Wall clock time and date at job start Tue Mar 9 2021 14:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86301 * 109.46857 * 2 1 4 4 C 1.50703 * 109.46822 * 240.00170 * 2 1 3 5 5 C 1.33749 * 125.12017 * 300.02312 * 4 2 1 6 6 C 1.37799 * 115.07916 * 179.73028 * 5 4 2 7 7 C 1.34980 * 114.70067 * 0.50144 * 6 5 4 8 8 C 1.47557 * 125.27562 * 179.79484 * 7 6 5 9 9 C 1.39822 * 120.00160 * 179.72124 * 8 7 6 10 10 C 1.36565 * 120.00394 * 179.97438 * 9 8 7 11 11 C 1.39834 * 119.99475 * 0.02562 * 10 9 8 12 12 C 1.47556 * 119.99870 * 180.02562 * 11 10 9 13 13 O 1.21603 * 120.00139 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00195 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99949 * 180.02562 * 14 12 11 16 16 H 1.09000 * 109.47020 * 324.99485 * 15 14 12 17 17 C 1.52999 * 109.47075 * 84.99839 * 15 14 12 18 18 C 1.52997 * 109.47317 * 59.99940 * 17 15 14 19 19 C 1.53000 * 109.47060 * 59.99960 * 18 17 15 20 20 H 1.08992 * 109.47399 * 59.99823 * 19 18 17 21 21 C 1.53001 * 109.46886 * 180.02562 * 19 18 17 22 22 O 1.42897 * 109.47209 * 185.00085 * 21 19 18 23 23 C 1.53002 * 109.47233 * 299.99657 * 19 18 17 24 24 C 1.52997 * 109.46817 * 60.00194 * 23 19 18 25 25 C 1.39824 * 120.00061 * 0.27884 * 11 10 9 26 26 C 1.36566 * 120.00020 * 359.39524 * 25 11 10 27 27 S 1.75859 * 125.11718 * 120.02185 * 4 2 1 28 28 H 0.96694 * 114.00422 * 59.99932 * 1 2 3 29 29 H 1.09004 * 109.47201 * 120.00474 * 2 1 3 30 30 H 1.48496 * 109.99954 * 60.00785 * 3 2 1 31 31 H 1.48507 * 109.99432 * 181.32341 * 3 2 1 32 32 H 1.07998 * 122.45412 * 359.97438 * 5 4 2 33 33 H 1.07997 * 122.64702 * 180.29640 * 6 5 4 34 34 H 1.07999 * 119.99516 * 359.97438 * 9 8 7 35 35 H 1.07992 * 120.00252 * 180.02562 * 10 9 8 36 36 H 0.97000 * 120.00195 * 359.97438 * 14 12 11 37 37 H 1.08996 * 109.46929 * 299.99044 * 17 15 14 38 38 H 1.09002 * 109.46716 * 179.97438 * 17 15 14 39 39 H 1.09002 * 109.47153 * 299.99641 * 18 17 15 40 40 H 1.09001 * 109.46832 * 179.97438 * 18 17 15 41 41 H 1.09008 * 109.46864 * 304.99696 * 21 19 18 42 42 H 1.09000 * 109.47679 * 64.99728 * 21 19 18 43 43 H 0.96701 * 114.00545 * 179.97438 * 22 21 19 44 44 H 1.08993 * 109.47662 * 180.02562 * 23 19 18 45 45 H 1.09002 * 109.47075 * 300.00932 * 23 19 18 46 46 H 1.09002 * 109.47153 * 60.00231 * 24 23 19 47 47 H 1.09001 * 109.47289 * 180.02562 * 24 23 19 48 48 H 1.08004 * 120.00522 * 179.72347 * 25 11 10 49 49 H 1.07997 * 120.00574 * 180.32050 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6716 -1.9846 -1.5432 6 6 2.2324 -2.4224 -2.7234 7 6 2.9671 -1.4971 -3.3761 8 6 3.6724 -1.7152 -4.6537 9 6 4.3997 -0.6735 -5.2375 10 6 5.0529 -0.8755 -6.4197 11 6 4.9940 -2.1241 -7.0465 12 6 5.7003 -2.3426 -8.3235 13 8 6.3331 -1.4368 -8.8310 14 7 5.6431 -3.5459 -8.9279 15 6 6.3448 -3.7630 -10.1955 16 1 6.3122 -2.8498 -10.7898 17 6 7.8015 -4.1370 -9.9145 18 6 7.8472 -5.4187 -9.0803 19 6 7.1690 -6.5532 -9.8509 20 1 7.6910 -6.7147 -10.7940 21 6 7.2142 -7.8348 -9.0164 22 8 6.6861 -8.9201 -9.7813 23 6 5.7122 -6.1793 -10.1318 24 6 5.6665 -4.8976 -10.9660 25 6 4.2615 -3.1640 -6.4658 26 6 3.6138 -2.9639 -5.2803 27 16 2.9470 0.0113 -2.4715 28 1 -0.3934 0.4417 -0.7650 29 1 1.7924 -0.5139 0.8900 30 1 1.5616 2.4678 1.2086 31 1 3.5346 1.7702 -0.0322 32 1 1.0637 -2.6223 -0.9186 33 1 2.0976 -3.4274 -3.0949 34 1 4.4448 0.2909 -4.7536 35 1 5.6149 -0.0710 -6.8704 36 1 5.1380 -4.2684 -8.5233 37 1 8.2847 -3.3287 -9.3657 38 1 8.3234 -4.2989 -10.8576 39 1 7.3252 -5.2572 -8.1371 40 1 8.8851 -5.6853 -8.8805 41 1 8.2461 -8.0527 -8.7408 42 1 6.6174 -7.7020 -8.1139 43 1 6.6842 -9.7666 -9.3137 44 1 5.2288 -6.9876 -10.6804 45 1 5.1902 -6.0177 -9.1887 46 1 6.1885 -5.0591 -11.9092 47 1 4.6287 -4.6309 -11.1658 48 1 4.2123 -4.1271 -6.9521 49 1 3.0522 -3.7686 -4.8291 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_7207534_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:57:40 Heat of formation + Delta-G solvation = -68.144937 kcal Electronic energy + Delta-G solvation = -30678.630825 eV Core-core repulsion = 26469.973663 eV Total energy + Delta-G solvation = -4208.657162 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.138 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.61305 -40.43785 -39.47042 -38.89582 -37.53759 -37.36677 -34.89676 -33.58396 -32.43318 -31.88935 -31.47608 -30.31628 -27.36791 -26.38496 -24.78341 -24.02118 -23.73763 -23.48880 -22.28731 -21.85564 -20.30052 -20.20926 -19.33809 -18.67256 -18.29274 -17.66910 -17.00377 -16.78462 -16.55581 -16.29917 -16.24630 -16.09529 -15.98089 -15.60204 -15.56995 -15.07348 -14.92878 -14.86101 -14.55699 -14.41939 -14.26907 -14.03257 -13.93595 -13.65415 -13.42278 -13.29768 -13.24600 -13.13795 -13.05299 -12.60120 -12.59515 -12.25297 -12.22655 -12.12718 -11.61845 -11.60353 -11.38423 -11.17108 -10.95576 -10.89400 -10.82056 -10.56530 -10.23618 -10.04260 -9.59482 -9.06099 -5.21041 -0.90899 0.23598 0.30114 0.34038 0.71263 1.17008 1.50819 1.58157 1.84584 2.02096 2.12732 2.83747 3.13556 3.29825 3.38713 3.56100 3.60244 3.62658 3.66406 3.73261 3.77248 3.82573 4.04754 4.13161 4.16112 4.24237 4.28676 4.30005 4.31577 4.39506 4.40409 4.42143 4.48838 4.56574 4.58726 4.62990 4.68662 4.84765 4.90470 4.93744 5.01481 5.03799 5.06148 5.08567 5.14888 5.20081 5.23413 5.27302 5.32787 5.35483 5.41898 5.51876 5.69399 6.41192 6.48091 6.61062 7.22314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.026 4.026 3 Si 0.652 3.348 4 C -0.219 4.219 5 C -0.103 4.103 6 C -0.120 4.120 7 C -0.147 4.147 8 C 0.012 3.988 9 C -0.120 4.120 10 C -0.049 4.049 11 C -0.135 4.135 12 C 0.559 3.441 13 O -0.534 6.534 14 N -0.719 5.719 15 C 0.145 3.855 16 H 0.092 0.908 17 C -0.130 4.130 18 C -0.112 4.112 19 C -0.089 4.089 20 H 0.081 0.919 21 C 0.079 3.921 22 O -0.573 6.573 23 C -0.111 4.111 24 C -0.129 4.129 25 C -0.079 4.079 26 C -0.109 4.109 27 S 0.132 5.868 28 H 0.381 0.619 29 H 0.124 0.876 30 H -0.232 1.232 31 H -0.237 1.237 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.131 0.869 35 H 0.142 0.858 36 H 0.398 0.602 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.380 0.620 44 H 0.076 0.924 45 H 0.055 0.945 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.128 0.872 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.682 -2.801 0.390 3.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.340 6.340 2 C -0.139 4.139 3 Si 0.551 3.449 4 C -0.337 4.337 5 C -0.134 4.134 6 C -0.150 4.150 7 C -0.264 4.264 8 C 0.010 3.990 9 C -0.138 4.138 10 C -0.068 4.068 11 C -0.139 4.139 12 C 0.346 3.654 13 O -0.411 6.411 14 N -0.372 5.372 15 C 0.041 3.959 16 H 0.110 0.890 17 C -0.168 4.168 18 C -0.150 4.150 19 C -0.107 4.107 20 H 0.099 0.901 21 C 0.001 3.999 22 O -0.379 6.379 23 C -0.148 4.148 24 C -0.167 4.167 25 C -0.098 4.098 26 C -0.129 4.129 27 S 0.400 5.600 28 H 0.229 0.771 29 H 0.141 0.859 30 H -0.155 1.155 31 H -0.161 1.161 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.148 0.852 35 H 0.159 0.841 36 H 0.235 0.765 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.227 0.773 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.100 0.900 47 H 0.090 0.910 48 H 0.146 0.854 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.087 0.087 0.369 0.389 hybrid contribution -0.708 -2.899 1.068 3.170 sum -0.795 -2.812 1.437 3.257 Atomic orbital electron populations 1.86525 1.16562 1.81678 1.49202 1.24411 0.85207 1.09123 0.95203 0.94998 0.82281 0.77805 0.89821 1.25092 1.07101 0.99114 1.02373 1.20001 1.01161 0.94845 0.97356 1.20386 0.98624 1.00617 0.95404 1.23079 1.05813 0.98067 0.99438 1.18288 0.95361 0.94102 0.91255 1.20978 0.97973 0.98716 0.96172 1.20949 0.96021 0.96279 0.93551 1.20042 1.01886 0.95542 0.96384 1.18212 0.80385 0.82456 0.84316 1.90808 1.42406 1.42443 1.65467 1.46055 1.53353 1.13226 1.24559 1.21000 0.91379 0.99139 0.84382 0.89044 1.21901 0.96223 0.97593 1.01083 1.21487 1.00724 0.94051 0.98722 1.21190 0.96964 0.92809 0.99752 0.90108 1.22235 0.97200 0.87028 0.93457 1.86470 1.86418 1.19984 1.45012 1.21523 0.96031 0.97437 0.99853 1.21867 1.01482 0.94141 0.99220 1.20945 0.95503 0.98147 0.95206 1.20864 1.00286 0.96362 0.95411 1.84155 1.48897 1.12625 1.14360 0.77110 0.85896 1.15537 1.16128 0.83667 0.83776 0.85163 0.84057 0.76519 0.90985 0.90627 0.91833 0.91570 0.93624 0.93760 0.77269 0.90528 0.92593 0.89959 0.90982 0.85411 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.18 12.86 -35.23 -0.45 -0.27 16 2 C -0.03 0.02 2.96 36.01 0.11 0.12 16 3 Si 0.65 -0.69 30.96 -169.99 -5.26 -5.95 16 4 C -0.22 0.05 5.73 -35.88 -0.21 -0.16 16 5 C -0.10 0.02 10.00 -41.32 -0.41 -0.40 16 6 C -0.12 0.05 9.64 -40.90 -0.39 -0.34 16 7 C -0.15 -0.04 6.37 -36.94 -0.24 -0.27 16 8 C 0.01 0.00 5.88 -104.91 -0.62 -0.61 16 9 C -0.12 -0.06 9.54 -39.59 -0.38 -0.43 16 10 C -0.05 -0.06 9.53 -39.59 -0.38 -0.44 16 11 C -0.14 -0.13 5.88 -104.91 -0.62 -0.75 16 12 C 0.56 1.27 7.73 -12.46 -0.10 1.17 16 13 O -0.53 -3.15 15.99 5.28 0.08 -3.07 16 14 N -0.72 0.31 4.18 -54.83 -0.23 0.08 16 15 C 0.15 -0.04 2.78 -67.93 -0.19 -0.23 16 16 H 0.09 0.12 7.58 -51.93 -0.39 -0.27 16 17 C -0.13 0.04 5.60 -26.73 -0.15 -0.11 16 18 C -0.11 0.14 5.05 -26.73 -0.13 0.01 16 19 C -0.09 0.11 2.43 -90.62 -0.22 -0.11 16 20 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 21 C 0.08 -0.11 6.43 37.16 0.24 0.13 16 22 O -0.57 0.12 13.19 -35.23 -0.46 -0.35 16 23 C -0.11 0.18 4.93 -26.73 -0.13 0.05 16 24 C -0.13 0.21 5.61 -26.73 -0.15 0.06 16 25 C -0.08 0.09 9.48 -39.59 -0.38 -0.28 16 26 C -0.11 0.11 9.48 -39.59 -0.38 -0.27 16 27 S 0.13 -0.03 19.46 -107.50 -2.09 -2.12 16 28 H 0.38 -1.53 8.70 45.56 0.40 -1.13 16 29 H 0.12 -0.07 7.96 -51.93 -0.41 -0.48 16 30 H -0.23 -0.36 7.11 56.52 0.40 0.04 16 31 H -0.24 -0.26 7.11 56.52 0.40 0.14 16 32 H 0.15 -0.14 8.06 -52.49 -0.42 -0.56 16 33 H 0.14 -0.34 6.88 -52.49 -0.36 -0.70 16 34 H 0.13 -0.10 7.26 -52.49 -0.38 -0.48 16 35 H 0.14 0.19 7.63 -52.49 -0.40 -0.21 16 36 H 0.40 -1.01 4.88 -40.82 -0.20 -1.20 16 37 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 38 H 0.08 -0.06 8.14 -51.93 -0.42 -0.49 16 39 H 0.06 -0.08 7.60 -51.93 -0.39 -0.48 16 40 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 41 H 0.05 -0.08 8.14 -51.92 -0.42 -0.50 16 42 H 0.04 -0.10 8.14 -51.93 -0.42 -0.52 16 43 H 0.38 -1.55 9.12 45.56 0.42 -1.14 16 44 H 0.08 -0.03 7.82 -51.93 -0.41 -0.44 16 45 H 0.06 -0.14 6.50 -51.93 -0.34 -0.48 16 46 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 47 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 48 H 0.13 -0.49 6.38 -52.48 -0.34 -0.82 16 49 H 0.13 -0.40 6.74 -52.49 -0.35 -0.76 16 LS Contribution 404.15 15.07 6.09 6.09 Total: 0.00 -8.10 404.15 -13.21 -21.30 By element: Atomic # 1 Polarization: -6.69 SS G_CDS: -6.17 Total: -12.86 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -4.71 Total: -2.86 kcal Atomic # 7 Polarization: 0.31 SS G_CDS: -0.23 Total: 0.08 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: -0.83 Total: -3.69 kcal Atomic # 14 Polarization: -0.69 SS G_CDS: -5.26 Total: -5.95 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.09 Total: -2.12 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -8.10 -13.21 -21.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.842 kcal (2) G-P(sol) polarization free energy of solvation -8.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds