Wall clock time and date at job start Tue Mar 9 2021 14:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33814 * 122.44966 * 2 1 4 4 C 1.50700 * 124.52488 * 359.97438 * 3 2 1 5 5 O 1.42895 * 109.47072 * 313.65853 * 4 3 2 6 6 Si 1.86300 * 109.47296 * 193.65683 * 4 3 2 7 7 S 1.70619 * 110.95285 * 179.74269 * 3 2 1 8 8 C 1.75828 * 91.56364 * 0.30713 * 7 3 2 9 9 C 1.46581 * 125.45832 * 179.97438 * 8 7 3 10 10 O 1.21702 * 120.00381 * 179.69868 * 9 8 7 11 11 N 1.34779 * 120.00039 * 359.69128 * 9 8 7 12 12 C 1.46504 * 120.00186 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.46899 * 34.99920 * 12 11 9 14 14 C 1.53000 * 109.47226 * 155.00327 * 12 11 9 15 15 C 1.53001 * 109.46954 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47384 * 300.00330 * 15 14 12 17 17 H 1.09006 * 109.46481 * 299.99883 * 16 15 14 18 18 C 1.53000 * 109.47019 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.47283 * 59.99518 * 16 15 14 20 20 C 1.52997 * 109.47044 * 300.00301 * 19 16 15 21 21 C 1.36641 * 109.08562 * 359.70075 * 8 7 3 22 22 H 1.09000 * 109.46701 * 275.84004 * 1 2 3 23 23 H 1.09000 * 109.46765 * 35.83576 * 1 2 3 24 24 H 1.08995 * 109.47524 * 155.84263 * 1 2 3 25 25 H 1.09000 * 109.46971 * 73.65961 * 4 3 2 26 26 H 0.96703 * 114.00035 * 299.99953 * 5 4 3 27 27 H 1.48497 * 109.99953 * 179.97438 * 6 4 3 28 28 H 1.48502 * 110.00041 * 301.32172 * 6 4 3 29 29 H 0.96996 * 119.99926 * 0.02562 * 11 9 8 30 30 H 1.08995 * 109.46808 * 60.00081 * 14 12 11 31 31 H 1.08995 * 109.46955 * 300.00211 * 14 12 11 32 32 H 1.08996 * 109.47012 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.46748 * 60.00320 * 15 14 12 34 34 H 1.09003 * 109.46861 * 59.99824 * 18 16 15 35 35 H 1.09003 * 109.46685 * 179.97438 * 18 16 15 36 36 H 1.08992 * 109.47321 * 299.99483 * 18 16 15 37 37 H 1.09002 * 109.46358 * 60.00611 * 19 16 15 38 38 H 1.08995 * 109.46894 * 179.97438 * 19 16 15 39 39 H 1.08995 * 109.47426 * 299.99400 * 20 19 16 40 40 H 1.09003 * 109.46350 * 179.97438 * 20 19 16 41 41 H 1.08003 * 123.35534 * 180.20756 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6356 2.5161 -0.0006 5 8 0.5936 2.5905 -0.9756 6 14 2.9636 3.7552 -0.4151 7 16 3.8969 0.7891 0.0072 8 6 3.5937 -0.9428 0.0008 9 6 4.6231 -1.9863 0.0023 10 8 4.3001 -3.1597 0.0029 11 7 5.9273 -1.6464 0.0027 12 6 6.9562 -2.6893 0.0037 13 1 6.6123 -3.5394 -0.5856 14 6 8.2453 -2.1345 -0.6055 15 6 9.3200 -3.2236 -0.6039 16 6 9.5877 -3.6739 0.8335 17 1 9.9313 -2.8235 1.4226 18 6 10.6628 -4.7625 0.8351 19 6 8.2985 -4.2286 1.4427 20 6 7.2239 -3.1395 1.4412 21 6 2.2447 -1.1601 0.0003 22 1 -0.3633 0.1046 1.0224 23 1 -0.3633 0.8331 -0.6017 24 1 -0.3634 -0.9376 -0.4205 25 1 1.2270 2.7376 0.9854 26 1 0.8858 2.4043 -1.8785 27 1 2.3949 5.1269 -0.4194 28 1 4.0681 3.6658 0.5736 29 1 6.1847 -0.7112 0.0024 30 1 8.5891 -1.2845 -0.0162 31 1 8.0544 -1.8134 -1.6294 32 1 10.2383 -2.8285 -1.0383 33 1 8.9763 -4.0739 -1.1930 34 1 11.5812 -4.3668 0.4012 35 1 10.8538 -5.0829 1.8593 36 1 10.3197 -5.6129 0.2460 37 1 7.9550 -5.0790 0.8537 38 1 8.4894 -4.5498 2.4667 39 1 7.5675 -2.2892 2.0302 40 1 6.3054 -3.5349 1.8748 41 1 1.8019 -2.1452 0.0000 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_6739946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:36:07 Heat of formation + Delta-G solvation = -53.863110 kcal Electronic energy + Delta-G solvation = -21735.099025 eV Core-core repulsion = 18514.185542 eV Total energy + Delta-G solvation = -3220.913483 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.123 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.28537 -40.02633 -39.21585 -37.35772 -35.79805 -32.81146 -31.78654 -31.64344 -30.14743 -27.54200 -25.90553 -24.39609 -23.76532 -22.30493 -21.75172 -20.83309 -20.18968 -19.32676 -17.92245 -17.30927 -17.06018 -16.54562 -16.21576 -16.08558 -15.56463 -15.23910 -15.21995 -15.15487 -14.72178 -14.49642 -14.24916 -13.95343 -13.76125 -13.46387 -13.24410 -13.16466 -13.14288 -12.92337 -12.57029 -12.48182 -12.26253 -12.12072 -11.95806 -11.78330 -11.69204 -11.34364 -11.19876 -11.07549 -10.58966 -10.26398 -9.78020 -9.45306 -5.10385 -0.70206 0.23886 0.65023 1.12638 1.25752 1.55144 1.88956 1.94924 2.03412 3.36733 3.54885 3.62626 3.69745 3.72616 3.91347 4.07222 4.08924 4.16268 4.28463 4.36889 4.41201 4.42291 4.51310 4.54854 4.56931 4.74712 4.78038 4.80337 4.83854 4.95285 4.98175 4.99438 5.07290 5.11360 5.17178 5.21038 5.31793 5.37178 5.39646 5.41640 5.45211 5.55387 6.31268 6.66062 6.98828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.096 4.096 3 C -0.237 4.237 4 C -0.030 4.030 5 O -0.539 6.539 6 Si 0.723 3.277 7 S 0.247 5.753 8 C -0.283 4.283 9 C 0.589 3.411 10 O -0.571 6.571 11 N -0.711 5.711 12 C 0.146 3.854 13 H 0.069 0.931 14 C -0.120 4.120 15 C -0.110 4.110 16 C -0.091 4.091 17 H 0.077 0.923 18 C -0.149 4.149 19 C -0.110 4.110 20 C -0.126 4.126 21 C -0.059 4.059 22 H 0.065 0.935 23 H 0.098 0.902 24 H 0.067 0.933 25 H 0.121 0.879 26 H 0.397 0.603 27 H -0.269 1.269 28 H -0.252 1.252 29 H 0.410 0.590 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.042 0.958 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.877 4.470 -2.347 6.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.108 4.108 3 C -0.357 4.357 4 C -0.142 4.142 5 O -0.347 6.347 6 Si 0.625 3.375 7 S 0.515 5.485 8 C -0.403 4.403 9 C 0.376 3.624 10 O -0.452 6.452 11 N -0.362 5.362 12 C 0.042 3.958 13 H 0.087 0.913 14 C -0.158 4.158 15 C -0.148 4.148 16 C -0.110 4.110 17 H 0.095 0.905 18 C -0.206 4.206 19 C -0.148 4.148 20 C -0.164 4.164 21 C -0.093 4.093 22 H 0.084 0.916 23 H 0.116 0.884 24 H 0.086 0.914 25 H 0.138 0.862 26 H 0.248 0.752 27 H -0.194 1.194 28 H -0.178 1.178 29 H 0.246 0.754 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.121 5.398 -1.565 7.603 hybrid contribution -1.846 -1.180 0.635 2.281 sum 3.275 4.218 -0.930 5.420 Atomic orbital electron populations 1.20755 0.88341 1.04301 1.03039 1.18765 0.98803 0.90427 1.02846 1.24634 0.98714 1.01208 1.11156 1.24595 0.98431 0.95022 0.96162 1.86451 1.35002 1.92596 1.20689 0.94103 0.76620 0.77709 0.89086 1.82654 1.02551 0.95767 1.67485 1.24611 0.97694 0.98559 1.19404 1.17216 0.82574 0.87102 0.75498 1.90825 1.82363 1.20057 1.51966 1.45899 1.04633 1.11063 1.74577 1.21084 0.87511 0.90285 0.96902 0.91300 1.21792 0.92744 0.99408 1.01844 1.21549 0.98693 0.98124 0.96445 1.21165 0.94601 0.98652 0.96553 0.90460 1.21832 0.98499 0.98471 1.01847 1.21542 0.94539 0.97433 1.01327 1.21872 0.98638 0.99623 0.96289 1.20816 0.91356 1.00294 0.96844 0.91608 0.88367 0.91438 0.86175 0.75223 1.19386 1.17810 0.75368 0.89709 0.90303 0.90062 0.92191 0.91987 0.92710 0.92984 0.92574 0.91480 0.90662 0.93868 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.01 9.74 71.24 0.69 0.69 16 2 C -0.10 -0.17 5.75 -21.05 -0.12 -0.29 16 3 C -0.24 0.27 5.61 24.68 0.14 0.40 16 4 C -0.03 0.10 2.68 71.24 0.19 0.29 16 5 O -0.54 1.94 10.27 -148.98 -1.53 0.41 16 6 Si 0.72 -3.64 30.97 68.60 2.12 -1.52 16 7 S 0.25 -0.59 19.34 -56.49 -1.09 -1.69 16 8 C -0.28 -1.20 6.45 24.07 0.16 -1.04 16 9 C 0.59 4.57 7.75 86.42 0.67 5.24 16 10 O -0.57 -9.24 16.50 -4.35 -0.07 -9.32 16 11 N -0.71 -0.92 5.07 -446.58 -2.27 -3.18 16 12 C 0.15 0.19 2.46 44.99 0.11 0.30 16 13 H 0.07 0.43 7.58 -2.39 -0.02 0.41 16 14 C -0.12 0.50 5.39 30.59 0.16 0.67 16 15 C -0.11 0.40 5.20 30.59 0.16 0.56 16 16 C -0.09 0.23 2.72 -10.79 -0.03 0.20 16 17 H 0.08 -0.26 8.14 -2.38 -0.02 -0.28 16 18 C -0.15 0.35 9.19 71.98 0.66 1.01 16 19 C -0.11 -0.04 5.21 30.59 0.16 0.12 16 20 C -0.13 -0.24 5.49 30.59 0.17 -0.07 16 21 C -0.06 -0.29 9.78 21.72 0.21 -0.08 16 22 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 23 H 0.10 -0.07 5.55 -2.39 -0.01 -0.09 16 24 H 0.07 -0.03 8.10 -2.39 -0.02 -0.05 16 25 H 0.12 -0.30 7.96 -2.39 -0.02 -0.32 16 26 H 0.40 -4.32 8.70 -74.06 -0.64 -4.96 16 27 H -0.27 -0.40 7.11 99.48 0.71 0.31 16 28 H -0.25 0.50 7.11 99.48 0.71 1.20 16 29 H 0.41 -1.75 7.72 -92.71 -0.72 -2.46 16 30 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 31 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 32 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 35 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.14 0.90 8.06 -2.91 -0.02 0.87 16 Total: 0.00 -14.55 339.29 0.21 -14.35 By element: Atomic # 1 Polarization: -6.76 SS G_CDS: -0.29 Total: -7.06 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 3.33 Total: 8.00 kcal Atomic # 7 Polarization: -0.92 SS G_CDS: -2.27 Total: -3.18 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -1.60 Total: -8.91 kcal Atomic # 14 Polarization: -3.64 SS G_CDS: 2.12 Total: -1.52 kcal Atomic # 16 Polarization: -0.59 SS G_CDS: -1.09 Total: -1.69 kcal Total: -14.55 0.21 -14.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_6739946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.516 kcal (2) G-P(sol) polarization free energy of solvation -14.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds