Wall clock time and date at job start Tue Mar 9 2021 14:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86303 * 109.47099 * 2 1 4 4 C 1.50703 * 109.47272 * 239.99995 * 2 1 3 5 5 C 1.38897 * 119.67509 * 119.97517 * 4 2 1 6 6 C 1.36480 * 120.61469 * 179.97438 * 5 4 2 7 7 C 1.40064 * 119.82724 * 0.04571 * 6 5 4 8 8 C 1.41597 * 133.37926 * 179.97438 * 7 6 5 9 9 C 1.35867 * 107.72596 * 180.02562 * 8 7 6 10 10 C 1.47058 * 125.42435 * 179.97438 * 9 8 7 11 11 O 1.21653 * 119.99985 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99966 * 179.74988 * 10 9 8 13 13 C 1.46504 * 119.99854 * 180.27718 * 12 10 9 14 14 H 1.09001 * 109.47451 * 34.99522 * 13 12 10 15 15 C 1.52994 * 109.46860 * 154.99819 * 13 12 10 16 16 C 1.53000 * 109.47517 * 59.99632 * 15 13 12 17 17 C 1.52997 * 109.46889 * 59.99829 * 16 15 13 18 18 H 1.09007 * 109.47320 * 60.00316 * 17 16 15 19 19 C 1.52997 * 109.47394 * 180.02562 * 17 16 15 20 20 O 1.42894 * 109.47471 * 185.00013 * 19 17 16 21 21 C 1.52998 * 109.47499 * 300.00242 * 17 16 15 22 22 C 1.52997 * 109.46930 * 274.99613 * 13 12 10 23 23 N 1.38146 * 109.14718 * 0.22562 * 9 8 7 24 24 C 1.37485 * 108.79179 * 359.62504 * 23 9 8 25 25 C 1.37715 * 119.67354 * 299.99910 * 4 2 1 26 26 H 0.96692 * 114.00338 * 60.00107 * 1 2 3 27 27 H 1.09005 * 109.47329 * 119.99672 * 2 1 3 28 28 H 1.48498 * 109.99923 * 60.00078 * 3 2 1 29 29 H 1.48502 * 110.00063 * 181.31972 * 3 2 1 30 30 H 1.08003 * 119.69201 * 359.97438 * 5 4 2 31 31 H 1.07997 * 120.08499 * 180.02562 * 6 5 4 32 32 H 1.07999 * 126.13547 * 0.02562 * 8 7 6 33 33 H 0.97000 * 119.99736 * 0.26993 * 12 10 9 34 34 H 1.09007 * 109.47166 * 179.97438 * 15 13 12 35 35 H 1.08998 * 109.47170 * 299.99435 * 15 13 12 36 36 H 1.08996 * 109.47417 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.47396 * 300.00182 * 16 15 13 38 38 H 1.09001 * 109.47226 * 305.00176 * 19 17 16 39 39 H 1.08995 * 109.47137 * 64.99784 * 19 17 16 40 40 H 0.96707 * 114.00197 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.47488 * 180.02562 * 21 17 16 42 42 H 1.09007 * 109.46895 * 300.00334 * 21 17 16 43 43 H 1.09000 * 109.47470 * 59.99994 * 22 13 12 44 44 H 1.08998 * 109.47338 * 180.02562 * 22 13 12 45 45 H 0.96997 * 125.60336 * 179.74424 * 23 9 8 46 46 H 1.08001 * 120.09710 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7290 -0.0287 -2.1406 6 6 3.1949 -0.6535 -3.2609 7 6 2.8665 -1.9942 -3.4985 8 6 3.1814 -2.9033 -4.5375 9 6 2.5834 -4.0880 -4.2459 10 6 2.6562 -5.3047 -5.0686 11 8 3.2928 -5.3009 -6.1053 12 7 2.0223 -6.4258 -4.6712 13 6 2.0998 -7.6397 -5.4878 14 1 3.0838 -7.7027 -5.9526 15 6 1.8752 -8.8659 -4.6009 16 6 0.4941 -8.7775 -3.9485 17 6 -0.5814 -8.7304 -5.0356 18 1 -0.5238 -9.6336 -5.6432 19 6 -1.9625 -8.6412 -4.3833 20 8 -2.9716 -8.7145 -5.3924 21 6 -0.3568 -7.5041 -5.9225 22 6 1.0244 -7.5926 -6.5749 23 7 1.8916 -3.9657 -3.0565 24 6 2.0567 -2.6877 -2.5774 25 6 1.5946 -2.0289 -1.4417 26 1 -0.3933 0.4416 -0.7650 27 1 1.7923 -0.5138 0.8900 28 1 1.5614 2.4679 1.2085 29 1 3.5346 1.7703 -0.0321 30 1 2.9830 1.0053 -1.9599 31 1 3.8149 -0.1154 -3.9627 32 1 3.7880 -2.6927 -5.4058 33 1 1.5148 -6.4288 -3.8446 34 1 1.9324 -9.7692 -5.2085 35 1 2.6414 -8.8995 -3.8265 36 1 0.3339 -9.6513 -3.3170 37 1 0.4364 -7.8743 -3.3410 38 1 -2.0878 -9.4675 -3.6835 39 1 -2.0514 -7.6956 -3.8486 40 1 -3.8746 -8.6645 -5.0500 41 1 -1.1233 -7.4702 -6.6968 42 1 -0.4144 -6.6008 -5.3150 43 1 1.1843 -6.7189 -7.2067 44 1 1.0817 -8.4959 -7.1822 45 1 1.3756 -4.6669 -2.6287 46 1 0.9731 -2.5501 -0.7286 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_13158378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:57:11 Heat of formation + Delta-G solvation = -67.926069 kcal Electronic energy + Delta-G solvation = -28290.767899 eV Core-core repulsion = 24339.531970 eV Total energy + Delta-G solvation = -3951.235929 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.74776 -41.25301 -39.62412 -38.88829 -37.51121 -36.88098 -34.96513 -33.29579 -32.06242 -31.82789 -30.78094 -30.40908 -27.18661 -26.23336 -24.50870 -23.73607 -23.26454 -22.22917 -22.00037 -21.40017 -20.29045 -19.71747 -18.42330 -18.24981 -17.78976 -17.07892 -16.88685 -16.67485 -16.33479 -16.05803 -15.94417 -15.56803 -15.50495 -15.35607 -14.88529 -14.84294 -14.72342 -14.68617 -14.48948 -14.11607 -13.97393 -13.53108 -13.27500 -13.16817 -13.04735 -12.58839 -12.53333 -12.48573 -12.19595 -12.02823 -11.64989 -11.63402 -11.41352 -11.38490 -11.14890 -10.97969 -10.84703 -10.43152 -10.26692 -9.34097 -8.84765 -4.93968 -0.38807 0.51562 0.93258 1.34933 1.68393 1.73446 1.95072 2.02456 2.16151 2.76382 3.26767 3.46780 3.56271 3.64676 3.68437 3.69506 3.72735 3.85805 3.99329 4.02927 4.22012 4.24379 4.28433 4.36335 4.37880 4.42803 4.44557 4.45761 4.49653 4.59957 4.61468 4.69439 4.69967 4.86872 4.96217 4.97394 5.00051 5.04516 5.10397 5.15622 5.28268 5.33729 5.37435 5.39589 5.43547 5.52539 5.56510 5.96727 6.23112 6.40334 6.79560 6.86922 6.93619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.070 4.070 3 Si 0.776 3.224 4 C -0.088 4.088 5 C -0.148 4.148 6 C -0.058 4.058 7 C -0.134 4.134 8 C -0.118 4.118 9 C 0.010 3.990 10 C 0.585 3.415 11 O -0.560 6.560 12 N -0.704 5.704 13 C 0.146 3.854 14 H 0.077 0.923 15 C -0.120 4.120 16 C -0.110 4.110 17 C -0.087 4.087 18 H 0.071 0.929 19 C 0.076 3.924 20 O -0.597 6.597 21 C -0.101 4.101 22 C -0.129 4.129 23 N -0.564 5.564 24 C 0.108 3.892 25 C -0.109 4.109 26 H 0.396 0.604 27 H 0.110 0.890 28 H -0.302 1.302 29 H -0.286 1.286 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.407 0.593 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.395 0.605 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.079 0.921 45 H 0.430 0.570 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.348 -0.969 3.401 4.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.180 4.180 3 Si 0.683 3.317 4 C -0.090 4.090 5 C -0.166 4.166 6 C -0.077 4.077 7 C -0.139 4.139 8 C -0.145 4.145 9 C -0.100 4.100 10 C 0.372 3.628 11 O -0.438 6.438 12 N -0.356 5.356 13 C 0.043 3.957 14 H 0.095 0.905 15 C -0.158 4.158 16 C -0.148 4.148 17 C -0.106 4.106 18 H 0.089 0.911 19 C -0.002 4.002 20 O -0.406 6.406 21 C -0.139 4.139 22 C -0.168 4.168 23 N -0.170 5.170 24 C -0.003 4.003 25 C -0.130 4.130 26 H 0.246 0.754 27 H 0.127 0.873 28 H -0.230 1.230 29 H -0.213 1.213 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.172 0.828 33 H 0.245 0.755 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.245 0.755 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.270 0.730 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.896 -0.957 3.249 3.882 hybrid contribution -0.792 -0.920 0.851 1.483 sum -2.688 -1.877 4.100 5.250 Atomic orbital electron populations 1.86459 1.17098 1.82146 1.50567 1.25148 0.85321 1.10658 0.96893 0.93568 0.77972 0.75537 0.84653 1.20160 0.98155 0.93817 0.96914 1.20696 1.00440 1.00521 0.94942 1.20636 0.97920 0.91805 0.97307 1.18433 1.03384 0.95650 0.96428 1.21100 1.02275 0.91079 1.00090 1.20008 1.03637 0.96218 0.90146 1.17315 0.78924 0.82395 0.84195 1.90856 1.43593 1.84157 1.25211 1.45902 1.52266 1.10711 1.26721 1.21036 0.99297 0.83702 0.91712 0.90482 1.21801 0.97857 0.96598 0.99568 1.21516 0.92846 1.03418 0.96994 1.21179 0.93376 0.98789 0.97258 0.91099 1.22319 0.87611 1.00496 0.89761 1.86444 1.19538 1.97235 1.37344 1.21395 0.95806 0.97760 0.98955 1.21898 0.94963 1.02259 0.97669 1.41767 1.44653 1.11314 1.19287 1.18445 1.00128 0.85068 0.96630 1.19983 1.02789 0.94403 0.95823 0.75425 0.87288 1.23031 1.21269 0.83617 0.83510 0.82805 0.75543 0.89237 0.89850 0.89662 0.90980 0.92453 0.92903 0.75547 0.92900 0.92313 0.93476 0.90256 0.72962 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.89 12.76 -148.98 -1.90 -1.01 16 2 C -0.07 0.14 2.81 71.24 0.20 0.34 16 3 Si 0.78 -2.41 29.75 68.60 2.04 -0.37 16 4 C -0.09 0.08 5.40 -19.83 -0.11 -0.02 16 5 C -0.15 0.24 8.59 22.02 0.19 0.42 16 6 C -0.06 -0.02 10.06 22.30 0.22 0.20 16 7 C -0.13 -0.49 6.16 -21.36 -0.13 -0.62 16 8 C -0.12 -0.63 10.53 22.55 0.24 -0.39 16 9 C 0.01 0.03 6.97 39.91 0.28 0.31 16 10 C 0.58 3.06 7.76 86.56 0.67 3.74 16 11 O -0.56 -7.55 16.50 -4.20 -0.07 -7.62 16 12 N -0.70 1.23 4.23 -446.15 -1.89 -0.65 16 13 C 0.15 -0.16 2.78 44.99 0.13 -0.04 16 14 H 0.08 0.22 7.58 -2.39 -0.02 0.21 16 15 C -0.12 0.77 5.61 30.59 0.17 0.94 16 16 C -0.11 0.89 5.03 30.59 0.15 1.04 16 17 C -0.09 0.32 2.43 -10.80 -0.03 0.29 16 18 H 0.07 -0.08 8.14 -2.38 -0.02 -0.10 16 19 C 0.08 -0.31 6.43 71.98 0.46 0.15 16 20 O -0.60 0.02 13.19 -148.98 -1.97 -1.94 16 21 C -0.10 0.03 4.94 30.60 0.15 0.18 16 22 C -0.13 -0.13 5.60 30.60 0.17 0.04 16 23 N -0.56 0.86 6.07 -177.19 -1.08 -0.22 16 24 C 0.11 0.18 7.25 39.13 0.28 0.46 16 25 C -0.11 0.01 9.61 22.37 0.22 0.22 16 26 H 0.40 -3.66 8.70 -74.06 -0.64 -4.30 16 27 H 0.11 -0.13 7.96 -2.38 -0.02 -0.15 16 28 H -0.30 -1.40 7.11 99.48 0.71 -0.69 16 29 H -0.29 -0.49 7.11 99.48 0.71 0.22 16 30 H 0.15 -0.84 4.82 -2.91 -0.01 -0.85 16 31 H 0.15 -0.52 8.06 -2.91 -0.02 -0.54 16 32 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 33 H 0.41 -3.05 5.92 -92.71 -0.55 -3.60 16 34 H 0.09 -0.60 8.14 -2.38 -0.02 -0.61 16 35 H 0.08 -0.63 8.14 -2.39 -0.02 -0.65 16 36 H 0.08 -0.82 8.14 -2.39 -0.02 -0.84 16 37 H 0.07 -0.77 6.51 -2.39 -0.02 -0.78 16 38 H 0.06 -0.37 8.14 -2.39 -0.02 -0.39 16 39 H 0.05 -0.33 8.14 -2.39 -0.02 -0.35 16 40 H 0.40 -3.16 9.12 -74.05 -0.68 -3.84 16 41 H 0.05 0.21 7.82 -2.39 -0.02 0.19 16 42 H 0.06 -0.05 7.60 -2.38 -0.02 -0.07 16 43 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 45 H 0.43 -3.52 8.12 -92.71 -0.75 -4.27 16 46 H 0.14 -0.31 8.06 -2.91 -0.02 -0.33 16 Total: 0.00 -22.14 368.14 -3.12 -25.26 By element: Atomic # 1 Polarization: -19.19 SS G_CDS: -1.54 Total: -20.73 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 3.27 Total: 7.28 kcal Atomic # 7 Polarization: 2.09 SS G_CDS: -2.96 Total: -0.87 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -3.94 Total: -10.57 kcal Atomic # 14 Polarization: -2.41 SS G_CDS: 2.04 Total: -0.37 kcal Total: -22.14 -3.12 -25.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_13158378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.666 kcal (2) G-P(sol) polarization free energy of solvation -22.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds