Wall clock time and date at job start Tue Mar 9 2021 14:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35981 * 117.00011 * 2 1 4 4 C 1.38676 * 119.99859 * 180.02562 * 3 2 1 5 5 C 1.38152 * 119.99754 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.99818 * 180.02562 * 5 4 3 7 7 O 1.42899 * 109.47249 * 104.97435 * 6 5 4 8 8 Si 1.86305 * 109.47107 * 344.97332 * 6 5 4 9 9 C 1.38674 * 120.00484 * 359.97438 * 5 4 3 10 10 O 1.35978 * 120.00601 * 180.02562 * 9 5 4 11 11 C 1.42895 * 117.00416 * 180.02562 * 10 9 5 12 12 C 1.50703 * 109.47270 * 180.02562 * 11 10 9 13 13 O 1.21279 * 120.00024 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99935 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99771 * 179.97438 * 14 12 11 16 16 H 1.08992 * 109.47397 * 325.00275 * 15 14 12 17 17 C 1.53002 * 109.46799 * 85.00174 * 15 14 12 18 18 C 1.52997 * 109.46817 * 179.97438 * 17 15 14 19 19 C 1.53005 * 109.47452 * 300.00239 * 18 17 15 20 20 H 1.09002 * 109.46935 * 300.00125 * 19 18 17 21 21 C 1.53002 * 109.47197 * 180.02562 * 19 18 17 22 22 C 1.52999 * 109.47159 * 59.99536 * 19 18 17 23 23 C 1.52997 * 109.47317 * 300.00546 * 22 19 18 24 24 C 1.38725 * 119.99574 * 0.27899 * 9 5 4 25 25 C 1.38111 * 119.99791 * 359.44391 * 24 9 5 26 26 H 1.08998 * 109.46883 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46889 * 299.99821 * 1 2 3 28 28 H 1.09001 * 109.46741 * 59.99665 * 1 2 3 29 29 H 1.08003 * 119.99929 * 359.97438 * 4 3 2 30 30 H 1.09001 * 109.47188 * 224.97573 * 6 5 4 31 31 H 0.96701 * 113.99607 * 60.00338 * 7 6 5 32 32 H 1.48500 * 109.99974 * 178.67985 * 8 6 5 33 33 H 1.48497 * 110.00083 * 300.00292 * 8 6 5 34 34 H 1.08995 * 109.47296 * 60.00058 * 11 10 9 35 35 H 1.08999 * 109.47100 * 300.00182 * 11 10 9 36 36 H 0.97006 * 119.99662 * 0.02562 * 14 12 11 37 37 H 1.08993 * 109.47662 * 299.99952 * 17 15 14 38 38 H 1.09002 * 109.47075 * 60.00457 * 17 15 14 39 39 H 1.09002 * 109.47153 * 60.00231 * 18 17 15 40 40 H 1.09001 * 109.47289 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.47142 * 59.99766 * 21 19 18 42 42 H 1.08996 * 109.46698 * 179.97438 * 21 19 18 43 43 H 1.09002 * 109.46838 * 299.99316 * 21 19 18 44 44 H 1.08996 * 109.46929 * 179.97438 * 22 19 18 45 45 H 1.09002 * 109.46716 * 60.00455 * 22 19 18 46 46 H 1.09002 * 109.47153 * 299.99641 * 23 22 19 47 47 H 1.09001 * 109.46832 * 179.97438 * 23 22 19 48 48 H 1.07999 * 119.99968 * 179.70497 * 24 9 5 49 49 H 1.07998 * 119.99859 * 180.30167 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4313 1.2841 -0.0005 5 6 4.0585 2.5151 0.0000 6 6 5.5634 2.5939 -0.0012 7 8 6.0199 2.9676 -1.3027 8 14 6.2727 0.9319 0.4522 9 6 3.3033 3.6782 0.0005 10 8 3.9206 4.8898 0.0005 11 6 3.0807 6.0458 0.0017 12 6 3.9349 7.2874 0.0009 13 8 5.1439 7.1916 -0.0010 14 7 3.3553 8.5042 0.0012 15 6 4.1857 9.7110 0.0010 16 1 5.0854 9.5332 0.5899 17 6 4.5778 10.0600 -1.4362 18 6 5.4445 11.3208 -1.4365 19 6 4.6563 12.4818 -0.8266 20 1 3.7566 12.6593 -1.4157 21 6 5.5229 13.7427 -0.8275 22 6 4.2642 12.1327 0.6105 23 6 3.3975 10.8719 0.6108 24 6 1.9179 3.6056 0.0064 25 6 1.2910 2.3750 0.0001 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.0195 0.3783 -0.0005 30 1 5.8888 3.3383 0.7256 31 1 5.6890 3.8247 -1.6044 32 1 7.7564 0.9880 0.4236 33 1 5.8055 0.5319 1.8038 34 1 2.4522 6.0375 0.8921 35 1 2.4507 6.0381 -0.8878 36 1 2.3883 8.5807 0.0023 37 1 5.1389 9.2329 -1.8709 38 1 3.6780 10.2380 -2.0252 39 1 6.3443 11.1433 -0.8474 40 1 5.7235 11.5697 -2.4604 41 1 5.8019 13.9912 -1.8515 42 1 4.9612 14.5698 -0.3934 43 1 6.4228 13.5655 -0.2385 44 1 3.7032 12.9600 1.0451 45 1 5.1640 11.9552 1.1996 46 1 2.4977 11.0494 0.0217 47 1 3.1185 10.6231 1.6347 48 1 1.3298 4.5113 0.0116 49 1 0.2124 2.3185 -0.0003 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_4974302.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:35:45 Heat of formation + Delta-G solvation = -127.103200 kcal Electronic energy + Delta-G solvation = -29283.029789 eV Core-core repulsion = 25176.886128 eV Total energy + Delta-G solvation = -4106.143661 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.182 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.86423 -41.14773 -40.06857 -39.25579 -38.11515 -36.94921 -35.78350 -32.86755 -32.49387 -31.79376 -30.94889 -29.40866 -27.98224 -26.65685 -26.58694 -23.89458 -23.71696 -22.42996 -22.29919 -21.63130 -20.74409 -19.55230 -18.82128 -18.55910 -18.06364 -17.50200 -17.42835 -17.22047 -16.61511 -16.12209 -16.06214 -15.75744 -15.48077 -15.38413 -15.24261 -15.20354 -15.13756 -14.51397 -14.32413 -14.14445 -14.10360 -13.69790 -13.54479 -13.45725 -13.25511 -13.17717 -13.04984 -12.60098 -12.50326 -12.31428 -12.13074 -12.04291 -11.96458 -11.70963 -11.45779 -11.34844 -11.31259 -11.23766 -11.16071 -10.92713 -10.17956 -10.11017 -8.83534 -4.94936 0.05159 0.32001 1.32025 1.40995 1.43446 1.56818 1.90173 2.34134 2.52909 2.56196 3.44284 3.52700 3.63260 3.69180 3.72625 3.83742 3.87451 3.94294 4.03645 4.06772 4.07976 4.11841 4.16270 4.19730 4.26606 4.36995 4.41058 4.44549 4.45010 4.50455 4.54073 4.69071 4.73918 4.77098 4.79448 4.92929 4.96028 4.97118 5.06379 5.10463 5.11269 5.15647 5.19472 5.19993 5.30971 5.37481 5.39794 5.42914 5.53515 6.11575 6.40261 6.45556 6.49240 7.10233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.091 3.909 4 C -0.118 4.118 5 C -0.119 4.119 6 C -0.082 4.082 7 O -0.545 6.545 8 Si 0.812 3.188 9 C 0.089 3.911 10 O -0.317 6.317 11 C 0.038 3.962 12 C 0.512 3.488 13 O -0.571 6.571 14 N -0.707 5.707 15 C 0.148 3.852 16 H 0.059 0.941 17 C -0.124 4.124 18 C -0.112 4.112 19 C -0.090 4.090 20 H 0.080 0.920 21 C -0.150 4.150 22 C -0.112 4.112 23 C -0.117 4.117 24 C -0.159 4.159 25 C -0.161 4.161 26 H 0.115 0.885 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.153 0.847 30 H 0.061 0.939 31 H 0.371 0.629 32 H -0.294 1.294 33 H -0.264 1.264 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.420 0.580 37 H 0.042 0.958 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.080 0.920 45 H 0.055 0.945 46 H 0.089 0.911 47 H 0.076 0.924 48 H 0.167 0.833 49 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.190 3.143 -0.295 11.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.046 3.954 4 C -0.136 4.136 5 C -0.120 4.120 6 C -0.190 4.190 7 O -0.351 6.351 8 Si 0.713 3.287 9 C 0.044 3.956 10 O -0.231 6.231 11 C -0.039 4.039 12 C 0.298 3.702 13 O -0.449 6.449 14 N -0.360 5.360 15 C 0.043 3.957 16 H 0.078 0.922 17 C -0.163 4.163 18 C -0.151 4.151 19 C -0.109 4.109 20 H 0.098 0.902 21 C -0.208 4.208 22 C -0.150 4.150 23 C -0.155 4.155 24 C -0.178 4.178 25 C -0.179 4.179 26 H 0.133 0.867 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.170 0.830 30 H 0.078 0.922 31 H 0.220 0.780 32 H -0.222 1.222 33 H -0.189 1.189 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.258 0.742 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.074 0.926 46 H 0.107 0.893 47 H 0.095 0.905 48 H 0.185 0.815 49 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.272 1.930 0.308 9.475 hybrid contribution -0.588 1.934 0.339 2.050 sum -9.860 3.864 0.647 10.610 Atomic orbital electron populations 1.23361 0.76361 1.05634 1.02370 1.86090 1.23410 1.26279 1.88921 1.18973 0.91919 0.85374 0.99157 1.20181 0.92455 0.96751 1.04239 1.19453 0.95985 0.91030 1.05548 1.25535 0.92920 1.12550 0.87951 1.86658 1.74260 1.42180 1.32008 0.92224 0.76217 0.78947 0.81281 1.18812 0.91776 0.84230 1.00800 1.86084 1.35587 1.11960 1.89449 1.22714 0.92599 0.81850 1.06771 1.20565 0.88365 0.85553 0.75741 1.90769 1.16749 1.87375 1.50044 1.45786 1.11457 1.04125 1.74657 1.20982 0.94174 0.83878 0.96635 0.92241 1.21854 1.00560 0.97440 0.96406 1.21555 0.98105 0.94185 1.01206 1.21158 0.98865 0.94312 0.96520 0.90189 1.21843 0.99760 0.97318 1.01840 1.21560 0.99735 0.97309 0.96434 1.21761 0.98982 0.92997 1.01765 1.21373 0.92013 1.00053 1.04345 1.21422 1.01615 0.90893 1.04019 0.86719 0.91542 0.91392 0.83035 0.92188 0.78049 1.22186 1.18906 0.85990 0.85648 0.74168 0.93952 0.90186 0.93060 0.91527 0.92662 0.91983 0.93225 0.90188 0.92645 0.89272 0.90539 0.81541 0.82059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.74 10.50 -93.34 -0.98 -1.72 16 3 C 0.09 0.26 6.69 22.49 0.15 0.41 16 4 C -0.12 -0.56 8.59 22.35 0.19 -0.37 16 5 C -0.12 -0.78 5.27 -19.78 -0.10 -0.88 16 6 C -0.08 -0.73 2.33 71.24 0.17 -0.56 16 7 O -0.54 -5.83 12.65 -148.98 -1.89 -7.71 16 8 Si 0.81 4.73 30.17 68.60 2.07 6.80 16 9 C 0.09 0.35 6.62 22.49 0.15 0.50 16 10 O -0.32 -1.67 8.56 -74.27 -0.64 -2.30 16 11 C 0.04 -0.14 5.22 71.24 0.37 0.23 16 12 C 0.51 1.38 7.87 87.66 0.69 2.07 16 13 O -0.57 -8.28 16.16 16.01 0.26 -8.02 16 14 N -0.71 2.85 5.08 -442.54 -2.25 0.60 16 15 C 0.15 -0.15 2.45 44.99 0.11 -0.04 16 16 H 0.06 0.33 7.58 -2.39 -0.02 0.32 16 17 C -0.12 -0.01 5.49 30.59 0.17 0.16 16 18 C -0.11 0.02 5.20 30.60 0.16 0.18 16 19 C -0.09 0.28 2.72 -10.79 -0.03 0.25 16 20 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 21 C -0.15 0.36 9.20 71.98 0.66 1.02 16 22 C -0.11 0.46 5.21 30.59 0.16 0.62 16 23 C -0.12 0.70 5.39 30.59 0.16 0.87 16 24 C -0.16 0.33 9.03 22.36 0.20 0.54 16 25 C -0.16 0.28 9.03 22.35 0.20 0.48 16 26 H 0.11 -0.97 8.14 -2.39 -0.02 -0.99 16 27 H 0.07 -0.53 7.66 -2.39 -0.02 -0.55 16 28 H 0.07 -0.55 7.66 -2.39 -0.02 -0.57 16 29 H 0.15 0.29 5.13 -2.91 -0.01 0.28 16 30 H 0.06 0.70 7.82 -2.39 -0.02 0.68 16 31 H 0.37 3.10 8.59 -74.06 -0.64 2.47 16 32 H -0.29 -3.58 7.11 99.48 0.71 -2.87 16 33 H -0.26 -2.01 7.11 99.48 0.71 -1.30 16 34 H 0.12 -1.18 7.65 -2.39 -0.02 -1.19 16 35 H 0.13 -1.27 7.67 -2.39 -0.02 -1.28 16 36 H 0.42 -5.04 8.60 -92.70 -0.80 -5.84 16 37 H 0.04 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 44 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 45 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 46 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 47 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 48 H 0.17 -1.63 6.29 -2.91 -0.02 -1.64 16 49 H 0.16 -1.23 6.29 -2.91 -0.02 -1.25 16 Total: 0.00 -23.02 390.26 0.67 -22.34 By element: Atomic # 1 Polarization: -16.05 SS G_CDS: -0.43 Total: -16.48 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 4.53 Total: 6.49 kcal Atomic # 7 Polarization: 2.85 SS G_CDS: -2.25 Total: 0.60 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -3.24 Total: -19.76 kcal Atomic # 14 Polarization: 4.73 SS G_CDS: 2.07 Total: 6.80 kcal Total: -23.02 0.67 -22.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_4974302.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.759 kcal (2) G-P(sol) polarization free energy of solvation -23.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds