Wall clock time and date at job start Tue Mar 9 2021 14:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86298 * 109.47313 * 2 1 4 4 C 1.50701 * 109.47241 * 120.00486 * 2 1 3 5 5 C 1.38337 * 119.87119 * 64.99602 * 4 2 1 6 6 C 1.38006 * 120.12406 * 180.02562 * 5 4 2 7 7 C 1.39397 * 119.87340 * 359.97438 * 6 5 4 8 8 C 1.48275 * 120.13137 * 180.02562 * 7 6 5 9 9 C 1.39505 * 119.98027 * 180.02562 * 8 7 6 10 10 C 1.37668 * 120.02342 * 180.02562 * 9 8 7 11 11 C 1.39711 * 119.97510 * 359.97438 * 10 9 8 12 12 C 1.47721 * 120.02191 * 179.97438 * 11 10 9 13 13 O 1.21578 * 119.99901 * 0.02562 * 12 11 10 14 14 N 1.34770 * 119.99833 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99553 * 180.02562 * 14 12 11 16 16 H 1.08992 * 109.47680 * 324.99444 * 15 14 12 17 17 C 1.52999 * 109.47290 * 85.00084 * 15 14 12 18 18 C 1.52996 * 109.47461 * 59.99749 * 17 15 14 19 19 C 1.52995 * 109.47236 * 59.99859 * 18 17 15 20 20 H 1.09007 * 109.46945 * 60.00508 * 19 18 17 21 21 C 1.53006 * 109.47234 * 180.02562 * 19 18 17 22 22 O 1.42895 * 109.47036 * 295.00525 * 21 19 18 23 23 C 1.52996 * 109.47185 * 300.00089 * 19 18 17 24 24 C 1.52996 * 109.46951 * 60.00193 * 23 19 18 25 25 C 1.39707 * 119.95031 * 0.26309 * 11 10 9 26 26 C 1.37660 * 119.97718 * 359.45853 * 25 11 10 27 27 C 1.39404 * 119.74520 * 0.27764 * 7 6 5 28 28 C 1.37999 * 119.86881 * 359.46856 * 27 7 6 29 29 H 0.96707 * 114.00057 * 299.99470 * 1 2 3 30 30 H 1.09005 * 109.46501 * 239.99858 * 2 1 3 31 31 H 1.48498 * 109.99885 * 178.68308 * 3 2 1 32 32 H 1.48497 * 110.00078 * 300.00237 * 3 2 1 33 33 H 1.07997 * 119.94156 * 359.97438 * 5 4 2 34 34 H 1.08004 * 120.06117 * 179.97438 * 6 5 4 35 35 H 1.07992 * 119.98629 * 359.97338 * 9 8 7 36 36 H 1.08002 * 120.00754 * 180.02562 * 10 9 8 37 37 H 0.97002 * 120.00377 * 359.97438 * 14 12 11 38 38 H 1.08997 * 109.47294 * 179.97438 * 17 15 14 39 39 H 1.09000 * 109.46971 * 299.99398 * 17 15 14 40 40 H 1.09006 * 109.46758 * 299.99685 * 18 17 15 41 41 H 1.09003 * 109.47204 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.47002 * 55.00002 * 21 19 18 43 43 H 1.08993 * 109.46955 * 175.00440 * 21 19 18 44 44 H 0.96700 * 113.99916 * 179.97438 * 22 21 19 45 45 H 1.09006 * 109.46822 * 179.97438 * 23 19 18 46 46 H 1.08997 * 109.47474 * 299.99873 * 23 19 18 47 47 H 1.08996 * 109.47312 * 60.00123 * 24 23 19 48 48 H 1.09007 * 109.46984 * 179.97438 * 24 23 19 49 49 H 1.07998 * 120.00652 * 179.72080 * 25 11 10 50 50 H 1.08003 * 119.98708 * 180.27834 * 26 25 11 51 51 H 1.08008 * 120.06458 * 179.72560 * 27 7 6 52 52 H 1.08003 * 119.93598 * 180.27135 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.6830 -2.0613 1.3956 6 6 2.1401 -2.7171 2.5206 7 6 2.8538 -2.0157 3.4911 8 6 3.3481 -2.7147 4.7018 9 6 4.0616 -2.0096 5.6713 10 6 4.5214 -2.6578 6.7954 11 6 4.2729 -4.0221 6.9653 12 6 4.7663 -4.7188 8.1708 13 8 5.3885 -4.1048 9.0158 14 7 4.5267 -6.0349 8.3340 15 6 5.0156 -6.7257 9.5299 16 1 5.9755 -6.3033 9.8266 17 6 4.0078 -6.5508 10.6677 18 6 2.6604 -7.1439 10.2512 19 6 2.8312 -8.6333 9.9457 20 1 3.1950 -9.1473 10.8355 21 6 1.4838 -9.2263 9.5286 22 8 0.5762 -9.1680 10.6308 23 6 3.8389 -8.8082 8.8079 24 6 5.1864 -8.2152 9.2244 25 6 3.5626 -4.7282 5.9913 26 6 3.0987 -4.0769 4.8708 27 6 3.0965 -0.6535 3.3217 28 6 2.6390 -0.0094 2.1902 29 1 -0.3933 0.4417 0.7651 30 1 1.7922 -0.5139 -0.8900 31 1 3.5346 1.7702 0.0321 32 1 1.5615 2.4679 -1.2084 33 1 1.1296 -2.6036 0.6433 34 1 1.9453 -3.7716 2.6488 35 1 4.2540 -0.9552 5.5396 36 1 5.0734 -2.1116 7.5461 37 1 4.0299 -6.5247 7.6600 38 1 4.3713 -7.0651 11.5573 39 1 3.8861 -5.4897 10.8853 40 1 2.2966 -6.6298 9.3615 41 1 1.9423 -7.0189 11.0617 42 1 1.0784 -8.6550 8.6935 43 1 1.6218 -10.2642 9.2260 44 1 -0.3005 -9.5275 10.4377 45 1 3.9610 -9.8694 8.5906 46 1 3.4752 -8.2942 7.9182 47 1 5.5502 -8.7292 10.1141 48 1 5.9045 -8.3402 8.4139 49 1 3.3738 -5.7838 6.1196 50 1 2.5457 -4.6217 4.1199 51 1 3.6451 -0.1041 4.0725 52 1 2.8302 1.0450 2.0557 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_13158362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:57:07 Heat of formation + Delta-G solvation = -73.481233 kcal Electronic energy + Delta-G solvation = -32216.051897 eV Core-core repulsion = 27918.011089 eV Total energy + Delta-G solvation = -4298.040808 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.182 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.68219 -40.89854 -39.90015 -39.00518 -37.54751 -37.41444 -34.96462 -33.99597 -32.64015 -31.90926 -31.76971 -31.49950 -30.44541 -27.12740 -26.28185 -24.65828 -24.53645 -23.67954 -22.67296 -22.54026 -22.05880 -21.41939 -20.19423 -19.38166 -18.47166 -18.19043 -17.76892 -17.15866 -16.80155 -16.65620 -16.31113 -16.24032 -15.95281 -15.92932 -15.52466 -15.39887 -15.11462 -15.06781 -14.94521 -14.84843 -14.64603 -14.30617 -14.23387 -14.06303 -13.90810 -13.59344 -13.50158 -13.22312 -13.14814 -13.02854 -12.74868 -12.54495 -12.42978 -12.14947 -12.11406 -11.94450 -11.60362 -11.57343 -11.32846 -11.13073 -11.07012 -10.81211 -10.76013 -10.41516 -10.12447 -10.06906 -9.95627 -9.07446 -5.01340 -0.69007 0.34399 0.40535 0.50387 1.30399 1.62197 1.79924 1.95526 2.08521 2.61025 3.01198 3.31071 3.40073 3.54154 3.61181 3.64693 3.69719 3.72681 3.80422 3.86866 3.91082 4.01473 4.03239 4.06665 4.26261 4.26892 4.29166 4.37141 4.40909 4.42383 4.47635 4.48040 4.49734 4.63951 4.65427 4.67983 4.73505 4.75931 4.88607 4.91479 5.00617 5.04196 5.08479 5.09048 5.12852 5.14747 5.20367 5.22203 5.27186 5.39178 5.41591 5.42548 5.49773 5.50599 5.65236 5.79431 5.93256 6.45977 6.75728 6.90711 7.13795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.073 4.073 3 Si 0.771 3.229 4 C -0.119 4.119 5 C -0.103 4.103 6 C -0.108 4.108 7 C -0.060 4.060 8 C -0.023 4.023 9 C -0.122 4.122 10 C -0.071 4.071 11 C -0.152 4.152 12 C 0.555 3.445 13 O -0.581 6.581 14 N -0.703 5.703 15 C 0.146 3.854 16 H 0.070 0.930 17 C -0.129 4.129 18 C -0.101 4.101 19 C -0.088 4.088 20 H 0.069 0.931 21 C 0.076 3.924 22 O -0.598 6.598 23 C -0.110 4.110 24 C -0.120 4.120 25 C -0.075 4.075 26 C -0.120 4.120 27 C -0.107 4.107 28 C -0.118 4.118 29 H 0.395 0.605 30 H 0.107 0.893 31 H -0.287 1.287 32 H -0.301 1.301 33 H 0.131 0.869 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.127 0.873 37 H 0.411 0.589 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.395 0.605 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.155 0.845 50 H 0.156 0.844 51 H 0.147 0.853 52 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.085 -3.634 -2.597 5.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.183 4.183 3 Si 0.678 3.322 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.125 4.125 7 C -0.060 4.060 8 C -0.023 4.023 9 C -0.139 4.139 10 C -0.090 4.090 11 C -0.155 4.155 12 C 0.343 3.657 13 O -0.463 6.463 14 N -0.356 5.356 15 C 0.041 3.959 16 H 0.088 0.912 17 C -0.167 4.167 18 C -0.139 4.139 19 C -0.106 4.106 20 H 0.087 0.913 21 C -0.001 4.001 22 O -0.407 6.407 23 C -0.147 4.147 24 C -0.158 4.158 25 C -0.094 4.094 26 C -0.137 4.137 27 C -0.125 4.125 28 C -0.136 4.136 29 H 0.245 0.755 30 H 0.124 0.876 31 H -0.214 1.214 32 H -0.230 1.230 33 H 0.149 0.851 34 H 0.164 0.836 35 H 0.167 0.833 36 H 0.145 0.855 37 H 0.250 0.750 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.244 0.756 45 H 0.104 0.896 46 H 0.093 0.907 47 H 0.105 0.895 48 H 0.102 0.898 49 H 0.172 0.828 50 H 0.174 0.826 51 H 0.164 0.836 52 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.567 -2.702 -2.660 4.102 hybrid contribution -0.461 -0.782 -0.508 1.040 sum -2.028 -3.484 -3.168 5.127 Atomic orbital electron populations 1.86474 1.17146 1.82158 1.50519 1.25146 0.85333 1.10571 0.97265 0.93771 0.77887 0.75641 0.84918 1.20529 0.99361 0.95205 0.96879 1.21109 0.99037 0.94005 0.97929 1.21515 0.96895 1.01005 0.93117 1.18930 0.99205 0.93885 0.93946 1.19144 0.96067 0.93913 0.93158 1.21391 0.98192 1.01282 0.93053 1.21260 0.96968 0.93407 0.97365 1.20021 1.04260 0.95241 0.95971 1.18585 0.78722 0.82515 0.85832 1.90770 1.42730 1.67077 1.45680 1.45926 1.57154 1.08514 1.24009 1.20969 0.96932 0.93381 0.84584 0.91153 1.21883 0.96165 1.00305 0.98377 1.21388 0.96055 0.95244 1.01168 1.21179 0.94373 0.95495 0.99562 0.91296 1.22325 0.89546 0.99907 0.88372 1.86444 1.27587 1.86723 1.39898 1.21516 0.93528 1.02424 0.97260 1.21791 0.98288 0.92125 1.03590 1.21431 0.94895 1.00697 0.92351 1.21463 1.00301 0.93547 0.98395 1.21494 0.99260 0.93708 0.98019 1.21134 0.98381 1.00197 0.93853 0.75468 0.87585 1.21413 1.22972 0.85079 0.83625 0.83346 0.85516 0.74999 0.90583 0.93832 0.92032 0.93018 0.92672 0.92405 0.75567 0.89629 0.90681 0.89543 0.89846 0.82783 0.82633 0.83567 0.83660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.37 12.83 -148.98 -1.91 -1.54 16 2 C -0.07 0.11 2.80 71.24 0.20 0.30 16 3 Si 0.77 -2.02 29.79 68.60 2.04 0.02 16 4 C -0.12 0.16 5.36 -19.82 -0.11 0.05 16 5 C -0.10 0.10 9.67 22.24 0.21 0.31 16 6 C -0.11 0.23 9.43 22.49 0.21 0.44 16 7 C -0.06 0.06 5.88 -20.05 -0.12 -0.06 16 8 C -0.02 0.02 5.88 -19.99 -0.12 -0.10 16 9 C -0.12 -0.03 9.41 22.44 0.21 0.18 16 10 C -0.07 -0.27 9.58 22.49 0.22 -0.06 16 11 C -0.15 -0.45 5.88 -20.06 -0.12 -0.57 16 12 C 0.55 3.60 7.73 86.75 0.67 4.27 16 13 O -0.58 -8.87 16.00 -3.96 -0.06 -8.94 16 14 N -0.70 0.23 4.18 -445.52 -1.86 -1.64 16 15 C 0.15 0.07 2.78 44.99 0.13 0.20 16 16 H 0.07 0.36 7.58 -2.39 -0.02 0.34 16 17 C -0.13 -0.33 5.60 30.59 0.17 -0.16 16 18 C -0.10 -0.06 4.94 30.59 0.15 0.09 16 19 C -0.09 0.26 2.43 -10.79 -0.03 0.23 16 20 H 0.07 -0.02 8.14 -2.38 -0.02 -0.04 16 21 C 0.08 -0.29 6.43 71.98 0.46 0.17 16 22 O -0.60 -0.16 13.20 -148.98 -1.97 -2.13 16 23 C -0.11 0.81 5.03 30.59 0.15 0.96 16 24 C -0.12 0.63 5.61 30.59 0.17 0.80 16 25 C -0.08 0.24 9.52 22.49 0.21 0.45 16 26 C -0.12 0.41 9.41 22.44 0.21 0.62 16 27 C -0.11 0.24 9.43 22.49 0.21 0.45 16 28 C -0.12 0.33 8.65 22.23 0.19 0.52 16 29 H 0.40 -3.40 8.70 -74.05 -0.64 -4.04 16 30 H 0.11 -0.02 7.96 -2.38 -0.02 -0.04 16 31 H -0.29 -0.67 7.11 99.48 0.71 0.04 16 32 H -0.30 -1.59 7.11 99.48 0.71 -0.88 16 33 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 34 H 0.15 -0.95 6.19 -2.91 -0.02 -0.97 16 35 H 0.15 -0.56 6.19 -2.91 -0.02 -0.58 16 36 H 0.13 0.72 7.64 -2.91 -0.02 0.69 16 37 H 0.41 -2.60 4.88 -92.71 -0.45 -3.05 16 38 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.04 0.34 8.14 -2.39 -0.02 0.33 16 40 H 0.06 0.00 7.60 -2.38 -0.02 -0.02 16 41 H 0.05 0.25 7.82 -2.39 -0.02 0.23 16 42 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H 0.06 -0.36 8.14 -2.39 -0.02 -0.38 16 44 H 0.39 -3.10 9.12 -74.06 -0.68 -3.77 16 45 H 0.09 -0.78 8.14 -2.38 -0.02 -0.80 16 46 H 0.07 -0.76 6.50 -2.39 -0.02 -0.77 16 47 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 48 H 0.08 -0.55 8.14 -2.38 -0.02 -0.57 16 49 H 0.15 -1.51 6.39 -2.91 -0.02 -1.52 16 50 H 0.16 -1.32 6.19 -2.91 -0.02 -1.34 16 51 H 0.15 -0.87 6.19 -2.91 -0.02 -0.89 16 52 H 0.15 -1.00 4.89 -2.91 -0.01 -1.01 16 Total: 0.00 -23.98 408.68 -1.21 -25.19 By element: Atomic # 1 Polarization: -19.32 SS G_CDS: -0.75 Total: -20.08 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 3.30 Total: 9.10 kcal Atomic # 7 Polarization: 0.23 SS G_CDS: -1.86 Total: -1.64 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -3.94 Total: -12.60 kcal Atomic # 14 Polarization: -2.02 SS G_CDS: 2.04 Total: 0.02 kcal Total: -23.98 -1.21 -25.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_13158362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.290 kcal (2) G-P(sol) polarization free energy of solvation -23.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds