Wall clock time and date at job start Tue Mar 9 2021 14:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86298 * 109.47295 * 2 1 4 4 C 1.50698 * 109.47331 * 239.99680 * 2 1 3 5 5 C 1.31115 * 118.54682 * 119.99802 * 4 2 1 6 6 N 1.38927 * 121.84635 * 180.40502 * 5 4 2 7 7 C 1.47027 * 118.88522 * 346.71509 * 6 5 4 8 8 C 1.50703 * 109.81940 * 163.20336 * 7 6 5 9 9 O 1.21282 * 120.00078 * 341.78469 * 8 7 6 10 10 N 1.34773 * 119.99744 * 161.79242 * 8 7 6 11 11 C 1.46502 * 119.99750 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.47372 * 34.99984 * 11 10 8 13 13 C 1.53003 * 109.47049 * 154.99932 * 11 10 8 14 14 C 1.52996 * 109.47451 * 59.99854 * 13 11 10 15 15 C 1.53007 * 109.46925 * 59.99745 * 14 13 11 16 16 H 1.09002 * 109.46743 * 60.00723 * 15 14 13 17 17 C 1.52996 * 109.46925 * 180.02562 * 15 14 13 18 18 O 1.42903 * 109.47140 * 185.00386 * 17 15 14 19 19 C 1.52991 * 109.47397 * 300.00159 * 15 14 13 20 20 C 1.52998 * 109.47264 * 274.99732 * 11 10 8 21 21 C 1.53537 * 107.66105 * 43.66155 * 7 6 5 22 22 C 1.50630 * 118.46961 * 300.08930 * 4 2 1 23 23 H 0.96704 * 113.99597 * 60.00012 * 1 2 3 24 24 H 1.09009 * 109.46949 * 119.99783 * 2 1 3 25 25 H 1.48503 * 110.00074 * 60.00123 * 3 2 1 26 26 H 1.48504 * 110.00065 * 181.31844 * 3 2 1 27 27 H 1.07998 * 119.07771 * 0.43908 * 5 4 2 28 28 H 0.97002 * 120.55253 * 166.73458 * 6 5 4 29 29 H 1.08999 * 109.82114 * 284.11975 * 7 6 5 30 30 H 0.97000 * 120.00428 * 359.97438 * 10 8 7 31 31 H 1.09005 * 109.47045 * 179.97438 * 13 11 10 32 32 H 1.09006 * 109.47138 * 299.99675 * 13 11 10 33 33 H 1.08999 * 109.47496 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.47283 * 300.00566 * 14 13 11 35 35 H 1.08998 * 109.47522 * 305.00170 * 17 15 14 36 36 H 1.09001 * 109.47334 * 65.00692 * 17 15 14 37 37 H 0.96701 * 113.99937 * 180.02562 * 18 17 15 38 38 H 1.08997 * 109.47483 * 179.97438 * 19 15 14 39 39 H 1.08994 * 109.47561 * 300.00319 * 19 15 14 40 40 H 1.08994 * 109.47156 * 59.99972 * 20 11 10 41 41 H 1.09005 * 109.47427 * 180.02562 * 20 11 10 42 42 H 1.09002 * 109.62272 * 58.77362 * 21 7 6 43 43 H 1.09001 * 109.62157 * 179.14540 * 21 7 6 44 44 H 1.08996 * 109.57584 * 39.73121 * 22 4 2 45 45 H 1.09000 * 109.30408 * 280.11028 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.6832 -0.0461 -2.0745 6 7 3.1764 -0.6309 -3.2341 7 6 3.1009 -2.0919 -3.3803 8 6 3.2949 -2.4715 -4.8258 9 8 3.1499 -1.6393 -5.6961 10 7 3.6295 -3.7358 -5.1514 11 6 3.8176 -4.1050 -6.5566 12 1 4.2563 -3.2663 -7.0970 13 6 4.7514 -5.3137 -6.6457 14 6 4.1357 -6.4910 -5.8872 15 6 2.7823 -6.8453 -6.5069 16 1 2.9223 -7.1200 -7.5524 17 6 2.1663 -8.0222 -5.7480 18 8 0.9596 -8.4283 -6.3968 19 6 1.8485 -5.6367 -6.4177 20 6 2.4643 -4.4592 -7.1764 21 6 1.7092 -2.5360 -2.9077 22 6 1.5449 -2.1518 -1.4354 23 1 -0.3933 0.4417 -0.7651 24 1 1.7924 -0.5138 0.8901 25 1 1.5616 2.4679 1.2085 26 1 3.5347 1.7702 -0.0321 27 1 2.9262 0.9846 -1.8621 28 1 3.5644 -0.0844 -3.9354 29 1 3.8679 -2.5649 -2.7671 30 1 3.7457 -4.4013 -4.4554 31 1 4.8910 -5.5886 -7.6913 32 1 5.7156 -5.0613 -6.2042 33 1 4.8007 -7.3523 -5.9511 34 1 3.9956 -6.2164 -4.8417 35 1 2.8698 -8.8547 -5.7353 36 1 1.9442 -7.7186 -4.7249 37 1 0.5137 -9.1718 -5.9686 38 1 0.8846 -5.8889 -6.8596 39 1 1.7086 -5.3620 -5.3723 40 1 1.7991 -3.5982 -7.1128 41 1 2.6043 -4.7344 -8.2218 42 1 0.9442 -2.0382 -3.5035 43 1 1.6130 -3.6162 -3.0170 44 1 0.5063 -2.2972 -1.1384 45 1 2.1850 -2.7871 -0.8232 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_15413834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:58:02 Heat of formation + Delta-G solvation = -111.832217 kcal Electronic energy + Delta-G solvation = -25301.109154 eV Core-core repulsion = 21705.336254 eV Total energy + Delta-G solvation = -3595.772900 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.177 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.66742 -40.22074 -39.13110 -37.54513 -37.23159 -34.88327 -33.15187 -33.13217 -31.82107 -31.35402 -27.62705 -26.24260 -25.30547 -23.79747 -23.63716 -22.29839 -21.91783 -20.22282 -19.41100 -19.12849 -18.19639 -18.07329 -17.13839 -16.83151 -16.45914 -16.18848 -15.91634 -15.83428 -15.68655 -15.29672 -15.17520 -14.91265 -14.69706 -14.42123 -14.13071 -13.91006 -13.89455 -13.44008 -13.19007 -13.10627 -13.02992 -12.89698 -12.43208 -12.18665 -12.13291 -11.89659 -11.80118 -11.55893 -11.31724 -11.28681 -11.10229 -10.85531 -10.80024 -10.19279 -10.10993 -8.43830 -4.98073 1.34013 1.41957 1.49790 1.62007 1.92543 1.99419 2.65626 3.31672 3.52482 3.67105 3.71838 3.74082 3.78805 3.86758 3.92676 4.05457 4.05836 4.27890 4.34114 4.41092 4.42511 4.46261 4.48841 4.51101 4.59608 4.64461 4.66596 4.73861 4.76552 4.78798 5.01862 5.04430 5.06438 5.10134 5.15757 5.21112 5.23330 5.30414 5.40732 5.43918 5.50857 5.58568 6.25559 6.47451 6.82521 6.90703 6.91771 7.13047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.047 4.047 3 Si 0.754 3.246 4 C -0.289 4.289 5 C 0.140 3.860 6 N -0.737 5.737 7 C 0.137 3.863 8 C 0.513 3.487 9 O -0.572 6.572 10 N -0.704 5.704 11 C 0.148 3.852 12 H 0.071 0.929 13 C -0.120 4.120 14 C -0.110 4.110 15 C -0.088 4.088 16 H 0.066 0.934 17 C 0.075 3.925 18 O -0.598 6.598 19 C -0.100 4.100 20 C -0.128 4.128 21 C -0.118 4.118 22 C -0.052 4.052 23 H 0.391 0.609 24 H 0.094 0.906 25 H -0.306 1.306 26 H -0.288 1.288 27 H 0.143 0.857 28 H 0.408 0.592 29 H 0.107 0.893 30 H 0.413 0.587 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.395 0.605 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.574 -4.681 0.174 5.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.158 4.158 3 Si 0.663 3.337 4 C -0.300 4.300 5 C 0.020 3.980 6 N -0.370 5.370 7 C 0.028 3.972 8 C 0.299 3.701 9 O -0.451 6.451 10 N -0.357 5.357 11 C 0.044 3.956 12 H 0.089 0.911 13 C -0.158 4.158 14 C -0.147 4.147 15 C -0.106 4.106 16 H 0.085 0.915 17 C -0.002 4.002 18 O -0.406 6.406 19 C -0.138 4.138 20 C -0.166 4.166 21 C -0.157 4.157 22 C -0.089 4.089 23 H 0.240 0.760 24 H 0.111 0.889 25 H -0.235 1.235 26 H -0.215 1.215 27 H 0.160 0.840 28 H 0.244 0.756 29 H 0.124 0.876 30 H 0.252 0.748 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.244 0.756 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.209 -3.482 0.107 4.736 hybrid contribution -0.010 -0.879 0.526 1.024 sum 3.200 -4.360 0.632 5.445 Atomic orbital electron populations 1.86421 1.18219 1.82076 1.50303 1.24731 0.84636 1.08789 0.97668 0.94110 0.77690 0.76953 0.84966 1.21058 1.08599 0.99089 1.01205 1.20483 0.93794 0.96826 0.86931 1.44365 1.68043 1.05003 1.19577 1.21086 1.00187 0.83792 0.92096 1.20827 0.75581 0.82616 0.91034 1.90718 1.51859 1.50959 1.51556 1.45962 1.69765 1.10543 1.09392 1.20922 0.95584 0.97694 0.81421 0.91106 1.21782 0.98144 0.93181 1.02674 1.21510 0.94884 0.98541 0.99786 1.21176 0.95153 0.93921 1.00377 0.91547 1.22329 0.85967 0.96475 0.95433 1.86444 1.39992 1.56193 1.57998 1.21387 0.98171 0.93770 1.00480 1.21872 0.96583 0.98012 1.00166 1.21795 0.94279 1.02330 0.97251 1.19997 1.01900 0.92502 0.94512 0.75981 0.88888 1.23512 1.21521 0.84046 0.75574 0.87557 0.74839 0.89838 0.89863 0.90002 0.90482 0.92652 0.92595 0.75584 0.93130 0.91626 0.93644 0.90943 0.92186 0.88679 0.90828 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.19 12.55 -148.98 -1.87 -3.06 16 2 C -0.05 -0.04 2.83 71.24 0.20 0.16 16 3 Si 0.75 -0.31 29.68 68.60 2.04 1.73 16 4 C -0.29 0.01 5.46 -16.63 -0.09 -0.08 16 5 C 0.14 -0.10 9.63 83.41 0.80 0.70 16 6 N -0.74 -0.08 5.47 -329.01 -1.80 -1.88 16 7 C 0.14 -0.29 3.36 44.33 0.15 -0.14 16 8 C 0.51 0.58 7.06 87.66 0.62 1.19 16 9 O -0.57 -5.55 15.72 -3.04 -0.05 -5.60 16 10 N -0.70 2.92 4.23 -442.53 -1.87 1.04 16 11 C 0.15 -0.32 2.78 44.99 0.13 -0.20 16 12 H 0.07 0.16 7.58 -2.39 -0.02 0.14 16 13 C -0.12 0.81 5.61 30.59 0.17 0.99 16 14 C -0.11 0.92 5.03 30.60 0.15 1.07 16 15 C -0.09 0.34 2.43 -10.80 -0.03 0.32 16 16 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 17 C 0.08 -0.33 6.43 71.98 0.46 0.13 16 18 O -0.60 0.17 13.19 -148.98 -1.97 -1.80 16 19 C -0.10 0.12 4.94 30.59 0.15 0.27 16 20 C -0.13 -0.04 5.60 30.60 0.17 0.13 16 21 C -0.12 0.31 5.46 30.79 0.17 0.48 16 22 C -0.05 0.06 5.86 29.84 0.17 0.24 16 23 H 0.39 -2.06 8.70 -74.05 -0.64 -2.70 16 24 H 0.09 0.23 7.96 -2.38 -0.02 0.21 16 25 H -0.31 -2.39 7.11 99.48 0.71 -1.68 16 26 H -0.29 -1.10 7.10 99.48 0.71 -0.40 16 27 H 0.14 -0.51 4.36 -2.91 -0.01 -0.52 16 28 H 0.41 0.38 8.08 -92.71 -0.75 -0.37 16 29 H 0.11 -0.61 8.14 -2.39 -0.02 -0.63 16 30 H 0.41 -3.96 6.87 -92.71 -0.64 -4.59 16 31 H 0.08 -0.54 8.14 -2.38 -0.02 -0.55 16 32 H 0.08 -0.67 8.14 -2.38 -0.02 -0.69 16 33 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 34 H 0.08 -0.86 6.51 -2.39 -0.02 -0.87 16 35 H 0.06 -0.35 8.14 -2.39 -0.02 -0.37 16 36 H 0.06 -0.38 8.14 -2.39 -0.02 -0.40 16 37 H 0.39 -3.24 9.12 -74.06 -0.68 -3.92 16 38 H 0.05 0.17 7.82 -2.39 -0.02 0.15 16 39 H 0.07 -0.17 7.60 -2.39 -0.02 -0.19 16 40 H 0.04 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.07 0.03 8.14 -2.38 -0.02 0.01 16 42 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 44 H 0.07 0.04 7.84 -2.39 -0.02 0.02 16 45 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 Total: 0.00 -19.14 347.68 -3.93 -23.07 By element: Atomic # 1 Polarization: -17.13 SS G_CDS: -1.65 Total: -18.78 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 3.23 Total: 5.26 kcal Atomic # 7 Polarization: 2.84 SS G_CDS: -3.67 Total: -0.84 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -3.88 Total: -10.46 kcal Atomic # 14 Polarization: -0.31 SS G_CDS: 2.04 Total: 1.73 kcal Total: -19.14 -3.93 -23.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_15413834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.759 kcal (2) G-P(sol) polarization free energy of solvation -19.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds