Wall clock time and date at job start Tue Mar 9 2021 14:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86302 * 109.46761 * 2 1 4 4 C 1.50692 * 109.47167 * 119.99919 * 2 1 3 5 5 C 1.36456 * 120.29518 * 120.00290 * 4 2 1 6 6 C 1.40089 * 119.25573 * 179.97438 * 5 4 2 7 7 C 1.40855 * 132.86866 * 179.97438 * 6 5 4 8 8 C 1.46562 * 126.57462 * 359.97438 * 7 6 5 9 9 O 1.21722 * 120.00601 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99559 * 179.97438 * 8 7 6 11 11 C 1.46509 * 119.99743 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47272 * 325.00206 * 11 10 8 13 13 C 1.52998 * 109.46847 * 85.00178 * 11 10 8 14 14 C 1.52999 * 109.47110 * 60.00136 * 13 11 10 15 15 C 1.52998 * 109.47197 * 59.99835 * 14 13 11 16 16 H 1.09000 * 109.46970 * 60.00152 * 15 14 13 17 17 C 1.52999 * 109.47197 * 180.02562 * 15 14 13 18 18 O 1.42903 * 109.47256 * 295.00241 * 17 15 14 19 19 C 1.52998 * 109.46898 * 299.99903 * 15 14 13 20 20 C 1.52998 * 109.47198 * 205.00182 * 11 10 8 21 21 C 1.40551 * 106.84049 * 180.24739 * 7 6 5 22 22 N 1.30742 * 108.74724 * 359.61495 * 21 7 6 23 23 N 1.36584 * 120.23114 * 359.97438 * 6 5 4 24 24 C 1.36242 * 120.07739 * 0.02562 * 23 6 5 25 25 C 1.35183 * 120.70749 * 359.97438 * 24 23 6 26 26 H 0.96706 * 113.99781 * 60.00139 * 1 2 3 27 27 H 1.09000 * 109.47045 * 240.00809 * 2 1 3 28 28 H 1.48501 * 110.00018 * 60.00463 * 3 2 1 29 29 H 1.48504 * 109.99835 * 181.32072 * 3 2 1 30 30 H 1.07996 * 120.37053 * 359.95420 * 5 4 2 31 31 H 0.96997 * 120.00204 * 0.02562 * 10 8 7 32 32 H 1.09007 * 109.47007 * 179.97438 * 13 11 10 33 33 H 1.08996 * 109.47207 * 299.99740 * 13 11 10 34 34 H 1.08994 * 109.47089 * 299.99570 * 14 13 11 35 35 H 1.09002 * 109.46929 * 179.97438 * 14 13 11 36 36 H 1.08997 * 109.47286 * 174.99802 * 17 15 14 37 37 H 1.09008 * 109.47201 * 54.99582 * 17 15 14 38 38 H 0.96700 * 114.00311 * 180.02562 * 18 17 15 39 39 H 1.09004 * 109.46765 * 179.97438 * 19 15 14 40 40 H 1.09003 * 109.47228 * 299.99474 * 19 15 14 41 41 H 1.08994 * 109.47318 * 180.02562 * 20 11 10 42 42 H 1.09002 * 109.47117 * 59.99940 * 20 11 10 43 43 H 1.08001 * 125.62628 * 179.74214 * 21 7 6 44 44 H 1.08001 * 119.64423 * 180.02562 * 24 23 6 45 45 H 1.08007 * 119.83984 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2304 5 6 2.7163 -1.8203 1.1122 6 6 3.1716 -2.4633 2.2705 7 6 3.9754 -3.6004 2.4822 8 6 4.5748 -4.4507 1.4498 9 8 4.3949 -4.1977 0.2729 10 7 5.3260 -5.5123 1.8037 11 6 5.9256 -6.3620 0.7718 12 1 5.2502 -6.4293 -0.0811 13 6 7.2564 -5.7557 0.3219 14 6 8.2044 -5.6613 1.5191 15 6 8.4479 -7.0604 2.0884 16 1 8.8940 -7.6925 1.3206 17 6 9.3954 -6.9659 3.2860 18 8 10.6757 -6.5089 2.8455 19 6 7.1171 -7.6666 2.5383 20 6 6.1691 -7.7611 1.3411 21 6 4.0871 -3.7669 3.8734 22 7 3.4189 -2.8120 4.4658 23 7 2.8324 -1.9818 3.5029 24 6 2.0482 -0.8729 3.6105 25 6 1.5974 -0.2363 2.5064 26 1 -0.3933 0.4417 -0.7651 27 1 1.7923 -0.5137 -0.8901 28 1 1.5614 2.4679 1.2085 29 1 3.5345 1.7704 -0.0322 30 1 2.9831 -2.1989 0.1367 31 1 5.4696 -5.7138 2.7416 32 1 7.7028 -6.3881 -0.4456 33 1 7.0830 -4.7590 -0.0837 34 1 7.7583 -5.0292 2.2868 35 1 9.1526 -5.2298 1.1985 36 1 9.4988 -7.9487 3.7459 37 1 8.9904 -6.2643 4.0153 38 1 11.3287 -6.4255 3.5539 39 1 7.2905 -8.6635 2.9435 40 1 6.6710 -7.0345 3.3061 41 1 6.6156 -8.3931 0.5735 42 1 5.2210 -8.1929 1.6616 43 1 4.6361 -4.5527 4.3709 44 1 1.7846 -0.4980 4.5885 45 1 0.9762 0.6413 2.6081 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_11618758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:56:06 Heat of formation + Delta-G solvation = -22.876585 kcal Electronic energy + Delta-G solvation = -28744.933862 eV Core-core repulsion = 24730.225515 eV Total energy + Delta-G solvation = -4014.708348 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.43037 -41.17450 -39.49217 -39.10726 -37.43651 -37.28704 -34.77858 -34.34932 -32.29146 -31.90495 -31.72493 -30.08738 -27.39989 -26.36819 -25.08704 -23.97221 -23.62283 -23.07966 -22.08144 -21.50788 -20.18182 -19.36138 -18.45149 -18.24507 -17.96813 -17.69450 -17.09693 -16.92316 -16.67160 -16.44769 -15.98050 -15.81909 -15.76244 -15.50680 -15.00066 -14.89805 -14.68952 -14.59606 -14.29939 -13.96051 -13.91331 -13.45984 -13.42676 -13.18396 -13.12281 -13.01008 -12.59839 -12.42555 -12.20488 -12.12867 -11.99979 -11.74327 -11.55200 -11.30271 -11.09700 -11.00858 -10.86016 -10.80550 -10.25126 -10.07913 -8.91619 -5.02856 -0.70132 -0.26106 0.89350 0.93840 1.21156 1.62769 1.90262 1.95751 2.20922 2.41025 2.94134 3.08587 3.31511 3.39455 3.58966 3.67661 3.68773 3.74182 3.78506 3.87593 3.95138 4.06189 4.11917 4.24457 4.28338 4.33357 4.42913 4.44225 4.46193 4.49799 4.52166 4.64242 4.67900 4.75474 4.77565 4.98817 5.01533 5.03419 5.07084 5.11615 5.15619 5.18014 5.24823 5.41146 5.45188 5.51724 5.57126 6.17166 6.57298 6.84900 6.89613 7.26441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.083 4.083 3 Si 0.804 3.196 4 C -0.032 4.032 5 C -0.120 4.120 6 C 0.148 3.852 7 C -0.337 4.337 8 C 0.599 3.401 9 O -0.590 6.590 10 N -0.705 5.705 11 C 0.150 3.850 12 H 0.070 0.930 13 C -0.127 4.127 14 C -0.101 4.101 15 C -0.086 4.086 16 H 0.069 0.931 17 C 0.076 3.924 18 O -0.598 6.598 19 C -0.110 4.110 20 C -0.119 4.119 21 C 0.131 3.869 22 N -0.336 5.336 23 N -0.275 5.275 24 C 0.110 3.890 25 C -0.151 4.151 26 H 0.409 0.591 27 H 0.091 0.909 28 H -0.271 1.271 29 H -0.306 1.306 30 H 0.154 0.846 31 H 0.409 0.591 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.394 0.606 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.237 0.763 44 H 0.206 0.794 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.467 0.976 1.551 2.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.191 4.191 3 Si 0.706 3.294 4 C -0.038 4.038 5 C -0.140 4.140 6 C 0.027 3.973 7 C -0.351 4.351 8 C 0.388 3.612 9 O -0.473 6.473 10 N -0.357 5.357 11 C 0.046 3.954 12 H 0.088 0.912 13 C -0.166 4.166 14 C -0.139 4.139 15 C -0.105 4.105 16 H 0.088 0.912 17 C -0.002 4.002 18 O -0.406 6.406 19 C -0.147 4.147 20 C -0.157 4.157 21 C -0.050 4.050 22 N -0.156 5.156 23 N -0.039 5.039 24 C -0.016 4.016 25 C -0.172 4.172 26 H 0.261 0.739 27 H 0.109 0.891 28 H -0.197 1.197 29 H -0.234 1.234 30 H 0.171 0.829 31 H 0.247 0.753 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.244 0.756 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.253 0.747 44 H 0.223 0.777 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.627 1.803 2.367 3.392 hybrid contribution 0.854 -0.895 0.219 1.256 sum -0.773 0.908 2.586 2.848 Atomic orbital electron populations 1.86425 1.15959 1.82626 1.51668 1.24891 0.86858 1.11507 0.95849 0.94248 0.76929 0.72803 0.85380 1.19872 0.94808 0.93046 0.96042 1.20698 1.00148 0.95296 0.97851 1.19551 0.96162 0.94913 0.86713 1.19766 1.16940 1.03954 0.94468 1.16977 0.77356 0.80096 0.86759 1.90745 1.63537 1.72880 1.20089 1.45677 1.51184 1.27994 1.10843 1.20917 0.93449 0.90276 0.90780 0.91158 1.21876 0.95574 1.00637 0.98519 1.21383 0.98271 0.96942 0.97260 1.21169 0.95304 0.96637 0.97389 0.91241 1.22334 0.83291 0.98623 0.95940 1.86444 1.23452 1.90076 1.40660 1.21518 0.93392 1.02138 0.97695 1.21782 1.00809 0.94105 0.99013 1.24622 0.93441 0.95749 0.91142 1.77559 1.19628 1.07027 1.11403 1.46303 1.32527 1.19569 1.05506 1.22185 0.91410 0.84613 1.03377 1.21164 1.02920 1.03156 0.89983 0.73870 0.89093 1.19726 1.23447 0.82855 0.75303 0.90585 0.93955 0.92199 0.93171 0.92358 0.92821 0.75612 0.89681 0.90663 0.89534 0.89905 0.74725 0.77701 0.79951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.60 12.76 -148.98 -1.90 -0.30 16 2 C -0.08 0.14 2.81 71.23 0.20 0.34 16 3 Si 0.80 -3.45 31.96 68.60 2.19 -1.26 16 4 C -0.03 -0.14 4.53 -19.82 -0.09 -0.23 16 5 C -0.12 -1.07 9.35 22.30 0.21 -0.87 16 6 C 0.15 1.55 6.76 39.49 0.27 1.81 16 7 C -0.34 -2.87 6.17 -19.90 -0.12 -3.00 16 8 C 0.60 5.71 7.75 86.41 0.67 6.37 16 9 O -0.59 -9.98 15.37 -4.42 -0.07 -10.05 16 10 N -0.70 -1.25 4.22 -446.58 -1.89 -3.14 16 11 C 0.15 0.27 2.78 44.99 0.13 0.40 16 12 H 0.07 0.44 7.58 -2.39 -0.02 0.42 16 13 C -0.13 -0.48 5.60 30.59 0.17 -0.31 16 14 C -0.10 -0.21 4.94 30.59 0.15 -0.06 16 15 C -0.09 0.14 2.43 -10.80 -0.03 0.12 16 16 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 17 C 0.08 -0.19 6.43 71.98 0.46 0.27 16 18 O -0.60 -0.88 13.19 -148.98 -1.97 -2.85 16 19 C -0.11 0.67 5.03 30.59 0.15 0.82 16 20 C -0.12 0.49 5.61 30.59 0.17 0.66 16 21 C 0.13 0.44 11.44 85.42 0.98 1.41 16 22 N -0.34 -2.56 12.57 -56.62 -0.71 -3.27 16 23 N -0.27 -2.23 3.86 -187.27 -0.72 -2.95 16 24 C 0.11 0.27 11.17 83.30 0.93 1.20 16 25 C -0.15 -0.25 8.67 22.03 0.19 -0.06 16 26 H 0.41 -5.49 8.74 -74.05 -0.65 -6.14 16 27 H 0.09 -0.33 7.71 -2.39 -0.02 -0.34 16 28 H -0.27 0.14 7.07 99.48 0.70 0.84 16 29 H -0.31 -1.30 7.11 99.48 0.71 -0.60 16 30 H 0.15 1.56 7.01 -2.91 -0.02 1.54 16 31 H 0.41 -1.77 5.79 -92.71 -0.54 -2.30 16 32 H 0.08 0.21 8.14 -2.38 -0.02 0.19 16 33 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.06 0.11 7.60 -2.39 -0.02 0.10 16 35 H 0.05 0.31 7.82 -2.39 -0.02 0.29 16 36 H 0.06 -0.29 8.14 -2.39 -0.02 -0.31 16 37 H 0.05 -0.24 8.14 -2.38 -0.02 -0.26 16 38 H 0.39 -2.62 9.12 -74.06 -0.68 -3.30 16 39 H 0.08 -0.68 8.14 -2.38 -0.02 -0.70 16 40 H 0.07 -0.64 6.51 -2.39 -0.02 -0.66 16 41 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 42 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 43 H 0.24 -1.64 7.46 -2.91 -0.02 -1.67 16 44 H 0.21 -0.91 8.06 -2.91 -0.02 -0.94 16 45 H 0.18 -0.59 7.52 -2.91 -0.02 -0.61 16 Total: 0.00 -28.43 365.63 -1.40 -29.83 By element: Atomic # 1 Polarization: -14.12 SS G_CDS: -0.78 Total: -14.90 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 4.44 Total: 8.89 kcal Atomic # 7 Polarization: -6.04 SS G_CDS: -3.32 Total: -9.36 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -3.93 Total: -13.19 kcal Atomic # 14 Polarization: -3.45 SS G_CDS: 2.19 Total: -1.26 kcal Total: -28.43 -1.40 -29.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_11618758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.956 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds