Wall clock time and date at job start Tue Mar 9 2021 14:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86305 * 109.46832 * 2 1 4 4 C 1.50700 * 109.47064 * 119.99802 * 2 1 3 5 5 C 1.34498 * 125.49014 * 210.28831 * 4 2 1 6 6 C 1.46753 * 106.36185 * 180.12205 * 5 4 2 7 7 C 1.47264 * 126.96926 * 179.87666 * 6 5 4 8 8 O 1.21625 * 119.99877 * 179.68384 * 7 6 5 9 9 N 1.34777 * 119.99880 * 359.69361 * 7 6 5 10 10 C 1.46500 * 119.99995 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46596 * 324.99417 * 10 9 7 12 12 C 1.52997 * 109.47473 * 84.99514 * 10 9 7 13 13 C 1.52999 * 109.46991 * 59.99688 * 12 10 9 14 14 C 1.53006 * 109.46626 * 60.00378 * 13 12 10 15 15 H 1.09001 * 109.46801 * 59.99811 * 14 13 12 16 16 C 1.52999 * 109.46623 * 179.97438 * 14 13 12 17 17 O 1.42903 * 109.46930 * 184.99924 * 16 14 13 18 18 C 1.52997 * 109.47127 * 299.99539 * 14 13 12 19 19 C 1.52996 * 109.47249 * 204.99819 * 10 9 7 20 20 C 1.36331 * 106.06307 * 359.62012 * 6 5 4 21 21 C 1.50999 * 126.79465 * 180.24667 * 20 6 5 22 22 C 1.53398 * 108.25399 * 164.33061 * 21 20 6 23 23 C 1.53163 * 109.04731 * 48.45702 * 22 21 20 24 24 C 1.53127 * 109.52195 * 290.42819 * 23 22 21 25 25 N 1.35223 * 108.66016 * 0.24872 * 20 6 5 26 26 H 0.96698 * 113.99918 * 59.99821 * 1 2 3 27 27 H 1.08994 * 109.47084 * 240.00365 * 2 1 3 28 28 H 1.48495 * 110.00133 * 60.00236 * 3 2 1 29 29 H 1.48501 * 110.00010 * 181.31923 * 3 2 1 30 30 H 1.07999 * 126.82134 * 359.97438 * 5 4 2 31 31 H 0.96995 * 120.00034 * 359.97438 * 9 7 6 32 32 H 1.09002 * 109.47153 * 300.00243 * 12 10 9 33 33 H 1.08993 * 109.47194 * 180.02562 * 12 10 9 34 34 H 1.08993 * 109.47839 * 300.00447 * 13 12 10 35 35 H 1.09000 * 109.47160 * 180.02562 * 13 12 10 36 36 H 1.08994 * 109.47465 * 305.00017 * 16 14 13 37 37 H 1.08998 * 109.47565 * 65.00449 * 16 14 13 38 38 H 0.96703 * 114.00236 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47153 * 180.02562 * 18 14 13 40 40 H 1.08996 * 109.46952 * 300.00302 * 18 14 13 41 41 H 1.08996 * 109.47452 * 179.97438 * 19 10 9 42 42 H 1.09000 * 109.47054 * 59.99646 * 19 10 9 43 43 H 1.08999 * 109.70512 * 284.01686 * 21 20 6 44 44 H 1.08991 * 109.70468 * 44.59904 * 21 20 6 45 45 H 1.09007 * 109.53933 * 168.32361 * 22 21 20 46 46 H 1.08997 * 109.54090 * 288.49966 * 22 21 20 47 47 H 1.08995 * 109.46241 * 50.44553 * 23 22 21 48 48 H 1.08995 * 109.46246 * 170.42077 * 23 22 21 49 49 H 1.09006 * 109.56445 * 170.83776 * 24 23 22 50 50 H 1.09005 * 109.56544 * 291.17304 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 3.0832 -0.4425 1.8712 6 6 3.1553 -1.3773 3.0002 7 6 4.2331 -1.4789 3.9985 8 8 4.1599 -2.3021 4.8908 9 7 5.3006 -0.6595 3.9234 10 6 6.3726 -0.7602 4.9168 11 1 5.9462 -1.0161 5.8867 12 6 7.3616 -1.8474 4.4916 13 6 7.9600 -1.4882 3.1301 14 6 8.6891 -0.1468 3.2314 15 1 9.4867 -0.2218 3.9705 16 6 9.2881 0.2120 1.8700 17 8 10.0662 1.4044 1.9914 18 6 7.7001 0.9403 3.6565 19 6 7.1016 0.5811 5.0181 20 6 2.0193 -2.1288 2.9409 21 6 1.6152 -3.2334 3.8877 22 6 0.1224 -3.5205 3.6820 23 6 -0.1558 -3.6708 2.1833 24 6 -0.0048 -2.3109 1.4959 25 7 1.2885 -1.7250 1.8771 26 1 -0.3933 0.4417 -0.7650 27 1 1.7924 -0.5137 -0.8900 28 1 1.5615 2.4679 1.2085 29 1 3.5346 1.7704 -0.0321 30 1 3.8116 0.3094 1.6060 31 1 5.3591 -0.0032 3.2116 32 1 6.8422 -2.8030 4.4194 33 1 8.1589 -1.9225 5.2309 34 1 7.1625 -1.4133 2.3909 35 1 8.6643 -2.2630 2.8269 36 1 9.9243 -0.6036 1.5265 37 1 8.4850 0.3739 1.1510 38 1 10.4768 1.6921 1.1645 39 1 8.2194 1.8960 3.7283 40 1 6.9026 1.0152 2.9174 41 1 7.8990 0.5064 5.7575 42 1 6.3971 1.3556 5.3210 43 1 2.1949 -4.1313 3.6738 44 1 1.7912 -2.9186 4.9162 45 1 -0.1458 -4.4430 4.1969 46 1 -0.4661 -2.6950 4.0823 47 1 0.5534 -4.3768 1.7514 48 1 -1.1707 -4.0406 2.0377 49 1 -0.0412 -2.4425 0.4144 50 1 -0.8122 -1.6504 1.8122 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_16915396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 14:58:07 Heat of formation + Delta-G solvation = -91.494018 kcal Electronic energy + Delta-G solvation = -30689.558921 eV Core-core repulsion = 26682.678052 eV Total energy + Delta-G solvation = -4006.880869 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.193 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.88189 -41.13460 -39.34356 -37.87964 -37.44806 -36.92353 -34.76134 -33.64486 -31.90121 -31.68115 -31.27845 -29.39047 -26.82271 -26.28052 -24.61553 -24.19886 -23.71569 -22.17839 -21.71981 -21.49029 -20.19486 -19.60648 -18.56324 -18.24727 -18.20274 -17.01339 -16.87680 -16.80635 -16.33134 -15.92904 -15.84392 -15.76208 -15.49981 -15.21648 -15.15502 -15.00224 -14.82690 -14.59501 -14.47567 -14.29192 -14.02334 -13.85562 -13.38221 -13.29604 -13.18813 -13.09515 -12.87006 -12.58467 -12.54340 -12.19725 -12.14229 -12.04869 -11.87348 -11.83880 -11.56185 -11.35277 -11.16793 -10.99167 -10.85461 -10.57284 -10.13979 -9.71005 -9.14465 -4.97752 0.60834 0.94146 1.36342 1.67313 1.76523 2.06315 2.33130 2.42118 3.16595 3.25885 3.48502 3.53573 3.60501 3.67076 3.70180 3.74575 3.80790 3.85399 4.00773 4.06878 4.20619 4.22280 4.31701 4.32699 4.35053 4.36920 4.43302 4.44555 4.46025 4.48110 4.61866 4.65534 4.68389 4.70823 4.73113 4.76178 4.89998 4.93328 4.94975 5.01063 5.05285 5.08293 5.09256 5.16478 5.18207 5.35202 5.38771 5.51833 5.56876 5.93729 6.12066 6.54424 6.83576 6.86688 7.24971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.051 4.051 3 Si 0.803 3.197 4 C 0.028 3.972 5 C -0.194 4.194 6 C -0.258 4.258 7 C 0.589 3.411 8 O -0.583 6.583 9 N -0.710 5.710 10 C 0.147 3.853 11 H 0.070 0.930 12 C -0.124 4.124 13 C -0.104 4.104 14 C -0.085 4.085 15 H 0.074 0.926 16 C 0.078 3.922 17 O -0.592 6.592 18 C -0.106 4.106 19 C -0.121 4.121 20 C 0.104 3.896 21 C -0.052 4.052 22 C -0.124 4.124 23 C -0.135 4.135 24 C 0.111 3.889 25 N -0.423 5.423 26 H 0.409 0.591 27 H 0.102 0.898 28 H -0.312 1.312 29 H -0.280 1.280 30 H 0.153 0.847 31 H 0.404 0.596 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.395 0.605 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.112 0.888 49 H 0.106 0.894 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.735 1.710 -8.838 9.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.160 4.160 3 Si 0.707 3.293 4 C -0.082 4.082 5 C -0.217 4.217 6 C -0.267 4.267 7 C 0.379 3.621 8 O -0.465 6.465 9 N -0.362 5.362 10 C 0.043 3.957 11 H 0.088 0.912 12 C -0.163 4.163 13 C -0.142 4.142 14 C -0.103 4.103 15 H 0.092 0.908 16 C 0.001 3.999 17 O -0.400 6.400 18 C -0.144 4.144 19 C -0.159 4.159 20 C -0.014 4.014 21 C -0.090 4.090 22 C -0.162 4.162 23 C -0.172 4.172 24 C -0.008 4.008 25 N -0.099 5.099 26 H 0.262 0.738 27 H 0.120 0.880 28 H -0.240 1.240 29 H -0.207 1.207 30 H 0.170 0.830 31 H 0.241 0.759 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.245 0.755 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.112 0.888 46 H 0.083 0.917 47 H 0.090 0.910 48 H 0.131 0.869 49 H 0.124 0.876 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.750 1.248 -6.791 7.432 hybrid contribution 0.466 -0.192 -0.351 0.614 sum -2.284 1.055 -7.141 7.572 Atomic orbital electron populations 1.86380 1.16635 1.82452 1.51934 1.24569 0.86235 1.10540 0.94674 0.94613 0.77751 0.72553 0.84338 1.20286 0.94683 0.94170 0.99026 1.21767 0.99397 1.03134 0.97440 1.19999 0.98709 1.05791 1.02240 1.17502 0.81296 0.80013 0.83255 1.90722 1.80108 1.38398 1.37303 1.45830 1.20203 1.38247 1.31886 1.20943 0.86773 0.96312 0.91685 0.91160 1.21829 0.98450 0.97816 0.98163 1.21402 0.99452 0.96287 0.97057 1.21133 0.97588 0.94714 0.96893 0.90806 1.22248 0.94039 0.86784 0.96877 1.86427 1.69587 1.44334 1.39699 1.21470 0.97914 0.98816 0.96194 1.21800 1.00176 0.95185 0.98755 1.20653 0.91518 0.98386 0.90882 1.20458 0.97246 0.94388 0.96912 1.21710 0.94093 1.03501 0.96893 1.21963 1.04899 0.95366 0.94970 1.22258 0.81554 0.95007 1.01982 1.44117 1.18081 1.26850 1.20842 0.73814 0.88037 1.24047 1.20653 0.82983 0.75931 0.93176 0.89960 0.92137 0.91117 0.92937 0.93053 0.75500 0.91206 0.92223 0.89385 0.91101 0.89819 0.90159 0.88816 0.91669 0.91021 0.86936 0.87594 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.82 10.65 -148.98 -1.59 1.23 16 2 C -0.05 0.15 2.98 71.24 0.21 0.37 16 3 Si 0.80 -3.17 31.21 68.60 2.14 -1.02 16 4 C 0.03 0.15 6.19 40.99 0.25 0.40 16 5 C -0.19 -1.41 9.08 23.64 0.21 -1.19 16 6 C -0.26 -2.91 6.28 -19.12 -0.12 -3.03 16 7 C 0.59 7.56 7.77 86.62 0.67 8.24 16 8 O -0.58 -10.88 15.00 -4.11 -0.06 -10.94 16 9 N -0.71 -4.76 4.23 -445.96 -1.89 -6.65 16 10 C 0.15 0.76 2.78 44.99 0.13 0.89 16 11 H 0.07 0.65 7.58 -2.39 -0.02 0.63 16 12 C -0.12 -0.51 5.60 30.59 0.17 -0.34 16 13 C -0.10 -0.13 5.05 30.60 0.15 0.03 16 14 C -0.08 -0.05 2.43 -10.79 -0.03 -0.08 16 15 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 16 C 0.08 -0.05 6.43 71.98 0.46 0.41 16 17 O -0.59 -0.73 13.20 -148.98 -1.97 -2.69 16 18 C -0.11 -0.08 4.93 30.59 0.15 0.07 16 19 C -0.12 -0.15 5.61 30.59 0.17 0.02 16 20 C 0.10 1.01 6.57 41.69 0.27 1.28 16 21 C -0.05 -0.37 5.32 30.08 0.16 -0.21 16 22 C -0.12 -0.07 5.98 30.78 0.18 0.11 16 23 C -0.13 0.34 5.92 30.69 0.18 0.52 16 24 C 0.11 -0.03 5.32 86.32 0.46 0.43 16 25 N -0.42 -2.51 3.11 -493.61 -1.54 -4.05 16 26 H 0.41 -6.35 8.74 -74.06 -0.65 -7.00 16 27 H 0.10 -0.75 7.96 -2.39 -0.02 -0.77 16 28 H -0.31 -1.94 7.11 99.48 0.71 -1.23 16 29 H -0.28 -0.04 6.88 99.48 0.68 0.65 16 30 H 0.15 0.58 6.36 -2.91 -0.02 0.56 16 31 H 0.40 1.37 5.99 -92.71 -0.56 0.82 16 32 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.08 0.17 8.14 -2.39 -0.02 0.16 16 34 H 0.06 0.13 7.60 -2.39 -0.02 0.12 16 35 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 37 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 38 H 0.40 -2.73 9.12 -74.05 -0.68 -3.41 16 39 H 0.07 0.17 7.82 -2.39 -0.02 0.15 16 40 H 0.06 0.00 6.51 -2.39 -0.02 -0.02 16 41 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.08 0.86 7.40 -2.39 -0.02 0.84 16 45 H 0.09 -0.20 8.14 -2.38 -0.02 -0.22 16 46 H 0.06 0.10 8.12 -2.39 -0.02 0.08 16 47 H 0.07 -0.11 8.11 -2.39 -0.02 -0.13 16 48 H 0.11 -0.78 8.14 -2.39 -0.02 -0.80 16 49 H 0.11 -0.29 7.69 -2.38 -0.02 -0.31 16 50 H 0.09 0.00 8.00 -2.38 -0.02 -0.02 16 Total: 0.00 -23.07 382.20 -2.09 -25.16 By element: Atomic # 1 Polarization: -8.05 SS G_CDS: -0.90 Total: -8.95 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 3.70 Total: 7.92 kcal Atomic # 7 Polarization: -7.28 SS G_CDS: -3.42 Total: -10.70 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -3.61 Total: -12.41 kcal Atomic # 14 Polarization: -3.17 SS G_CDS: 2.14 Total: -1.02 kcal Total: -23.07 -2.09 -25.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_16915396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.330 kcal (2) G-P(sol) polarization free energy of solvation -23.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds