Wall clock time and date at job start Tue Mar 9 2021 14:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47354 * 2 1 4 4 C 1.52999 * 109.47208 * 119.99993 * 2 1 3 5 5 C 1.52992 * 109.47158 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47365 * 300.00110 * 5 4 2 7 7 H 1.09001 * 109.47123 * 299.99894 * 6 5 4 8 8 N 1.46491 * 109.47181 * 180.02562 * 6 5 4 9 9 C 1.34784 * 120.00214 * 154.99727 * 8 6 5 10 10 O 1.21638 * 119.99613 * 0.02562 * 9 8 6 11 11 C 1.47185 * 120.00383 * 179.97438 * 9 8 6 12 12 C 1.36011 * 123.45823 * 359.97438 * 11 9 8 13 13 S 1.70450 * 110.81511 * 179.97438 * 12 11 9 14 14 C 1.75502 * 92.44601 * 0.02562 * 13 12 11 15 15 C 1.50700 * 124.71476 * 179.97438 * 14 13 12 16 16 O 1.42903 * 109.46837 * 245.02163 * 15 14 13 17 17 Si 1.86300 * 109.46849 * 5.01709 * 15 14 13 18 18 C 1.32769 * 110.57587 * 0.24118 * 14 13 12 19 19 C 1.52999 * 109.47072 * 59.99838 * 6 5 4 20 20 C 1.53001 * 109.47208 * 300.00122 * 19 6 5 21 21 H 1.09002 * 109.47066 * 299.99821 * 1 2 3 22 22 H 1.09000 * 109.47436 * 60.00081 * 1 2 3 23 23 H 1.09001 * 109.47025 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46755 * 59.99810 * 4 2 1 25 25 H 1.09002 * 109.47258 * 300.00068 * 4 2 1 26 26 H 1.09000 * 109.47386 * 179.97438 * 5 4 2 27 27 H 1.08993 * 109.47242 * 60.00106 * 5 4 2 28 28 H 0.96998 * 120.00528 * 334.99941 * 8 6 5 29 29 H 1.08000 * 124.59521 * 359.96632 * 12 11 9 30 30 H 1.08997 * 109.47760 * 125.01977 * 15 14 13 31 31 H 0.96700 * 114.00022 * 60.00263 * 16 15 14 32 32 H 1.48506 * 110.00048 * 58.68772 * 17 15 14 33 33 H 1.48502 * 109.99996 * 180.02562 * 17 15 14 34 34 H 1.07997 * 123.46086 * 179.76096 * 18 14 13 35 35 H 1.08993 * 109.46958 * 60.00358 * 19 6 5 36 36 H 1.09000 * 109.46594 * 180.02562 * 19 6 5 37 37 H 1.09004 * 109.47143 * 300.00492 * 20 19 6 38 38 H 1.09000 * 109.47436 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5699 -0.7218 1.2489 6 6 4.0795 -1.4434 -0.0004 7 1 3.7158 -2.4710 -0.0002 8 7 5.5444 -1.4444 -0.0003 9 6 6.2177 -2.4011 -0.6698 10 8 5.6089 -3.2633 -1.2744 11 6 7.6896 -2.4018 -0.6703 12 6 8.4401 -1.4723 -0.0203 13 16 10.1030 -1.7793 -0.2340 14 6 9.7913 -3.1945 -1.2241 15 6 10.8579 -4.0668 -1.8343 16 8 10.7932 -3.9724 -3.2587 17 14 12.5335 -3.4996 -1.2498 18 6 8.4852 -3.3864 -1.3655 19 6 3.5695 -0.7222 -1.2496 20 6 2.0395 -0.7216 -1.2493 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6766 -1.7489 1.2492 25 1 1.6767 -0.2074 2.1392 26 1 3.9333 -1.2352 2.1391 27 1 3.9337 0.3057 1.2487 28 1 6.0299 -0.7567 0.4815 29 1 8.0371 -0.6508 0.5534 30 1 10.6985 -5.1016 -1.5311 31 1 10.9267 -3.0776 -3.6000 32 1 12.6027 -3.5629 0.2322 33 1 13.5942 -4.3516 -1.8450 34 1 8.0612 -4.1975 -1.9389 35 1 3.9332 0.3053 -1.2498 36 1 3.9321 -1.2366 -2.1395 37 1 1.6758 -1.7492 -1.2490 38 1 1.6761 -0.2082 -2.1395 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_4279154_6894386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:36:10 Heat of formation + Delta-G solvation = -56.347504 kcal Electronic energy + Delta-G solvation = -19802.176098 eV Core-core repulsion = 16736.692502 eV Total energy + Delta-G solvation = -3065.483595 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.19498 -39.60057 -38.63912 -37.07477 -35.66327 -32.64152 -31.81227 -31.28696 -27.27886 -26.94378 -25.20511 -23.78970 -22.44541 -21.74925 -21.01801 -20.24097 -19.02129 -18.04180 -17.74957 -16.98625 -16.32893 -16.18983 -15.73786 -15.43669 -15.28437 -15.24338 -15.03849 -14.48580 -14.32494 -14.10409 -13.75472 -13.58841 -13.55175 -13.24587 -13.17778 -12.67947 -12.58391 -12.27080 -12.14098 -11.98150 -11.91995 -11.69169 -11.34895 -11.14533 -10.81610 -10.60154 -10.09597 -9.99674 -9.50420 -5.23181 -0.37153 0.32320 0.66946 0.91946 1.16424 1.54042 1.84818 2.12637 2.39405 3.31346 3.54573 3.62017 3.66781 3.79326 3.86763 3.98726 4.05302 4.15780 4.27569 4.35767 4.38702 4.44138 4.47367 4.51960 4.69805 4.71438 4.75077 4.87886 4.94655 4.99487 5.03955 5.11297 5.14963 5.20501 5.22660 5.27945 5.36151 5.47487 5.53884 6.45300 6.48816 7.25019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 H 0.070 0.930 4 C -0.111 4.111 5 C -0.127 4.127 6 C 0.146 3.854 7 H 0.090 0.910 8 N -0.724 5.724 9 C 0.578 3.422 10 O -0.531 6.531 11 C -0.155 4.155 12 C -0.206 4.206 13 S 0.194 5.806 14 C -0.244 4.244 15 C -0.026 4.026 16 O -0.533 6.533 17 Si 0.656 3.344 18 C -0.053 4.053 19 C -0.129 4.129 20 C -0.112 4.112 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.397 0.603 29 H 0.171 0.829 30 H 0.124 0.876 31 H 0.381 0.619 32 H -0.237 1.237 33 H -0.233 1.233 34 H 0.156 0.844 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.637 5.716 2.419 6.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.165 4.165 6 C 0.042 3.958 7 H 0.108 0.892 8 N -0.375 5.375 9 C 0.364 3.636 10 O -0.408 6.408 11 C -0.174 4.174 12 C -0.344 4.344 13 S 0.461 5.539 14 C -0.360 4.360 15 C -0.139 4.139 16 O -0.339 6.339 17 Si 0.555 3.445 18 C -0.082 4.082 19 C -0.168 4.168 20 C -0.151 4.151 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.232 0.768 29 H 0.188 0.812 30 H 0.141 0.859 31 H 0.228 0.772 32 H -0.161 1.161 33 H -0.156 1.156 34 H 0.174 0.826 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.153 4.941 2.981 6.575 hybrid contribution -1.676 -0.536 -0.097 1.762 sum 1.477 4.405 2.884 5.468 Atomic orbital electron populations 1.21837 0.94970 1.02023 1.01836 1.21185 0.95745 0.99633 0.94730 0.91116 1.21548 0.93957 1.01348 0.98068 1.21812 0.96786 1.00844 0.97018 1.21038 0.78420 1.01166 0.95165 0.89207 1.45940 1.07424 1.30441 1.53648 1.17618 0.86110 0.81220 0.78693 1.90823 1.69613 1.37292 1.43107 1.20284 0.93987 0.98635 1.04462 1.25784 0.99829 1.03777 1.04993 1.83025 1.02836 1.21625 1.46438 1.24791 0.99042 1.03414 1.08799 1.24451 1.04122 1.00874 0.84469 1.86547 1.95318 1.34469 1.17552 0.95132 0.76859 0.90602 0.81895 1.21057 0.91043 0.98590 0.97529 1.21920 0.96025 1.00685 0.98140 1.21568 0.94540 1.01154 0.97788 0.92604 0.92563 0.92560 0.91499 0.91286 0.91207 0.91327 0.76806 0.81171 0.85860 0.77171 1.16147 1.15560 0.82647 0.91775 0.91286 0.91587 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.15 9.19 37.16 0.34 0.49 16 2 C -0.09 0.10 2.72 -90.62 -0.25 -0.15 16 3 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 4 C -0.11 0.15 5.20 -26.74 -0.14 0.01 16 5 C -0.13 0.21 5.39 -26.73 -0.14 0.06 16 6 C 0.15 0.04 2.45 -67.93 -0.17 -0.13 16 7 H 0.09 0.22 7.58 -51.93 -0.39 -0.17 16 8 N -0.72 -0.02 5.05 -54.96 -0.28 -0.30 16 9 C 0.58 1.77 7.76 -12.62 -0.10 1.67 16 10 O -0.53 -3.74 16.46 5.24 0.09 -3.66 16 11 C -0.16 -0.22 5.98 -104.63 -0.63 -0.85 16 12 C -0.21 0.28 10.38 29.93 0.31 0.59 16 13 S 0.19 -0.35 20.20 -107.50 -2.17 -2.52 16 14 C -0.24 -0.01 5.65 -36.18 -0.20 -0.21 16 15 C -0.03 0.01 2.94 36.01 0.11 0.12 16 16 O -0.53 -0.10 12.88 -35.23 -0.45 -0.56 16 17 Si 0.66 -1.00 30.92 -169.99 -5.26 -6.26 16 18 C -0.05 -0.10 9.95 -39.02 -0.39 -0.49 16 19 C -0.13 -0.05 5.50 -26.73 -0.15 -0.20 16 20 C -0.11 0.02 5.20 -26.73 -0.14 -0.12 16 21 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 22 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 23 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 24 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 25 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 26 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 27 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 28 H 0.40 -1.10 7.10 -40.82 -0.29 -1.39 16 29 H 0.17 -0.73 7.01 -52.49 -0.37 -1.10 16 30 H 0.12 -0.01 7.96 -51.93 -0.41 -0.43 16 31 H 0.38 -1.43 8.70 45.56 0.40 -1.03 16 32 H -0.24 -0.09 7.11 56.52 0.40 0.31 16 33 H -0.23 -0.30 7.11 56.52 0.40 0.10 16 34 H 0.16 0.46 8.06 -52.49 -0.42 0.04 16 35 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 36 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 38 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 LS Contribution 322.15 15.07 4.85 4.85 Total: 0.00 -6.39 322.15 -10.52 -16.91 By element: Atomic # 1 Polarization: -3.51 SS G_CDS: -5.76 Total: -9.27 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -1.54 Total: 0.79 kcal Atomic # 7 Polarization: -0.02 SS G_CDS: -0.28 Total: -0.30 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.37 Total: -4.21 kcal Atomic # 14 Polarization: -1.00 SS G_CDS: -5.26 Total: -6.26 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -2.17 Total: -2.52 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -6.39 -10.52 -16.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_6894386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.438 kcal (2) G-P(sol) polarization free energy of solvation -6.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds