Wall clock time and date at job start Tue Mar 9 2021 14:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86293 * 109.47567 * 2 1 4 4 C 1.50698 * 109.46992 * 120.00184 * 2 1 3 5 5 C 1.34184 * 126.54123 * 254.68294 * 4 2 1 6 6 N 1.36870 * 109.97062 * 180.26485 * 5 4 2 7 7 C 1.37400 * 109.97916 * 0.02562 * 6 5 4 8 8 C 1.39333 * 133.25683 * 180.02562 * 7 6 5 9 9 C 1.36348 * 120.23581 * 179.97438 * 8 7 6 10 10 C 1.40164 * 120.67692 * 359.97438 * 9 8 7 11 11 C 1.47647 * 119.97867 * 179.97438 * 10 9 8 12 12 O 1.21583 * 120.00101 * 179.97438 * 11 10 9 13 13 N 1.34774 * 120.00011 * 359.97438 * 11 10 9 14 14 C 1.46501 * 120.00258 * 179.97438 * 13 11 10 15 15 H 1.09003 * 109.47201 * 325.00093 * 14 13 11 16 16 C 1.52999 * 109.47050 * 85.00271 * 14 13 11 17 17 C 1.53002 * 109.47016 * 59.99775 * 16 14 13 18 18 C 1.52998 * 109.47024 * 60.00571 * 17 16 14 19 19 H 1.08996 * 109.47345 * 60.00039 * 18 17 16 20 20 C 1.53002 * 109.47024 * 180.02562 * 18 17 16 21 21 O 1.42906 * 109.46696 * 294.99570 * 20 18 17 22 22 C 1.52999 * 109.46758 * 299.99587 * 18 17 16 23 23 C 1.52994 * 109.47239 * 60.00329 * 22 18 17 24 24 C 1.39188 * 120.04836 * 359.97438 * 10 9 8 25 25 C 1.39231 * 119.39304 * 0.02562 * 24 10 9 26 26 H 0.96700 * 113.99757 * 60.00045 * 1 2 3 27 27 H 1.09005 * 109.47097 * 239.99901 * 2 1 3 28 28 H 1.48505 * 109.99870 * 60.00060 * 3 2 1 29 29 H 1.48494 * 110.00491 * 181.31952 * 3 2 1 30 30 H 1.08000 * 125.01956 * 0.26004 * 5 4 2 31 31 H 0.96999 * 125.00905 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.87887 * 359.96586 * 8 7 6 33 33 H 1.08006 * 119.65804 * 180.02562 * 9 8 7 34 34 H 0.97002 * 120.00321 * 359.97438 * 13 11 10 35 35 H 1.08996 * 109.47561 * 179.97438 * 16 14 13 36 36 H 1.09005 * 109.46752 * 300.00481 * 16 14 13 37 37 H 1.08996 * 109.47334 * 299.99962 * 17 16 14 38 38 H 1.09003 * 109.46627 * 180.02562 * 17 16 14 39 39 H 1.08991 * 109.47457 * 54.99231 * 20 18 17 40 40 H 1.08994 * 109.46986 * 175.00222 * 20 18 17 41 41 H 0.96702 * 113.99752 * 180.02562 * 21 20 18 42 42 H 1.09003 * 109.47076 * 299.99870 * 22 18 17 43 43 H 1.09009 * 109.46851 * 180.02562 * 22 18 17 44 44 H 1.09000 * 109.47340 * 179.97438 * 23 22 18 45 45 H 1.09003 * 109.47461 * 59.99777 * 23 22 18 46 46 H 1.08004 * 120.30585 * 180.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7563 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.4661 -0.1392 2.3205 6 7 2.8115 -1.1012 3.2306 7 6 2.5014 -2.3460 2.7385 8 6 2.6412 -3.6358 3.2469 9 6 2.2333 -4.7107 2.5139 10 6 1.6686 -4.5368 1.2429 11 6 1.2327 -5.7117 0.4623 12 8 0.7424 -5.5613 -0.6401 13 7 1.3783 -6.9510 0.9716 14 6 0.9453 -8.1168 0.1973 15 1 0.0537 -7.8617 -0.3756 16 6 2.0629 -8.5376 -0.7591 17 6 3.3144 -8.8956 0.0451 18 6 2.9960 -10.0504 0.9968 19 1 2.6739 -10.9178 0.4207 20 6 4.2472 -10.4080 1.8014 21 8 5.2529 -10.9112 0.9195 22 6 1.8783 -9.6296 1.9532 23 6 0.6269 -9.2716 1.1491 24 6 1.5185 -3.2572 0.7161 25 6 1.9342 -2.1578 1.4625 26 1 -0.3933 0.4417 -0.7651 27 1 1.7923 -0.5139 -0.8900 28 1 1.5616 2.4678 1.2086 29 1 3.5346 1.7702 -0.0321 30 1 2.6037 0.9230 2.4592 31 1 3.2163 -0.9296 4.0953 32 1 3.0744 -3.7845 4.2250 33 1 2.3458 -5.7063 2.9173 34 1 1.7698 -7.0711 1.8510 35 1 1.7410 -9.4052 -1.3349 36 1 2.2898 -7.7148 -1.4371 37 1 3.6366 -8.0282 0.6211 38 1 4.1107 -9.1949 -0.6364 39 1 4.6204 -9.5178 2.3076 40 1 3.9985 -11.1691 2.5408 41 1 6.0760 -11.1590 1.3623 42 1 2.2005 -8.7622 2.5293 43 1 1.6517 -10.4522 2.6316 44 1 -0.1695 -8.9723 1.8305 45 1 0.3047 -10.1390 0.5729 46 1 1.0836 -3.1184 -0.2627 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_13287722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:57:21 Heat of formation + Delta-G solvation = -68.053844 kcal Electronic energy + Delta-G solvation = -28473.765579 eV Core-core repulsion = 24522.524110 eV Total energy + Delta-G solvation = -3951.241470 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.58320 -41.38227 -39.62273 -37.93680 -37.56194 -37.35189 -34.85341 -33.47019 -32.05298 -31.77547 -30.83900 -30.24558 -26.52189 -26.45245 -24.90331 -23.68343 -23.56932 -22.21974 -21.85098 -20.70995 -20.19364 -19.18498 -18.68477 -18.34503 -18.18619 -17.46924 -17.02271 -16.58914 -16.17576 -15.96478 -15.74163 -15.57035 -15.29547 -15.11215 -14.99583 -14.97373 -14.84612 -14.61404 -14.23365 -13.96311 -13.81403 -13.60799 -13.48089 -13.19746 -13.01752 -12.77290 -12.65795 -12.42740 -12.13697 -12.08326 -11.93119 -11.56298 -11.31640 -11.12107 -11.06643 -10.91350 -10.80052 -10.21109 -10.13781 -9.44753 -8.94016 -4.93155 -0.23388 0.09163 1.32362 1.33567 1.70850 1.80942 1.92867 1.96595 2.10904 2.81305 3.31718 3.47024 3.57375 3.64702 3.65405 3.72202 3.76529 3.90567 3.98315 4.05378 4.06977 4.17999 4.28002 4.32178 4.40242 4.43178 4.44283 4.48516 4.49478 4.50881 4.67138 4.70730 4.75223 4.76703 4.91769 5.01361 5.05340 5.10391 5.14928 5.17432 5.23173 5.26264 5.35812 5.40261 5.44071 5.45627 5.52915 5.86241 6.41462 6.50019 6.91016 6.93964 7.17976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.570 6.570 2 C -0.060 4.060 3 Si 0.791 3.209 4 C -0.180 4.180 5 C 0.058 3.942 6 N -0.573 5.573 7 C 0.110 3.890 8 C -0.125 4.125 9 C -0.063 4.063 10 C -0.177 4.177 11 C 0.561 3.439 12 O -0.585 6.585 13 N -0.702 5.702 14 C 0.146 3.854 15 H 0.069 0.931 16 C -0.128 4.128 17 C -0.101 4.101 18 C -0.087 4.087 19 H 0.069 0.931 20 C 0.076 3.924 21 O -0.598 6.598 22 C -0.110 4.110 23 C -0.120 4.120 24 C -0.016 4.016 25 C -0.130 4.130 26 H 0.399 0.601 27 H 0.069 0.931 28 H -0.280 1.280 29 H -0.287 1.287 30 H 0.188 0.812 31 H 0.438 0.562 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.411 0.589 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.395 0.605 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.978 0.738 6.410 7.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.379 6.379 2 C -0.169 4.169 3 Si 0.694 3.306 4 C -0.187 4.187 5 C -0.070 4.070 6 N -0.177 5.177 7 C 0.001 3.999 8 C -0.145 4.145 9 C -0.083 4.083 10 C -0.181 4.181 11 C 0.350 3.650 12 O -0.467 6.467 13 N -0.356 5.356 14 C 0.041 3.959 15 H 0.087 0.913 16 C -0.167 4.167 17 C -0.139 4.139 18 C -0.105 4.105 19 H 0.087 0.913 20 C -0.001 4.001 21 O -0.406 6.406 22 C -0.147 4.147 23 C -0.157 4.157 24 C -0.035 4.035 25 C -0.135 4.135 26 H 0.249 0.751 27 H 0.087 0.913 28 H -0.206 1.206 29 H -0.213 1.213 30 H 0.205 0.795 31 H 0.279 0.721 32 H 0.182 0.818 33 H 0.180 0.820 34 H 0.250 0.750 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.244 0.756 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.788 1.248 6.301 7.002 hybrid contribution 0.746 -0.503 0.788 1.196 sum 3.534 0.744 7.089 7.956 Atomic orbital electron populations 1.86476 1.18001 1.82554 1.50853 1.24441 0.85253 1.11663 0.95550 0.93730 0.77274 0.73920 0.85713 1.20109 1.09194 0.91534 0.97863 1.21876 1.00907 0.94990 0.89182 1.41678 1.53993 1.03317 1.18678 1.18710 0.99759 0.87742 0.93724 1.20069 1.04542 0.87638 1.02263 1.20899 0.95577 1.00110 0.91669 1.19635 1.08631 0.92347 0.97533 1.18405 0.77409 0.83993 0.85164 1.90757 1.46710 1.86795 1.22428 1.45868 1.63375 1.04593 1.21729 1.20968 0.96695 0.85168 0.93027 0.91308 1.21882 0.96093 1.00842 0.97890 1.21393 0.96545 0.97869 0.98088 1.21172 0.94450 0.98084 0.96837 0.91262 1.22325 0.88198 0.97999 0.91619 1.86449 1.28314 1.86483 1.39399 1.21519 0.93395 1.02474 0.97338 1.21788 0.98570 0.97035 0.98355 1.20603 0.94046 0.90404 0.98495 1.19183 1.05409 0.93197 0.95677 0.75091 0.91306 1.20633 1.21346 0.79508 0.72115 0.81846 0.82013 0.74980 0.90534 0.93988 0.92057 0.93019 0.92683 0.92338 0.75588 0.90655 0.89549 0.89863 0.89501 0.86720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -2.77 12.86 -148.98 -1.92 -4.69 16 2 C -0.06 -0.22 3.05 71.24 0.22 0.00 16 3 Si 0.79 -1.70 30.79 68.60 2.11 0.41 16 4 C -0.18 -1.38 5.62 -18.61 -0.10 -1.49 16 5 C 0.06 0.17 10.43 82.98 0.87 1.03 16 6 N -0.57 0.06 6.05 -187.48 -1.13 -1.07 16 7 C 0.11 0.45 7.27 39.19 0.28 0.74 16 8 C -0.12 0.11 10.00 22.09 0.22 0.33 16 9 C -0.06 0.01 9.46 22.30 0.21 0.22 16 10 C -0.18 -1.36 5.87 -20.10 -0.12 -1.48 16 11 C 0.56 5.56 7.73 86.73 0.67 6.23 16 12 O -0.59 -11.04 15.99 -3.98 -0.06 -11.10 16 13 N -0.70 -1.34 4.18 -445.58 -1.86 -3.20 16 14 C 0.15 0.33 2.78 44.99 0.13 0.45 16 15 H 0.07 0.48 7.58 -2.39 -0.02 0.47 16 16 C -0.13 -0.52 5.60 30.59 0.17 -0.35 16 17 C -0.10 -0.19 4.94 30.59 0.15 -0.04 16 18 C -0.09 0.18 2.43 -10.79 -0.03 0.15 16 19 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 20 C 0.08 -0.24 6.43 71.98 0.46 0.22 16 21 O -0.60 -0.52 13.20 -148.98 -1.97 -2.49 16 22 C -0.11 0.71 5.03 30.59 0.15 0.86 16 23 C -0.12 0.48 5.61 30.59 0.17 0.65 16 24 C -0.02 -0.19 9.64 22.74 0.22 0.03 16 25 C -0.13 -1.28 6.34 -20.21 -0.13 -1.40 16 26 H 0.40 -2.31 8.74 -74.06 -0.65 -2.96 16 27 H 0.07 0.20 7.96 -2.38 -0.02 0.19 16 28 H -0.28 -0.60 7.05 99.48 0.70 0.10 16 29 H -0.29 -0.81 7.11 99.48 0.71 -0.10 16 30 H 0.19 -0.32 6.30 -2.91 -0.02 -0.34 16 31 H 0.44 -3.33 8.96 -92.71 -0.83 -4.16 16 32 H 0.16 -1.34 8.06 -2.91 -0.02 -1.37 16 33 H 0.16 -1.31 6.36 -2.91 -0.02 -1.33 16 34 H 0.41 -1.85 4.87 -92.71 -0.45 -2.30 16 35 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.04 0.41 8.14 -2.38 -0.02 0.39 16 37 H 0.06 0.08 7.60 -2.39 -0.02 0.06 16 38 H 0.05 0.30 7.82 -2.39 -0.02 0.28 16 39 H 0.05 -0.30 8.14 -2.39 -0.02 -0.32 16 40 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 41 H 0.39 -2.89 9.12 -74.06 -0.68 -3.56 16 42 H 0.07 -0.68 6.51 -2.39 -0.02 -0.70 16 43 H 0.09 -0.73 8.14 -2.38 -0.02 -0.75 16 44 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 46 H 0.11 1.73 7.64 -2.91 -0.02 1.71 16 Total: 0.00 -28.86 368.11 -2.81 -31.67 By element: Atomic # 1 Polarization: -14.15 SS G_CDS: -1.52 Total: -15.67 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 3.55 Total: 6.15 kcal Atomic # 7 Polarization: -1.28 SS G_CDS: -3.00 Total: -4.28 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -3.94 Total: -18.28 kcal Atomic # 14 Polarization: -1.70 SS G_CDS: 2.11 Total: 0.41 kcal Total: -28.86 -2.81 -31.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_13287722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.388 kcal (2) G-P(sol) polarization free energy of solvation -28.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds