132 -17.47827 -17.28952 -17.18693 -16.59471 -16.28877 -16.10505 -15.95081 -15.64281 -15.48582 -15.48071 -15.22178 -15.19629 -14.66027 -14.59732 -14.53391 -14.32534 -14.08533 -13.95070 -13.69287 -13.57640 -13.44901 -13.27449 -13.23018 -13.15032 -12.78668 -12.55937 -12.47980 -12.22897 -12.20960 -12.10708 -12.07293 -11.92686 -11.75590 -11.63691 -11.29869 -11.13769 -10.85710 -10.59158 -10.27091 -9.99067 -9.94384 -9.82530 -9.30577 -4.92302 -0.27542 0.15733 0.24978 0.35131 1.27075 1.60162 1.75769 1.91681 2.00871 2.01635 2.58867 2.72222 3.33278 3.50823 3.53882 3.65805 3.72180 3.75929 3.79473 3.83367 3.91393 4.02766 4.07655 4.08969 4.15089 4.17395 4.22295 4.22879 4.29596 4.36412 4.40589 4.41450 4.43643 4.48556 4.52506 4.56082 4.62905 4.71717 4.77103 4.79164 4.89903 4.93393 4.95332 4.98884 5.08099 5.12906 5.16964 5.17658 5.20864 5.22492 5.32540 5.33606 5.34908 5.39970 5.41323 5.42553 5.45765 5.55689 5.67568 5.81216 6.29587 6.42519 6.57070 7.08114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 H 0.077 0.923 4 C -0.110 4.110 5 C -0.123 4.123 6 C 0.148 3.852 7 H 0.066 0.934 8 N -0.708 5.708 9 C 0.555 3.445 10 O -0.570 6.570 11 C -0.148 4.148 12 C -0.053 4.053 13 C 0.118 3.882 14 O -0.327 6.327 15 C 0.116 3.884 16 C -0.141 4.141 17 C -0.047 4.047 18 C -0.091 4.091 19 O -0.559 6.559 20 Si 0.773 3.227 21 C -0.157 4.157 22 C -0.074 4.074 23 C -0.211 4.211 24 C -0.123 4.123 25 C -0.089 4.089 26 C -0.123 4.123 27 C -0.077 4.077 28 C -0.119 4.119 29 C -0.111 4.111 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.414 0.586 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.128 0.872 41 H 0.097 0.903 42 H 0.396 0.604 43 H -0.298 1.298 44 H -0.282 1.282 45 H 0.149 0.851 46 H 0.154 0.846 47 H 0.133 0.867 48 H 0.132 0.868 49 H 0.152 0.848 50 H 0.163 0.837 51 H 0.160 0.840 52 H 0.085 0.915 53 H 0.074 0.926 54 H 0.078 0.922 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.177 6.220 -0.948 6.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 H 0.095 0.905 4 C -0.148 4.148 5 C -0.162 4.162 6 C 0.043 3.957 7 H 0.084 0.916 8 N -0.359 5.359 9 C 0.343 3.657 10 O -0.451 6.451 11 C -0.151 4.151 12 C -0.054 4.054 13 C 0.044 3.956 14 O -0.241 6.241 15 C 0.071 3.929 16 C -0.159 4.159 17 C -0.047 4.047 18 C -0.199 4.199 19 O -0.369 6.369 20 Si 0.678 3.322 21 C -0.175 4.175 22 C -0.092 4.092 23 C -0.230 4.230 24 C -0.141 4.141 25 C -0.107 4.107 26 C -0.140 4.140 27 C -0.095 4.095 28 C -0.157 4.157 29 C -0.149 4.149 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.252 0.748 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.146 0.854 41 H 0.115 0.885 42 H 0.246 0.754 43 H -0.226 1.226 44 H -0.209 1.209 45 H 0.166 0.834 46 H 0.172 0.828 47 H 0.151 0.849 48 H 0.150 0.850 49 H 0.170 0.830 50 H 0.180 0.820 51 H 0.178 0.822 52 H 0.104 0.896 53 H 0.093 0.907 54 H 0.097 0.903 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.943 5.239 -0.898 5.399 hybrid contribution 1.094 -0.348 -0.634 1.311 sum 0.151 4.891 -1.532 5.128 Atomic orbital electron populations 1.21834 0.95021 1.01774 1.02046 1.21158 0.95678 0.99801 0.94283 0.90450 1.21541 0.94148 1.00684 0.98465 1.21852 0.96352 1.00886 0.97120 1.21016 0.78367 1.00121 0.96158 0.91576 1.45891 1.07481 1.30007 1.52530 1.18492 0.87399 0.81249 0.78527 1.90735 1.70658 1.38764 1.44959 1.19689 0.92259 0.98993 1.04176 1.19713 0.94615 0.94411 0.96668 1.21496 0.89330 0.88868 0.95930 1.85927 1.36793 1.37473 1.63912 1.19143 0.92540 0.88364 0.92835 1.20305 0.99815 0.95090 1.00732 1.19317 0.93869 0.94338 0.97174 1.25138 0.98211 1.01524 0.94979 1.86554 1.54117 1.60091 1.36117 0.93981 0.79932 0.77103 0.81222 1.21126 0.92226 1.01336 1.02781 1.21216 1.01315 0.92454 0.94199 1.21538 0.93769 1.02401 1.05309 1.21121 0.92835 1.00013 1.00149 1.21769 1.01827 0.92977 0.94175 1.21576 0.93925 0.99347 0.99180 1.21588 0.95178 0.96516 0.96256 1.21770 0.96485 1.01528 0.95951 1.21541 0.94161 1.00920 0.98249 0.93053 0.92659 0.92096 0.91527 0.92677 0.93702 0.90696 0.74824 0.90411 0.90831 0.85364 0.88513 0.75361 1.22574 1.20863 0.83400 0.82787 0.84906 0.85002 0.83017 0.81986 0.82237 0.89640 0.90696 0.90320 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.39 9.19 71.98 0.66 1.05 16 2 C -0.09 0.27 2.72 -10.79 -0.03 0.24 16 3 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 4 C -0.11 0.06 5.20 30.60 0.16 0.22 16 5 C -0.12 -0.05 5.49 30.60 0.17 0.11 16 6 C 0.15 -0.03 2.45 44.99 0.11 0.08 16 7 H 0.07 0.34 7.58 -2.39 -0.02 0.32 16 8 N -0.71 0.68 5.03 -445.38 -2.24 -1.56 16 9 C 0.55 3.10 7.72 86.79 0.67 3.77 16 10 O -0.57 -6.97 13.07 -3.89 -0.05 -7.02 16 11 C -0.15 -0.57 5.87 -20.09 -0.12 -0.68 16 12 C -0.05 -0.38 5.91 -19.61 -0.12 -0.50 16 13 C 0.12 1.17 3.38 71.24 0.24 1.42 16 14 O -0.33 -3.73 8.62 -92.50 -0.80 -4.53 16 15 C 0.12 1.30 6.69 22.51 0.15 1.45 16 16 C -0.14 -1.41 9.55 22.36 0.21 -1.20 16 17 C -0.05 -0.33 5.42 -19.88 -0.11 -0.44 16 18 C -0.09 -0.23 2.81 71.24 0.20 -0.03 16 19 O -0.56 -2.92 12.74 -148.98 -1.90 -4.82 16 20 Si 0.77 -0.20 29.79 68.60 2.04 1.84 16 21 C -0.16 -0.75 8.67 22.28 0.19 -0.56 16 22 C -0.07 -0.39 10.04 22.25 0.22 -0.17 16 23 C -0.21 -1.90 9.04 22.36 0.20 -1.70 16 24 C -0.12 -0.57 9.37 22.23 0.21 -0.36 16 25 C -0.09 0.08 10.04 22.33 0.22 0.30 16 26 C -0.12 0.47 10.03 22.23 0.22 0.70 16 27 C -0.08 0.22 9.54 22.52 0.21 0.43 16 28 C -0.12 0.58 5.39 30.58 0.16 0.75 16 29 C -0.11 0.42 5.20 30.58 0.16 0.58 16 30 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.06 -0.21 8.14 -2.39 -0.02 -0.22 16 33 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 35 H 0.04 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.07 -0.13 8.14 -2.39 -0.02 -0.14 16 37 H 0.41 -3.01 6.64 -92.71 -0.62 -3.63 16 38 H 0.08 0.88 6.84 -2.39 -0.02 0.87 16 39 H 0.07 0.88 6.89 -2.39 -0.02 0.86 16 40 H 0.13 1.22 8.06 -2.91 -0.02 1.20 16 41 H 0.10 -0.15 7.96 -2.38 -0.02 -0.16 16 42 H 0.40 -1.40 8.74 -74.05 -0.65 -2.05 16 43 H -0.30 -2.10 7.11 99.48 0.71 -1.39 16 44 H -0.28 -0.86 7.11 99.48 0.71 -0.15 16 45 H 0.15 -0.03 4.87 -2.91 -0.01 -0.05 16 46 H 0.15 -0.03 8.06 -2.91 -0.02 -0.05 16 47 H 0.13 1.18 6.30 -2.91 -0.02 1.16 16 48 H 0.13 0.72 7.00 -2.91 -0.02 0.70 16 49 H 0.15 -0.84 8.06 -2.91 -0.02 -0.86 16 50 H 0.16 -1.60 8.06 -2.91 -0.02 -1.62 16 51 H 0.16 -1.60 6.41 -2.91 -0.02 -1.62 16 52 H 0.09 -0.65 8.14 -2.38 -0.02 -0.67 16 53 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 54 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 55 H 0.06 -0.11 8.14 -2.38 -0.02 -0.13 16 Total: 0.00 -20.18 432.36 0.76 -19.43 By element: Atomic # 1 Polarization: -8.50 SS G_CDS: -0.32 Total: -8.82 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 4.02 Total: 5.47 kcal Atomic # 7 Polarization: 0.68 SS G_CDS: -2.24 Total: -1.56 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -2.75 Total: -16.37 kcal Atomic # 14 Polarization: -0.20 SS G_CDS: 2.04 Total: 1.84 kcal Total: -20.18 0.76 -19.43 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_4557126.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.237 kcal (2) G-P(sol) polarization free energy of solvation -20.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds