Wall clock time and date at job start Tue Mar 9 2021 14:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33814 * 122.44966 * 2 1 4 4 C 1.50700 * 124.52488 * 359.97438 * 3 2 1 5 5 O 1.42895 * 109.47072 * 313.65853 * 4 3 2 6 6 Si 1.86300 * 109.47296 * 193.65683 * 4 3 2 7 7 S 1.70619 * 110.95285 * 179.74269 * 3 2 1 8 8 C 1.75828 * 91.56364 * 0.30713 * 7 3 2 9 9 C 1.46581 * 125.45832 * 179.97438 * 8 7 3 10 10 O 1.21702 * 120.00381 * 179.69868 * 9 8 7 11 11 N 1.34779 * 120.00039 * 359.69128 * 9 8 7 12 12 C 1.46504 * 120.00186 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.46899 * 34.99920 * 12 11 9 14 14 C 1.53000 * 109.47226 * 155.00327 * 12 11 9 15 15 C 1.53001 * 109.46954 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47384 * 300.00330 * 15 14 12 17 17 H 1.09006 * 109.46481 * 299.99883 * 16 15 14 18 18 C 1.53000 * 109.47019 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.47283 * 59.99518 * 16 15 14 20 20 C 1.52997 * 109.47044 * 300.00301 * 19 16 15 21 21 C 1.36641 * 109.08562 * 359.70075 * 8 7 3 22 22 H 1.09000 * 109.46701 * 275.84004 * 1 2 3 23 23 H 1.09000 * 109.46765 * 35.83576 * 1 2 3 24 24 H 1.08995 * 109.47524 * 155.84263 * 1 2 3 25 25 H 1.09000 * 109.46971 * 73.65961 * 4 3 2 26 26 H 0.96703 * 114.00035 * 299.99953 * 5 4 3 27 27 H 1.48497 * 109.99953 * 179.97438 * 6 4 3 28 28 H 1.48502 * 110.00041 * 301.32172 * 6 4 3 29 29 H 0.96996 * 119.99926 * 0.02562 * 11 9 8 30 30 H 1.08995 * 109.46808 * 60.00081 * 14 12 11 31 31 H 1.08995 * 109.46955 * 300.00211 * 14 12 11 32 32 H 1.08996 * 109.47012 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.46748 * 60.00320 * 15 14 12 34 34 H 1.09003 * 109.46861 * 59.99824 * 18 16 15 35 35 H 1.09003 * 109.46685 * 179.97438 * 18 16 15 36 36 H 1.08992 * 109.47321 * 299.99483 * 18 16 15 37 37 H 1.09002 * 109.46358 * 60.00611 * 19 16 15 38 38 H 1.08995 * 109.46894 * 179.97438 * 19 16 15 39 39 H 1.08995 * 109.47426 * 299.99400 * 20 19 16 40 40 H 1.09003 * 109.46350 * 179.97438 * 20 19 16 41 41 H 1.08003 * 123.35534 * 180.20756 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6356 2.5161 -0.0006 5 8 0.5936 2.5905 -0.9756 6 14 2.9636 3.7552 -0.4151 7 16 3.8969 0.7891 0.0072 8 6 3.5937 -0.9428 0.0008 9 6 4.6231 -1.9863 0.0023 10 8 4.3001 -3.1597 0.0029 11 7 5.9273 -1.6464 0.0027 12 6 6.9562 -2.6893 0.0037 13 1 6.6123 -3.5394 -0.5856 14 6 8.2453 -2.1345 -0.6055 15 6 9.3200 -3.2236 -0.6039 16 6 9.5877 -3.6739 0.8335 17 1 9.9313 -2.8235 1.4226 18 6 10.6628 -4.7625 0.8351 19 6 8.2985 -4.2286 1.4427 20 6 7.2239 -3.1395 1.4412 21 6 2.2447 -1.1601 0.0003 22 1 -0.3633 0.1046 1.0224 23 1 -0.3633 0.8331 -0.6017 24 1 -0.3634 -0.9376 -0.4205 25 1 1.2270 2.7376 0.9854 26 1 0.8858 2.4043 -1.8785 27 1 2.3949 5.1269 -0.4194 28 1 4.0681 3.6658 0.5736 29 1 6.1847 -0.7112 0.0024 30 1 8.5891 -1.2845 -0.0162 31 1 8.0544 -1.8134 -1.6294 32 1 10.2383 -2.8285 -1.0383 33 1 8.9763 -4.0739 -1.1930 34 1 11.5812 -4.3668 0.4012 35 1 10.8538 -5.0829 1.8593 36 1 10.3197 -5.6129 0.2460 37 1 7.9550 -5.0790 0.8537 38 1 8.4894 -4.5498 2.4667 39 1 7.5675 -2.2892 2.0302 40 1 6.3054 -3.5349 1.8748 41 1 1.8019 -2.1452 0.0000 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_4279154_6739946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:36:08 Heat of formation + Delta-G solvation = -59.116906 kcal Electronic energy + Delta-G solvation = -21735.326846 eV Core-core repulsion = 18514.185542 eV Total energy + Delta-G solvation = -3221.141305 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.123 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.14008 -40.02791 -39.15383 -37.41285 -35.66739 -32.74850 -31.82908 -31.62901 -30.16932 -27.52418 -25.91602 -24.37120 -23.79353 -22.30696 -21.60388 -20.86502 -20.18200 -19.27810 -17.89853 -17.28358 -17.00826 -16.54676 -16.18912 -15.99198 -15.53806 -15.28793 -15.24736 -15.05786 -14.71802 -14.47610 -14.24748 -13.97237 -13.76806 -13.45657 -13.25977 -13.20813 -13.13815 -12.90038 -12.60742 -12.49231 -12.26899 -12.14634 -11.97922 -11.77607 -11.70410 -11.36037 -11.16648 -10.93993 -10.66624 -10.12495 -9.74964 -9.46312 -5.24399 -0.62131 0.26521 0.66633 1.08382 1.29568 1.45533 1.79623 2.04391 2.21112 3.22458 3.53365 3.58414 3.65974 3.73680 3.89668 4.02876 4.12807 4.14472 4.28731 4.35348 4.38156 4.41953 4.46818 4.51254 4.57285 4.70238 4.73630 4.80651 4.84647 4.87802 4.94443 5.00668 5.04283 5.10738 5.14011 5.20172 5.26892 5.34842 5.39405 5.44261 5.45986 5.50965 6.34924 6.39743 7.13848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.084 4.084 3 C -0.241 4.241 4 C -0.025 4.025 5 O -0.529 6.529 6 Si 0.649 3.351 7 S 0.193 5.807 8 C -0.260 4.260 9 C 0.592 3.408 10 O -0.524 6.524 11 N -0.724 5.724 12 C 0.146 3.854 13 H 0.092 0.908 14 C -0.127 4.127 15 C -0.111 4.111 16 C -0.095 4.095 17 H 0.071 0.929 18 C -0.149 4.149 19 C -0.112 4.112 20 C -0.130 4.130 21 C -0.049 4.049 22 H 0.068 0.932 23 H 0.094 0.906 24 H 0.065 0.935 25 H 0.124 0.876 26 H 0.382 0.618 27 H -0.230 1.230 28 H -0.235 1.235 29 H 0.397 0.603 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.843 2.875 -1.993 4.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.360 4.360 4 C -0.138 4.138 5 O -0.335 6.335 6 Si 0.548 3.452 7 S 0.462 5.538 8 C -0.379 4.379 9 C 0.378 3.622 10 O -0.402 6.402 11 N -0.375 5.375 12 C 0.043 3.957 13 H 0.110 0.890 14 C -0.165 4.165 15 C -0.149 4.149 16 C -0.113 4.113 17 H 0.089 0.911 18 C -0.207 4.207 19 C -0.150 4.150 20 C -0.169 4.169 21 C -0.082 4.082 22 H 0.087 0.913 23 H 0.113 0.887 24 H 0.084 0.916 25 H 0.141 0.859 26 H 0.230 0.770 27 H -0.153 1.153 28 H -0.159 1.159 29 H 0.231 0.769 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.063 3.793 -1.195 5.686 hybrid contribution -1.503 -0.746 0.512 1.755 sum 2.560 3.047 -0.684 4.038 Atomic orbital electron populations 1.20770 0.88756 1.04056 1.03130 1.18737 0.98392 0.90565 1.01979 1.24387 0.98170 1.00937 1.12485 1.24430 0.97927 0.95511 0.95918 1.86478 1.34742 1.92668 1.19592 0.94946 0.78821 0.80795 0.90589 1.82925 1.03546 0.98524 1.68845 1.24634 0.98031 0.97048 1.18233 1.16950 0.81656 0.87413 0.76137 1.90857 1.81588 1.18148 1.49600 1.45972 1.05385 1.10258 1.75882 1.21073 0.86710 0.90756 0.97202 0.89005 1.21824 0.94209 0.99137 1.01373 1.21545 0.98235 0.98262 0.96837 1.21190 0.95368 0.98526 0.96257 0.91106 1.21834 0.98300 0.98579 1.01938 1.21561 0.94158 0.97945 1.01343 1.21931 0.99574 0.99159 0.96214 1.20768 0.90942 1.00160 0.96350 0.91343 0.88721 0.91585 0.85911 0.77024 1.15348 1.15898 0.76877 0.91256 0.91036 0.91222 0.91462 0.92587 0.92580 0.92547 0.91551 0.91509 0.91720 0.91287 0.82746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.02 9.74 36.01 0.35 0.37 16 2 C -0.08 -0.06 5.75 -106.45 -0.61 -0.67 16 3 C -0.24 0.07 5.61 -35.86 -0.20 -0.13 16 4 C -0.02 0.03 2.68 36.01 0.10 0.13 16 5 O -0.53 0.72 10.27 -35.23 -0.36 0.36 16 6 Si 0.65 -1.28 30.97 -169.99 -5.26 -6.55 16 7 S 0.19 -0.15 19.34 -107.50 -2.08 -2.23 16 8 C -0.26 -0.44 6.45 -36.80 -0.24 -0.68 16 9 C 0.59 1.85 7.75 -12.90 -0.10 1.75 16 10 O -0.52 -3.51 16.50 5.19 0.09 -3.42 16 11 N -0.72 -0.30 5.07 -55.14 -0.28 -0.58 16 12 C 0.15 0.04 2.46 -67.93 -0.17 -0.13 16 13 H 0.09 0.19 7.58 -51.93 -0.39 -0.20 16 14 C -0.13 0.21 5.39 -26.73 -0.14 0.07 16 15 C -0.11 0.17 5.20 -26.73 -0.14 0.03 16 16 C -0.09 0.10 2.72 -90.62 -0.25 -0.14 16 17 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 18 C -0.15 0.16 9.19 37.16 0.34 0.50 16 19 C -0.11 0.03 5.21 -26.73 -0.14 -0.11 16 20 C -0.13 -0.06 5.49 -26.73 -0.15 -0.20 16 21 C -0.05 -0.09 9.78 -40.43 -0.40 -0.48 16 22 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 23 H 0.09 -0.03 5.55 -51.93 -0.29 -0.32 16 24 H 0.07 -0.04 8.10 -51.93 -0.42 -0.47 16 25 H 0.12 -0.11 7.96 -51.93 -0.41 -0.52 16 26 H 0.38 -1.84 8.70 45.56 0.40 -1.44 16 27 H -0.23 -0.19 7.11 56.52 0.40 0.22 16 28 H -0.23 0.05 7.11 56.52 0.40 0.45 16 29 H 0.40 -0.70 7.72 -40.82 -0.31 -1.02 16 30 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 31 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 32 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 33 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 34 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 35 H 0.06 -0.05 8.14 -51.93 -0.42 -0.48 16 36 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 37 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 38 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 39 H 0.06 0.00 8.14 -51.93 -0.42 -0.43 16 40 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.15 0.28 8.06 -52.48 -0.42 -0.14 16 LS Contribution 339.29 15.07 5.11 5.11 Total: 0.00 -5.48 339.29 -11.08 -16.55 By element: Atomic # 1 Polarization: -2.99 SS G_CDS: -6.55 Total: -9.54 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -1.74 Total: 0.29 kcal Atomic # 7 Polarization: -0.30 SS G_CDS: -0.28 Total: -0.58 kcal Atomic # 8 Polarization: -2.79 SS G_CDS: -0.28 Total: -3.07 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: -5.26 Total: -6.55 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -2.08 Total: -2.23 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -5.48 -11.08 -16.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_6739946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.566 kcal (2) G-P(sol) polarization free energy of solvation -5.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds