Wall clock time and date at job start Tue Mar 9 2021 14:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47354 * 2 1 4 4 C 1.52999 * 109.47208 * 119.99993 * 2 1 3 5 5 C 1.52992 * 109.47158 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47365 * 300.00110 * 5 4 2 7 7 H 1.09001 * 109.47123 * 299.99894 * 6 5 4 8 8 N 1.46491 * 109.47181 * 180.02562 * 6 5 4 9 9 C 1.34784 * 120.00214 * 154.99727 * 8 6 5 10 10 O 1.21638 * 119.99613 * 0.02562 * 9 8 6 11 11 C 1.47185 * 120.00383 * 179.97438 * 9 8 6 12 12 C 1.36011 * 123.45823 * 359.97438 * 11 9 8 13 13 S 1.70450 * 110.81511 * 179.97438 * 12 11 9 14 14 C 1.75502 * 92.44601 * 0.02562 * 13 12 11 15 15 C 1.50700 * 124.71476 * 179.97438 * 14 13 12 16 16 O 1.42903 * 109.46837 * 245.02163 * 15 14 13 17 17 Si 1.86300 * 109.46849 * 5.01709 * 15 14 13 18 18 C 1.32769 * 110.57587 * 0.24118 * 14 13 12 19 19 C 1.52999 * 109.47072 * 59.99838 * 6 5 4 20 20 C 1.53001 * 109.47208 * 300.00122 * 19 6 5 21 21 H 1.09002 * 109.47066 * 299.99821 * 1 2 3 22 22 H 1.09000 * 109.47436 * 60.00081 * 1 2 3 23 23 H 1.09001 * 109.47025 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46755 * 59.99810 * 4 2 1 25 25 H 1.09002 * 109.47258 * 300.00068 * 4 2 1 26 26 H 1.09000 * 109.47386 * 179.97438 * 5 4 2 27 27 H 1.08993 * 109.47242 * 60.00106 * 5 4 2 28 28 H 0.96998 * 120.00528 * 334.99941 * 8 6 5 29 29 H 1.08000 * 124.59521 * 359.96632 * 12 11 9 30 30 H 1.08997 * 109.47760 * 125.01977 * 15 14 13 31 31 H 0.96700 * 114.00022 * 60.00263 * 16 15 14 32 32 H 1.48506 * 110.00048 * 58.68772 * 17 15 14 33 33 H 1.48502 * 109.99996 * 180.02562 * 17 15 14 34 34 H 1.07997 * 123.46086 * 179.76096 * 18 14 13 35 35 H 1.08993 * 109.46958 * 60.00358 * 19 6 5 36 36 H 1.09000 * 109.46594 * 180.02562 * 19 6 5 37 37 H 1.09004 * 109.47143 * 300.00492 * 20 19 6 38 38 H 1.09000 * 109.47436 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5699 -0.7218 1.2489 6 6 4.0795 -1.4434 -0.0004 7 1 3.7158 -2.4710 -0.0002 8 7 5.5444 -1.4444 -0.0003 9 6 6.2177 -2.4011 -0.6698 10 8 5.6089 -3.2633 -1.2744 11 6 7.6896 -2.4018 -0.6703 12 6 8.4401 -1.4723 -0.0203 13 16 10.1030 -1.7793 -0.2340 14 6 9.7913 -3.1945 -1.2241 15 6 10.8579 -4.0668 -1.8343 16 8 10.7932 -3.9724 -3.2587 17 14 12.5335 -3.4996 -1.2498 18 6 8.4852 -3.3864 -1.3655 19 6 3.5695 -0.7222 -1.2496 20 6 2.0395 -0.7216 -1.2493 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6766 -1.7489 1.2492 25 1 1.6767 -0.2074 2.1392 26 1 3.9333 -1.2352 2.1391 27 1 3.9337 0.3057 1.2487 28 1 6.0299 -0.7567 0.4815 29 1 8.0371 -0.6508 0.5534 30 1 10.6985 -5.1016 -1.5311 31 1 10.9267 -3.0776 -3.6000 32 1 12.6027 -3.5629 0.2322 33 1 13.5942 -4.3516 -1.8450 34 1 8.0612 -4.1975 -1.9389 35 1 3.9332 0.3053 -1.2498 36 1 3.9321 -1.2366 -2.1395 37 1 1.6758 -1.7492 -1.2490 38 1 1.6761 -0.2082 -2.1395 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_4279154_6894386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:36:10 Heat of formation + Delta-G solvation = -53.422872 kcal Electronic energy + Delta-G solvation = -19802.049276 eV Core-core repulsion = 16736.692502 eV Total energy + Delta-G solvation = -3065.356774 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.32061 -39.61058 -38.68926 -37.11492 -35.78325 -32.66697 -31.78377 -31.28116 -27.28821 -26.94079 -25.23084 -23.77045 -22.44147 -21.83537 -21.02009 -20.28338 -18.98961 -18.11033 -17.76064 -17.02861 -16.38278 -16.24184 -15.85571 -15.45474 -15.23127 -15.22154 -15.06406 -14.53646 -14.31632 -14.10884 -13.77620 -13.60849 -13.57606 -13.24043 -13.15349 -12.65735 -12.54994 -12.31083 -12.12027 -11.99152 -11.92325 -11.66151 -11.31763 -11.15947 -10.97029 -10.59064 -10.20988 -10.00176 -9.43968 -5.14378 -0.35003 0.38522 0.68547 0.80712 1.21728 1.60332 1.90062 2.07244 2.24429 3.38530 3.61059 3.66094 3.70991 3.82826 3.93956 3.98894 4.08357 4.16886 4.26993 4.38361 4.39877 4.42728 4.51483 4.55276 4.69722 4.75762 4.78612 4.94363 4.96992 4.99875 5.07004 5.11081 5.15908 5.16818 5.21907 5.33412 5.39054 5.45465 5.55057 6.45804 6.67910 7.13780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 H 0.079 0.921 4 C -0.111 4.111 5 C -0.118 4.118 6 C 0.146 3.854 7 H 0.060 0.940 8 N -0.707 5.707 9 C 0.574 3.426 10 O -0.586 6.586 11 C -0.185 4.185 12 C -0.189 4.189 13 S 0.257 5.743 14 C -0.250 4.250 15 C -0.040 4.040 16 O -0.553 6.553 17 Si 0.745 3.255 18 C -0.078 4.078 19 C -0.123 4.123 20 C -0.111 4.111 21 H 0.061 0.939 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.414 0.586 29 H 0.205 0.795 30 H 0.112 0.888 31 H 0.397 0.603 32 H -0.255 1.255 33 H -0.274 1.274 34 H 0.129 0.871 35 H 0.078 0.922 36 H 0.040 0.960 37 H 0.052 0.948 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.625 8.199 3.968 9.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 H 0.098 0.902 4 C -0.149 4.149 5 C -0.156 4.156 6 C 0.042 3.958 7 H 0.079 0.921 8 N -0.359 5.359 9 C 0.361 3.639 10 O -0.468 6.468 11 C -0.203 4.203 12 C -0.327 4.327 13 S 0.523 5.477 14 C -0.366 4.366 15 C -0.151 4.151 16 O -0.361 6.361 17 Si 0.646 3.354 18 C -0.107 4.107 19 C -0.162 4.162 20 C -0.150 4.150 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.252 0.748 29 H 0.222 0.778 30 H 0.130 0.870 31 H 0.247 0.753 32 H -0.181 1.181 33 H -0.199 1.199 34 H 0.147 0.853 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.125 7.472 4.542 9.668 hybrid contribution -1.937 -1.324 -0.592 2.420 sum 2.188 6.148 3.950 7.628 Atomic orbital electron populations 1.21838 0.94999 1.01739 1.02118 1.21156 0.95695 0.99854 0.94139 0.90213 1.21558 0.94169 1.00882 0.98331 1.21765 0.96473 1.01573 0.95752 1.21009 0.78527 0.99917 0.96351 0.92128 1.45811 1.07389 1.29978 1.52677 1.17970 0.86948 0.80903 0.78097 1.90788 1.70760 1.39550 1.45666 1.20101 0.93116 1.00234 1.06841 1.26191 1.00186 1.03197 1.03157 1.82822 1.01577 1.19047 1.44217 1.24909 0.98348 1.04460 1.08911 1.24734 1.05362 1.00645 0.84377 1.86507 1.95463 1.36165 1.17976 0.94170 0.73129 0.88959 0.79097 1.20973 0.92146 0.98915 0.98704 1.21850 0.96400 1.00956 0.96999 1.21554 0.94130 1.00616 0.98650 0.91959 0.92619 0.93166 0.92543 0.90103 0.90666 0.89389 0.74812 0.77767 0.87030 0.75297 1.18079 1.19917 0.85350 0.90343 0.94087 0.92934 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.30 9.19 71.98 0.66 0.97 16 2 C -0.09 0.21 2.72 -10.79 -0.03 0.18 16 3 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 4 C -0.11 0.35 5.20 30.59 0.16 0.51 16 5 C -0.12 0.49 5.39 30.59 0.16 0.66 16 6 C 0.15 0.21 2.45 44.99 0.11 0.32 16 7 H 0.06 0.47 7.58 -2.39 -0.02 0.45 16 8 N -0.71 -0.27 5.05 -446.02 -2.25 -2.52 16 9 C 0.57 4.59 7.76 86.59 0.67 5.27 16 10 O -0.59 -10.51 16.46 -4.15 -0.07 -10.57 16 11 C -0.19 -0.68 5.98 -19.87 -0.12 -0.80 16 12 C -0.19 0.83 10.38 67.30 0.70 1.53 16 13 S 0.26 -1.41 20.20 -56.49 -1.14 -2.55 16 14 C -0.25 -0.14 5.65 24.51 0.14 0.00 16 15 C -0.04 0.00 2.94 71.24 0.21 0.21 16 16 O -0.55 -0.81 12.88 -148.98 -1.92 -2.73 16 17 Si 0.75 -2.63 30.92 68.60 2.12 -0.51 16 18 C -0.08 -0.46 9.95 22.67 0.23 -0.24 16 19 C -0.12 -0.24 5.50 30.59 0.17 -0.07 16 20 C -0.11 -0.08 5.20 30.60 0.16 0.08 16 21 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 22 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 23 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 24 H 0.06 -0.05 8.14 -2.38 -0.02 -0.07 16 25 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 26 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 27 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 28 H 0.41 -2.93 7.10 -92.71 -0.66 -3.58 16 29 H 0.21 -2.48 7.01 -2.91 -0.02 -2.50 16 30 H 0.11 0.19 7.96 -2.39 -0.02 0.17 16 31 H 0.40 -2.84 8.70 -74.06 -0.64 -3.49 16 32 H -0.26 0.12 7.11 99.48 0.71 0.83 16 33 H -0.27 -0.89 7.11 99.48 0.71 -0.18 16 34 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.05 0.17 8.14 -2.39 -0.02 0.16 16 38 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 Total: 0.00 -18.89 322.15 -0.24 -19.13 By element: Atomic # 1 Polarization: -8.66 SS G_CDS: -0.20 Total: -8.86 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 3.22 Total: 8.62 kcal Atomic # 7 Polarization: -0.27 SS G_CDS: -2.25 Total: -2.52 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -1.99 Total: -13.30 kcal Atomic # 14 Polarization: -2.63 SS G_CDS: 2.12 Total: -0.51 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -1.14 Total: -2.55 kcal Total: -18.89 -0.24 -19.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_4279154_6894386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.295 kcal (2) G-P(sol) polarization free energy of solvation -18.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds