Wall clock time and date at job start Tue Mar 9 2021 14:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86308 * 109.46999 * 2 1 4 4 C 1.50696 * 109.47075 * 119.99967 * 2 1 3 5 5 C 1.31116 * 118.54768 * 259.21891 * 4 2 1 6 6 N 1.38925 * 121.84975 * 179.57593 * 5 4 2 7 7 C 1.47027 * 118.88474 * 13.33157 * 6 5 4 8 8 C 1.53534 * 107.64915 * 316.32402 * 7 6 5 9 9 C 1.50201 * 118.54785 * 79.19770 * 4 2 1 10 10 C 1.50704 * 109.32979 * 320.30883 * 9 4 2 11 11 O 1.21277 * 120.00035 * 274.25739 * 10 9 4 12 12 N 1.34776 * 119.99678 * 94.25278 * 10 9 4 13 13 C 1.46500 * 119.99983 * 184.84308 * 12 10 9 14 14 H 1.09006 * 109.46940 * 319.53209 * 13 12 10 15 15 C 1.52998 * 109.47262 * 79.52666 * 13 12 10 16 16 C 1.53004 * 109.46838 * 60.00409 * 15 13 12 17 17 C 1.53001 * 109.47291 * 60.00022 * 16 15 13 18 18 H 1.08999 * 109.47236 * 59.99691 * 17 16 15 19 19 C 1.53001 * 109.46933 * 179.97438 * 17 16 15 20 20 O 1.42895 * 109.47333 * 294.99950 * 19 17 16 21 21 C 1.52993 * 109.46838 * 299.99784 * 17 16 15 22 22 C 1.53001 * 109.47320 * 199.52921 * 13 12 10 23 23 H 0.96700 * 113.99803 * 300.00402 * 1 2 3 24 24 H 1.08998 * 109.47179 * 240.00292 * 2 1 3 25 25 H 1.48498 * 109.99469 * 178.68255 * 3 2 1 26 26 H 1.48503 * 109.99736 * 299.99772 * 3 2 1 27 27 H 1.08007 * 119.07569 * 359.59551 * 5 4 2 28 28 H 0.97003 * 120.55481 * 193.36148 * 6 5 4 29 29 H 1.09003 * 109.81885 * 75.88095 * 7 6 5 30 30 H 1.08994 * 109.82092 * 196.79855 * 7 6 5 31 31 H 1.08991 * 109.60278 * 301.22439 * 8 7 6 32 32 H 1.09006 * 109.62471 * 180.67978 * 8 7 6 33 33 H 1.09002 * 109.32983 * 79.96046 * 9 4 2 34 34 H 0.97005 * 120.00051 * 4.84001 * 12 10 9 35 35 H 1.08999 * 109.47380 * 179.97438 * 15 13 12 36 36 H 1.08994 * 109.47307 * 300.00402 * 15 13 12 37 37 H 1.08999 * 109.47233 * 299.99711 * 16 15 13 38 38 H 1.09003 * 109.47125 * 180.02562 * 16 15 13 39 39 H 1.09008 * 109.47128 * 55.00085 * 19 17 16 40 40 H 1.08999 * 109.46796 * 174.99308 * 19 17 16 41 41 H 0.96702 * 114.00169 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.47082 * 179.97438 * 21 17 16 43 43 H 1.08999 * 109.47538 * 300.00324 * 21 17 16 44 44 H 1.08999 * 109.47236 * 179.97438 * 22 13 12 45 45 H 1.09002 * 109.46771 * 59.99700 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.3433 0.0100 2.2456 6 7 2.8116 -0.5732 3.4163 7 6 3.1254 -2.0096 3.4180 8 6 1.9925 -2.7344 2.6774 9 6 1.9375 -2.2124 1.2399 10 6 0.6856 -2.7205 0.5723 11 8 -0.3353 -2.8478 1.2145 12 7 0.7005 -3.0334 -0.7386 13 6 -0.5399 -3.4257 -1.4122 14 1 -1.1213 -4.0725 -0.7550 15 6 -1.3550 -2.1754 -1.7487 16 6 -0.5389 -1.2676 -2.6711 17 6 -0.2032 -2.0199 -3.9604 18 1 -1.1260 -2.3118 -4.4616 19 6 0.6124 -1.1118 -4.8830 20 8 -0.1905 -0.0023 -5.2908 21 6 0.6119 -3.2701 -3.6239 22 6 -0.2042 -4.1780 -2.7015 23 1 -0.3933 0.4418 0.7650 24 1 1.7924 -0.5138 -0.8900 25 1 3.5346 1.7703 0.0321 26 1 1.5615 2.4679 -1.2086 27 1 2.3176 1.0871 2.1696 28 1 2.9292 -0.0418 4.2192 29 1 4.0719 -2.1818 2.9055 30 1 3.1882 -2.3730 4.4436 31 1 1.0438 -2.5354 3.1758 32 1 2.1872 -3.8069 2.6701 33 1 2.8093 -2.5731 0.6940 34 1 1.5326 -2.9989 -1.2360 35 1 -2.2776 -2.4673 -2.2503 36 1 -1.5941 -1.6395 -0.8302 37 1 0.3840 -0.9757 -2.1700 38 1 -1.1193 -0.3766 -2.9105 39 1 1.4913 -0.7480 -4.3506 40 1 0.9271 -1.6750 -5.7616 41 1 0.2633 0.6164 -5.8793 42 1 0.8507 -3.8063 -4.5424 43 1 1.5348 -2.9783 -3.1227 44 1 -1.1271 -4.4703 -3.2024 45 1 0.3765 -5.0687 -2.4617 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_15608500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:58:05 Heat of formation + Delta-G solvation = -109.726823 kcal Electronic energy + Delta-G solvation = -26843.367561 eV Core-core repulsion = 23247.685958 eV Total energy + Delta-G solvation = -3595.681603 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.59626 -40.10820 -38.84624 -37.48181 -37.30011 -34.66914 -33.45596 -32.63029 -31.72106 -31.28891 -27.25381 -26.51244 -25.56329 -23.65832 -23.11408 -22.27885 -21.84365 -20.10102 -19.19617 -18.93267 -18.25058 -18.07675 -17.19579 -16.77131 -16.62172 -16.25027 -15.78108 -15.73647 -15.49261 -15.14595 -14.96094 -14.69746 -14.46725 -14.30975 -14.03880 -13.90235 -13.84493 -13.32619 -13.22697 -13.06336 -12.95247 -12.61171 -12.44607 -12.24107 -12.07340 -11.91784 -11.73036 -11.45862 -11.32842 -11.24228 -11.08641 -10.80120 -10.58106 -10.09499 -9.86465 -8.37737 -4.99005 1.34469 1.42485 1.65374 1.93348 2.01989 2.39711 2.72082 3.27942 3.68006 3.69712 3.76804 3.80769 3.90153 3.96978 4.04349 4.10441 4.22189 4.33719 4.37248 4.39445 4.45215 4.46222 4.51422 4.56855 4.63551 4.64509 4.69858 4.75447 4.78947 4.81057 4.87001 5.02535 5.14899 5.17275 5.21260 5.25222 5.30800 5.41246 5.49118 5.52107 5.55348 5.72733 6.37658 6.71207 6.83876 6.92325 7.02673 7.47122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.045 4.045 3 Si 0.751 3.249 4 C -0.294 4.294 5 C 0.161 3.839 6 N -0.747 5.747 7 C 0.123 3.877 8 C -0.123 4.123 9 C -0.037 4.037 10 C 0.539 3.461 11 O -0.580 6.580 12 N -0.711 5.711 13 C 0.153 3.847 14 H 0.060 0.940 15 C -0.118 4.118 16 C -0.086 4.086 17 C -0.092 4.092 18 H 0.064 0.936 19 C 0.077 3.923 20 O -0.596 6.596 21 C -0.106 4.106 22 C -0.120 4.120 23 H 0.381 0.619 24 H 0.094 0.906 25 H -0.287 1.287 26 H -0.310 1.310 27 H 0.154 0.846 28 H 0.414 0.586 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.403 0.597 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.038 0.962 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.393 0.607 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.447 0.539 1.351 6.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.157 4.157 3 Si 0.659 3.341 4 C -0.305 4.305 5 C 0.039 3.961 6 N -0.378 5.378 7 C -0.001 4.001 8 C -0.162 4.162 9 C -0.058 4.058 10 C 0.326 3.674 11 O -0.459 6.459 12 N -0.363 5.363 13 C 0.048 3.952 14 H 0.078 0.922 15 C -0.157 4.157 16 C -0.123 4.123 17 C -0.111 4.111 18 H 0.082 0.918 19 C 0.000 4.000 20 O -0.404 6.404 21 C -0.144 4.144 22 C -0.157 4.157 23 H 0.229 0.771 24 H 0.111 0.889 25 H -0.214 1.214 26 H -0.238 1.238 27 H 0.171 0.829 28 H 0.250 0.750 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.240 0.760 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.242 0.758 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.888 0.282 1.198 6.016 hybrid contribution 0.563 0.032 -0.708 0.906 sum 6.452 0.314 0.490 6.478 Atomic orbital electron populations 1.86556 1.17648 1.81791 1.49339 1.24722 0.85195 1.08571 0.97174 0.94266 0.77638 0.76659 0.85517 1.20439 1.16955 0.93295 0.99789 1.20575 0.92428 0.96830 0.86273 1.44650 1.72188 1.09316 1.11610 1.21634 0.96292 0.80433 1.01761 1.21748 1.00067 1.00209 0.94191 1.19679 0.95119 0.93943 0.97100 1.20608 0.90024 0.74998 0.81734 1.90637 1.35664 1.54580 1.65054 1.46004 1.11315 1.69370 1.09633 1.20774 0.85747 0.95251 0.93443 0.92207 1.21742 0.97872 0.96446 0.99599 1.21254 1.00290 0.96844 0.93939 1.21244 0.99120 0.95080 0.95620 0.91760 1.22309 0.92838 0.87462 0.97393 1.86460 1.44498 1.38746 1.70661 1.21468 0.98102 0.94637 1.00180 1.21765 1.01794 0.98172 0.94014 0.77058 0.88887 1.21361 1.23841 0.82915 0.74992 0.91442 0.88419 0.92231 0.90408 0.88849 0.76020 0.92549 0.92429 0.91377 0.94325 0.93431 0.92443 0.75774 0.90060 0.91096 0.90135 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.50 8.98 -148.98 -1.34 -2.84 16 2 C -0.05 0.01 1.81 71.23 0.13 0.14 16 3 Si 0.75 -1.05 29.86 68.60 2.05 1.00 16 4 C -0.29 0.20 4.99 -16.76 -0.08 0.12 16 5 C 0.16 -0.61 9.61 83.41 0.80 0.19 16 6 N -0.75 3.96 5.83 -345.91 -2.02 1.94 16 7 C 0.12 -0.61 7.16 86.46 0.62 0.01 16 8 C -0.12 -0.03 5.30 30.79 0.16 0.13 16 9 C -0.04 -0.03 2.70 -12.43 -0.03 -0.06 16 10 C 0.54 3.24 4.90 87.66 0.43 3.67 16 11 O -0.58 -8.64 15.66 -3.02 -0.05 -8.68 16 12 N -0.71 -1.29 4.24 -442.53 -1.88 -3.17 16 13 C 0.15 0.54 2.76 44.99 0.12 0.67 16 14 H 0.06 0.49 7.69 -2.38 -0.02 0.47 16 15 C -0.12 -0.76 5.32 30.60 0.16 -0.60 16 16 C -0.09 -0.44 4.32 30.60 0.13 -0.31 16 17 C -0.09 -0.15 2.43 -10.79 -0.03 -0.17 16 18 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 19 C 0.08 0.05 6.43 71.98 0.46 0.51 16 20 O -0.60 -2.61 13.19 -148.98 -1.97 -4.58 16 21 C -0.11 0.34 5.03 30.59 0.15 0.49 16 22 C -0.12 0.21 5.59 30.60 0.17 0.38 16 23 H 0.38 -0.72 8.70 -74.06 -0.64 -1.36 16 24 H 0.09 0.07 6.63 -2.39 -0.02 0.06 16 25 H -0.29 -0.85 7.11 99.48 0.71 -0.14 16 26 H -0.31 -2.35 7.11 99.48 0.71 -1.64 16 27 H 0.15 -1.32 4.79 -2.91 -0.01 -1.33 16 28 H 0.41 -3.87 8.96 -92.71 -0.83 -4.70 16 29 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H 0.10 -0.77 8.14 -2.39 -0.02 -0.79 16 31 H 0.06 0.37 7.50 -2.39 -0.02 0.35 16 32 H 0.08 -0.06 8.14 -2.38 -0.02 -0.08 16 33 H 0.09 -0.24 8.09 -2.39 -0.02 -0.26 16 34 H 0.40 -1.09 6.86 -92.70 -0.64 -1.72 16 35 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.06 0.68 6.86 -2.39 -0.02 0.66 16 37 H 0.07 0.33 4.89 -2.39 -0.01 0.32 16 38 H 0.04 0.41 7.82 -2.39 -0.02 0.39 16 39 H 0.05 -0.04 8.14 -2.38 -0.02 -0.06 16 40 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.39 -1.55 9.12 -74.06 -0.68 -2.22 16 42 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 43 H 0.07 -0.36 6.55 -2.39 -0.02 -0.38 16 44 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 Total: 0.00 -20.75 336.19 -3.71 -24.45 By element: Atomic # 1 Polarization: -11.56 SS G_CDS: -1.71 Total: -13.27 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 3.20 Total: 5.16 kcal Atomic # 7 Polarization: 2.67 SS G_CDS: -3.89 Total: -1.23 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -3.35 Total: -16.10 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: 2.05 Total: 1.00 kcal Total: -20.75 -3.71 -24.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_15608500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.275 kcal (2) G-P(sol) polarization free energy of solvation -20.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds