Wall clock time and date at job start Tue Mar 9 2021 14:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86297 * 109.46876 * 2 1 4 4 C 1.50699 * 109.47064 * 119.99823 * 2 1 3 5 5 C 1.34713 * 125.66572 * 64.99996 * 4 2 1 6 6 C 1.40972 * 107.02904 * 179.97438 * 5 4 2 7 7 C 1.35930 * 106.74078 * 0.02562 * 6 5 4 8 8 C 1.47814 * 125.92978 * 179.97438 * 7 6 5 9 9 C 1.39806 * 120.00167 * 359.97438 * 8 7 6 10 10 C 1.37810 * 120.25007 * 180.02562 * 9 8 7 11 11 C 1.38779 * 120.24076 * 359.71582 * 10 9 8 12 12 O 1.35646 * 120.00025 * 180.27804 * 11 10 9 13 13 C 1.40247 * 119.99391 * 0.55545 * 11 10 9 14 14 C 1.47564 * 120.11725 * 179.71659 * 13 11 10 15 15 O 1.21588 * 120.00255 * 359.73000 * 14 13 11 16 16 N 1.34784 * 119.99887 * 179.72949 * 14 13 11 17 17 C 1.46493 * 119.99864 * 179.72978 * 16 14 13 18 18 H 1.08999 * 109.47597 * 34.99540 * 17 16 14 19 19 C 1.52996 * 109.47222 * 155.00033 * 17 16 14 20 20 C 1.52997 * 109.47357 * 59.99623 * 19 17 16 21 21 C 1.52997 * 109.47326 * 60.00165 * 20 19 17 22 22 H 1.09003 * 109.47006 * 59.99980 * 21 20 19 23 23 C 1.52997 * 109.47656 * 180.02562 * 21 20 19 24 24 O 1.42901 * 109.47484 * 185.00234 * 23 21 20 25 25 C 1.53001 * 109.47203 * 300.00436 * 21 20 19 26 26 C 1.53000 * 109.47099 * 274.99655 * 17 16 14 27 27 C 1.39213 * 120.00551 * 179.97438 * 8 7 6 28 28 O 1.34340 * 125.66850 * 245.26968 * 4 2 1 29 29 H 0.96706 * 114.00459 * 299.99792 * 1 2 3 30 30 H 1.08992 * 109.47256 * 239.99685 * 2 1 3 31 31 H 1.48501 * 110.00234 * 299.99945 * 3 2 1 32 32 H 1.48497 * 110.00103 * 61.31793 * 3 2 1 33 33 H 1.07997 * 126.48239 * 359.97438 * 5 4 2 34 34 H 1.08000 * 126.62455 * 179.97438 * 6 5 4 35 35 H 1.08004 * 119.87454 * 359.97438 * 9 8 7 36 36 H 1.08002 * 119.87998 * 179.97438 * 10 9 8 37 37 H 0.96706 * 114.00269 * 270.28115 * 12 11 10 38 38 H 0.97000 * 119.99339 * 0.02562 * 16 14 13 39 39 H 1.08999 * 109.47829 * 179.97438 * 19 17 16 40 40 H 1.09003 * 109.47300 * 299.99847 * 19 17 16 41 41 H 1.09004 * 109.47628 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.47095 * 300.00199 * 20 19 17 43 43 H 1.09002 * 109.46940 * 304.99629 * 23 21 20 44 44 H 1.08996 * 109.47131 * 64.99790 * 23 21 20 45 45 H 0.96696 * 114.00070 * 179.97438 * 24 23 21 46 46 H 1.09003 * 109.47735 * 179.97438 * 25 21 20 47 47 H 1.09007 * 109.47181 * 299.99898 * 25 21 20 48 48 H 1.09008 * 109.47230 * 60.00254 * 26 17 16 49 49 H 1.09003 * 109.47308 * 180.02562 * 26 17 16 50 50 H 1.08006 * 120.11864 * 0.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7570 -2.0167 1.5094 6 6 2.3823 -2.2612 2.7490 7 6 2.9084 -1.0779 3.1622 8 6 3.6587 -0.8529 4.4158 9 6 3.8797 -1.9144 5.2984 10 6 4.5781 -1.7103 6.4687 11 6 5.0723 -0.4507 6.7771 12 8 5.7639 -0.2565 7.9278 13 6 4.8516 0.6226 5.9018 14 6 5.3705 1.9645 6.2301 15 8 5.9864 2.1422 7.2632 16 7 5.1617 2.9932 5.3845 17 6 5.6717 4.3265 5.7132 18 1 6.6231 4.2328 6.2368 19 6 5.8752 5.1266 4.4251 20 6 4.5397 5.2582 3.6901 21 6 3.5334 5.9824 4.5866 22 1 3.9129 6.9745 4.8312 23 6 2.1978 6.1135 3.8520 24 8 1.2944 6.8905 4.6408 25 6 3.3300 5.1824 5.8749 26 6 4.6655 5.0507 6.6097 27 6 4.1453 0.4160 4.7177 28 8 2.6229 -0.1450 2.2339 29 1 -0.3934 0.4417 0.7651 30 1 1.7923 -0.5138 -0.8899 31 1 1.5614 2.4679 -1.2085 32 1 1.5877 2.4585 1.2242 33 1 1.2367 -2.7398 0.8989 34 1 2.4327 -3.2059 3.2700 35 1 3.5009 -2.8980 5.0624 36 1 4.7450 -2.5345 7.1464 37 1 5.2110 -0.0118 8.6825 38 1 4.6701 2.8514 4.5605 39 1 6.2542 6.1189 4.6695 40 1 6.5921 4.6107 3.7863 41 1 4.6847 5.8278 2.7721 42 1 4.1603 4.2661 3.4456 43 1 2.3576 6.6053 2.8925 44 1 1.7754 5.1224 3.6864 45 1 0.4254 7.0151 4.2354 46 1 2.6133 5.6985 6.5138 47 1 2.9505 4.1902 5.6303 48 1 4.5205 4.4808 7.5276 49 1 5.0447 6.0431 6.8540 50 1 3.9754 1.2376 4.0375 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_13259648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:57:17 Heat of formation + Delta-G solvation = -120.166899 kcal Electronic energy + Delta-G solvation = -35189.513100 eV Core-core repulsion = 30535.847225 eV Total energy + Delta-G solvation = -4653.665875 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.165 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.69709 -41.77482 -40.51110 -39.13834 -38.20870 -37.84512 -37.44372 -34.90538 -34.19126 -32.93749 -32.63345 -31.83425 -31.05854 -30.02826 -26.56880 -26.38888 -25.26892 -23.72426 -23.59928 -23.02335 -22.24233 -21.90246 -21.24579 -20.22057 -19.71474 -19.18830 -18.44422 -18.24857 -17.67350 -17.46590 -17.14110 -16.71044 -16.62598 -16.41636 -16.21615 -15.93164 -15.79597 -15.75231 -15.36014 -14.99352 -14.80520 -14.57652 -14.44606 -14.34615 -13.96302 -13.94562 -13.78942 -13.61628 -13.42295 -13.24546 -13.19735 -13.11115 -13.04275 -12.88056 -12.47483 -12.17191 -12.11843 -11.87858 -11.59601 -11.34322 -11.14670 -11.06427 -10.90105 -10.86240 -10.78493 -10.47962 -10.31508 -10.04016 -8.90875 -4.95140 -0.56099 -0.21252 0.77132 1.16132 1.47452 1.49698 1.71073 1.88699 1.92323 2.05608 2.62880 3.10999 3.21546 3.25732 3.30774 3.49164 3.62729 3.65190 3.71316 3.88016 3.90294 4.01652 4.02200 4.06906 4.20658 4.25147 4.34267 4.37393 4.40094 4.43736 4.46166 4.48195 4.61984 4.63877 4.65902 4.70071 4.73185 4.79992 4.88597 4.98516 5.01005 5.03973 5.07557 5.12932 5.14865 5.19561 5.20988 5.36917 5.40021 5.44556 5.49671 5.50818 5.98384 6.34572 6.43258 6.71332 6.83048 7.14072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.041 4.041 3 Si 0.767 3.233 4 C -0.053 4.053 5 C -0.181 4.181 6 C -0.190 4.190 7 C 0.024 3.976 8 C -0.040 4.040 9 C -0.045 4.045 10 C -0.147 4.147 11 C 0.163 3.837 12 O -0.494 6.494 13 C -0.179 4.179 14 C 0.556 3.444 15 O -0.559 6.559 16 N -0.708 5.708 17 C 0.147 3.853 18 H 0.073 0.927 19 C -0.120 4.120 20 C -0.113 4.113 21 C -0.087 4.087 22 H 0.073 0.927 23 C 0.075 3.925 24 O -0.595 6.595 25 C -0.101 4.101 26 C -0.127 4.127 27 C -0.052 4.052 28 O -0.172 6.172 29 H 0.389 0.611 30 H 0.151 0.849 31 H -0.285 1.285 32 H -0.279 1.279 33 H 0.161 0.839 34 H 0.174 0.826 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.409 0.591 38 H 0.407 0.593 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.046 0.954 45 H 0.394 0.606 46 H 0.052 0.948 47 H 0.056 0.944 48 H 0.045 0.955 49 H 0.077 0.923 50 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.899 -1.705 -4.937 5.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.150 4.150 3 Si 0.670 3.330 4 C -0.103 4.103 5 C -0.201 4.201 6 C -0.208 4.208 7 C -0.026 4.026 8 C -0.041 4.041 9 C -0.064 4.064 10 C -0.165 4.165 11 C 0.116 3.884 12 O -0.308 6.308 13 C -0.183 4.183 14 C 0.344 3.656 15 O -0.438 6.438 16 N -0.361 5.361 17 C 0.043 3.957 18 H 0.091 0.909 19 C -0.158 4.158 20 C -0.150 4.150 21 C -0.105 4.105 22 H 0.091 0.909 23 C -0.002 4.002 24 O -0.403 6.403 25 C -0.139 4.139 26 C -0.165 4.165 27 C -0.071 4.071 28 O -0.070 6.070 29 H 0.239 0.761 30 H 0.169 0.831 31 H -0.211 1.211 32 H -0.205 1.205 33 H 0.179 0.821 34 H 0.191 0.809 35 H 0.183 0.817 36 H 0.181 0.819 37 H 0.270 0.730 38 H 0.245 0.755 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.243 0.757 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.064 0.936 49 H 0.096 0.904 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.508 -0.836 -4.670 4.772 hybrid contribution -2.276 -0.280 0.406 2.329 sum -2.784 -1.116 -4.264 5.213 Atomic orbital electron populations 1.86646 1.17388 1.80480 1.49974 1.24572 0.83499 1.12829 0.94049 0.93693 0.90312 0.71487 0.77526 1.23048 1.01069 0.93997 0.92183 1.21798 1.03936 0.96018 0.98299 1.22154 1.02076 0.99085 0.97523 1.20403 1.03504 0.87717 0.90945 1.17691 1.00329 0.94415 0.91618 1.21419 0.94549 0.99218 0.91164 1.21582 0.98782 0.96962 0.99144 1.18898 0.89829 0.91768 0.87906 1.84708 1.36311 1.91156 1.18615 1.20296 1.05512 0.93814 0.98638 1.18271 0.79235 0.84610 0.83497 1.90803 1.41770 1.84901 1.26332 1.45981 1.57590 1.08469 1.24107 1.20970 0.96774 0.81073 0.96919 0.90904 1.21794 0.98070 1.01098 0.94811 1.21542 0.93887 1.01000 0.98580 1.21177 0.94168 0.99942 0.95260 0.90851 1.22321 0.89935 0.94386 0.93576 1.86443 1.28558 1.75170 1.50150 1.21390 0.96418 0.99588 0.96491 1.21874 0.95958 1.00713 0.97968 1.21374 0.93880 0.97256 0.94560 1.83900 1.58276 1.38098 1.26705 0.76089 0.83146 1.21136 1.20502 0.82108 0.80892 0.81697 0.81890 0.73010 0.75469 0.89273 0.89711 0.89373 0.91233 0.92341 0.93531 0.75671 0.92923 0.92520 0.93581 0.90402 0.83595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.52 12.88 -148.98 -1.92 -1.40 16 2 C -0.04 0.15 2.98 71.24 0.21 0.36 16 3 Si 0.77 -3.59 32.11 68.60 2.20 -1.39 16 4 C -0.05 0.07 6.20 24.88 0.15 0.22 16 5 C -0.18 0.19 10.78 22.13 0.24 0.43 16 6 C -0.19 0.37 10.26 22.40 0.23 0.60 16 7 C 0.02 -0.01 7.03 24.27 0.17 0.16 16 8 C -0.04 0.05 5.87 -20.13 -0.12 -0.07 16 9 C -0.05 0.17 9.54 22.55 0.22 0.39 16 10 C -0.15 0.29 9.96 22.30 0.22 0.51 16 11 C 0.16 0.56 6.72 22.89 0.15 0.71 16 12 O -0.49 -2.89 11.55 -68.62 -0.79 -3.68 16 13 C -0.18 -0.64 5.88 -20.04 -0.12 -0.76 16 14 C 0.56 3.82 7.73 86.70 0.67 4.49 16 15 O -0.56 -8.05 14.80 16.99 0.25 -7.80 16 16 N -0.71 -0.59 4.18 -445.68 -1.86 -2.46 16 17 C 0.15 0.13 2.79 44.99 0.13 0.25 16 18 H 0.07 0.38 7.57 -2.39 -0.02 0.36 16 19 C -0.12 0.56 5.61 30.59 0.17 0.73 16 20 C -0.11 0.68 5.03 30.59 0.15 0.83 16 21 C -0.09 0.16 2.43 -10.80 -0.03 0.13 16 22 H 0.07 0.00 8.14 -2.39 -0.02 -0.01 16 23 C 0.08 -0.16 6.43 71.98 0.46 0.31 16 24 O -0.60 -0.81 13.19 -148.98 -1.97 -2.77 16 25 C -0.10 -0.14 4.94 30.60 0.15 0.01 16 26 C -0.13 -0.31 5.60 30.59 0.17 -0.14 16 27 C -0.05 0.02 9.20 22.79 0.21 0.23 16 28 O -0.17 0.05 8.80 -6.49 -0.06 -0.01 16 29 H 0.39 -2.39 8.70 -74.05 -0.64 -3.03 16 30 H 0.15 -1.01 7.96 -2.39 -0.02 -1.03 16 31 H -0.28 -0.40 7.11 99.48 0.71 0.31 16 32 H -0.28 0.17 7.11 99.48 0.71 0.88 16 33 H 0.16 -0.49 8.06 -2.91 -0.02 -0.51 16 34 H 0.17 -1.17 7.24 -2.91 -0.02 -1.19 16 35 H 0.17 -1.54 6.96 -2.91 -0.02 -1.56 16 36 H 0.16 -0.98 8.06 -2.91 -0.02 -1.01 16 37 H 0.41 -0.42 9.06 -74.05 -0.67 -1.09 16 38 H 0.41 -1.55 4.89 -92.71 -0.45 -2.00 16 39 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 40 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 42 H 0.07 -0.53 6.50 -2.39 -0.02 -0.55 16 43 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 44 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 45 H 0.39 -2.58 9.12 -74.06 -0.68 -3.25 16 46 H 0.05 0.27 7.82 -2.39 -0.02 0.26 16 47 H 0.06 0.08 7.60 -2.38 -0.02 0.07 16 48 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 49 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 50 H 0.15 -0.61 6.24 -2.91 -0.02 -0.63 16 Total: 0.00 -23.84 407.63 -2.07 -25.91 By element: Atomic # 1 Polarization: -14.42 SS G_CDS: -1.38 Total: -15.80 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 3.45 Total: 9.39 kcal Atomic # 7 Polarization: -0.59 SS G_CDS: -1.86 Total: -2.46 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -4.48 Total: -15.66 kcal Atomic # 14 Polarization: -3.59 SS G_CDS: 2.20 Total: -1.39 kcal Total: -23.84 -2.07 -25.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_13259648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.252 kcal (2) G-P(sol) polarization free energy of solvation -23.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds