Wall clock time and date at job start Tue Mar 9 2021 12:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35898 * 116.99775 * 2 1 4 4 C 1.38614 * 120.02266 * 180.27592 * 3 2 1 5 5 C 1.38658 * 119.88809 * 180.20942 * 4 3 2 6 6 O 1.35898 * 120.02711 * 179.79164 * 5 4 3 7 7 C 1.42899 * 116.99885 * 359.72608 * 6 5 4 8 8 C 1.50696 * 109.46971 * 179.97438 * 7 6 5 9 9 O 1.21280 * 120.00119 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00163 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00246 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.47054 * 325.00425 * 11 10 8 13 13 C 1.53009 * 109.46981 * 84.99964 * 11 10 8 14 14 C 1.52989 * 109.47149 * 59.99775 * 13 11 10 15 15 C 1.53002 * 109.47252 * 60.00403 * 14 13 11 16 16 H 1.09001 * 109.47430 * 59.99214 * 15 14 13 17 17 C 1.52999 * 109.47645 * 179.97438 * 15 14 13 18 18 O 1.42905 * 109.46728 * 294.99875 * 17 15 14 19 19 C 1.53009 * 109.46714 * 299.99863 * 15 14 13 20 20 C 1.52989 * 109.47113 * 59.99678 * 19 15 14 21 21 C 1.38755 * 119.94477 * 359.51767 * 5 4 3 22 22 C 1.50695 * 119.97049 * 180.22821 * 21 5 4 23 23 O 1.42897 * 109.47544 * 285.00098 * 22 21 5 24 24 Si 1.86301 * 109.46797 * 165.00181 * 22 21 5 25 25 C 1.38198 * 120.05418 * 0.25376 * 21 5 4 26 26 C 1.38159 * 120.10860 * 359.97438 * 25 21 5 27 27 H 1.08994 * 109.46921 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46984 * 299.99715 * 1 2 3 29 29 H 1.08997 * 109.47023 * 59.99863 * 1 2 3 30 30 H 1.07999 * 120.05847 * 359.97438 * 4 3 2 31 31 H 1.08995 * 109.47320 * 60.00153 * 7 6 5 32 32 H 1.09000 * 109.47175 * 299.99650 * 7 6 5 33 33 H 0.97000 * 119.99724 * 359.97438 * 10 8 7 34 34 H 1.08993 * 109.46833 * 180.02562 * 13 11 10 35 35 H 1.08997 * 109.46604 * 299.99780 * 13 11 10 36 36 H 1.08993 * 109.47691 * 300.00011 * 14 13 11 37 37 H 1.09006 * 109.47359 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.47486 * 174.99813 * 17 15 14 39 39 H 1.09001 * 109.47362 * 54.99090 * 17 15 14 40 40 H 0.96696 * 114.00036 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.47112 * 180.02562 * 19 15 14 42 42 H 1.09001 * 109.46642 * 299.99833 * 19 15 14 43 43 H 1.09001 * 109.47240 * 60.00521 * 20 19 15 44 44 H 1.09007 * 109.47303 * 179.97438 * 20 19 15 45 45 H 1.08997 * 109.47608 * 45.00492 * 22 21 5 46 46 H 0.96705 * 114.00043 * 300.00443 * 23 22 21 47 47 H 1.48499 * 110.00263 * 58.68146 * 24 22 21 48 48 H 1.48501 * 109.99962 * 180.02562 * 24 22 21 49 49 H 1.07999 * 119.94669 * 179.97438 * 25 21 5 50 50 H 1.07997 * 119.96766 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4302 1.2840 -0.0058 5 6 4.0567 2.5210 -0.0014 6 8 5.4136 2.5960 -0.0027 7 6 6.1316 1.3604 -0.0027 8 6 7.6124 1.6400 -0.0050 9 8 8.0135 2.7846 -0.0060 10 7 8.4912 0.6181 -0.0059 11 6 9.9308 0.8899 -0.0075 12 1 10.1310 1.7845 -0.5971 13 6 10.4102 1.1082 1.4291 14 6 10.1291 -0.1473 2.2568 15 6 10.8722 -1.3375 1.6466 16 1 11.9433 -1.1353 1.6453 17 6 10.5917 -2.5930 2.4747 18 8 11.1434 -2.4336 3.7833 19 6 10.3928 -1.5557 0.2100 20 6 10.6738 -0.3002 -0.6177 21 6 3.2971 3.6821 -0.0013 22 6 3.9775 5.0268 -0.0017 23 8 4.5041 5.2946 1.2994 24 14 2.7438 6.3467 -0.4561 25 6 1.9172 3.6065 -0.0003 26 6 1.2906 2.3752 0.0000 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.0197 0.3791 -0.0099 31 1 5.8691 0.7876 -0.8921 32 1 5.8709 0.7887 0.8879 33 1 8.1705 -0.2973 -0.0047 34 1 11.4811 1.3109 1.4278 35 1 9.8808 1.9561 1.8638 36 1 9.0581 -0.3496 2.2581 37 1 10.4711 0.0080 3.2802 38 1 11.0477 -3.4568 1.9909 39 1 9.5150 -2.7453 2.5505 40 1 11.0026 -3.1932 4.3647 41 1 10.9218 -2.4039 -0.2246 42 1 9.3217 -1.7580 0.2113 43 1 11.7449 -0.0979 -0.6189 44 1 10.3327 -0.4558 -1.6412 45 1 4.7897 5.0229 -0.7287 46 1 3.8358 5.3132 1.9981 47 1 1.6154 6.3413 0.5092 48 1 3.4025 7.6777 -0.4607 49 1 1.3277 4.5114 0.0001 50 1 0.2121 2.3188 0.0004 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_4974312.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:28 Heat of formation + Delta-G solvation = -168.410821 kcal Electronic energy + Delta-G solvation = -31976.391027 eV Core-core repulsion = 27549.773941 eV Total energy + Delta-G solvation = -4426.617086 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.181 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.89319 -41.30227 -40.14577 -39.39292 -38.36106 -37.46041 -37.00579 -34.88535 -32.36197 -32.10506 -31.81166 -31.20078 -29.20039 -28.34759 -26.31109 -26.13991 -23.93154 -23.66051 -22.51665 -22.25953 -21.94773 -20.28675 -19.92521 -18.75616 -18.26383 -18.15547 -17.80536 -17.56599 -17.27407 -16.74398 -16.68836 -16.50978 -16.43744 -16.03229 -15.90265 -15.67375 -15.37928 -15.18989 -14.92602 -14.77275 -14.63335 -14.50524 -13.95124 -13.76787 -13.58580 -13.41856 -13.33757 -13.23521 -13.14310 -13.05024 -12.50063 -12.44888 -12.30872 -12.16029 -12.04133 -11.66721 -11.63385 -11.58445 -11.34220 -11.13049 -11.01900 -10.82084 -10.52171 -10.16884 -9.71220 -9.11367 -4.93461 0.19102 0.29818 1.31134 1.42098 1.45282 1.55317 1.95970 2.24437 2.55157 2.58525 3.30148 3.48558 3.50187 3.65911 3.70448 3.71898 3.79512 3.88393 3.92503 4.01678 4.02782 4.05805 4.16011 4.26218 4.33965 4.38954 4.40022 4.40946 4.42366 4.45740 4.46929 4.48079 4.64931 4.65327 4.72220 4.74074 4.78809 4.99229 5.01359 5.03110 5.07732 5.13523 5.20577 5.22569 5.26951 5.37614 5.40626 5.45488 5.48396 6.12321 6.35124 6.43749 6.56400 6.89451 7.11068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.329 6.329 3 C 0.165 3.835 4 C -0.252 4.252 5 C 0.176 3.824 6 O -0.303 6.303 7 C 0.035 3.965 8 C 0.513 3.487 9 O -0.568 6.568 10 N -0.701 5.701 11 C 0.149 3.851 12 H 0.068 0.932 13 C -0.130 4.130 14 C -0.101 4.101 15 C -0.088 4.088 16 H 0.067 0.933 17 C 0.076 3.924 18 O -0.599 6.599 19 C -0.109 4.109 20 C -0.118 4.118 21 C -0.196 4.196 22 C -0.079 4.079 23 O -0.550 6.550 24 Si 0.783 3.217 25 C -0.041 4.041 26 C -0.237 4.237 27 H 0.116 0.884 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.153 0.847 31 H 0.125 0.875 32 H 0.117 0.883 33 H 0.416 0.584 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.395 0.605 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.381 0.619 47 H -0.262 1.262 48 H -0.308 1.308 49 H 0.156 0.844 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.741 -9.384 -3.011 11.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.119 3.881 4 C -0.271 4.271 5 C 0.130 3.870 6 O -0.215 6.215 7 C -0.043 4.043 8 C 0.299 3.701 9 O -0.446 6.446 10 N -0.357 5.357 11 C 0.045 3.955 12 H 0.087 0.913 13 C -0.169 4.169 14 C -0.139 4.139 15 C -0.106 4.106 16 H 0.086 0.914 17 C -0.002 4.002 18 O -0.407 6.407 19 C -0.147 4.147 20 C -0.156 4.156 21 C -0.197 4.197 22 C -0.186 4.186 23 O -0.358 6.358 24 Si 0.686 3.314 25 C -0.059 4.059 26 C -0.256 4.256 27 H 0.135 0.865 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.171 0.829 31 H 0.143 0.857 32 H 0.134 0.866 33 H 0.255 0.745 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.244 0.756 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.115 0.885 46 H 0.230 0.770 47 H -0.187 1.187 48 H -0.237 1.237 49 H 0.173 0.827 50 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.910 -7.316 -3.347 9.425 hybrid contribution 0.024 -0.943 1.706 1.949 sum -4.886 -8.259 -1.642 9.736 Atomic orbital electron populations 1.23402 0.75995 1.05707 1.02694 1.86056 1.23756 1.26537 1.87922 1.18865 0.91628 0.84994 0.92660 1.20549 0.93426 0.97379 1.15736 1.18601 0.81712 0.93214 0.93473 1.86227 1.15553 1.31626 1.88101 1.22737 0.88584 0.86504 1.06494 1.20466 0.88495 0.85285 0.75863 1.90774 1.80715 1.23234 1.49879 1.45805 1.05972 1.09306 1.74598 1.20939 0.79103 0.99405 0.96096 0.91338 1.21889 1.01493 0.97858 0.95618 1.21391 1.00244 0.93840 0.98382 1.21184 1.00576 0.93960 0.94906 0.91438 1.22332 0.97569 0.97289 0.82980 1.86447 1.81697 1.47164 1.25408 1.21515 1.02349 0.98015 0.92794 1.21778 1.01132 0.92957 0.99752 1.19610 0.93542 0.93936 1.12619 1.25178 1.06300 0.99844 0.87305 1.86655 1.38571 1.93071 1.17478 0.94109 0.75438 0.73281 0.88542 1.20948 0.91968 0.98846 0.94088 1.21399 1.01625 0.91210 1.11343 0.86543 0.91502 0.91082 0.82931 0.85735 0.86570 0.74511 0.90715 0.94154 0.91779 0.93173 0.92373 0.92630 0.75568 0.89656 0.90361 0.89703 0.89559 0.88542 0.77041 1.18750 1.23705 0.82685 0.82465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.11 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.19 10.49 -92.40 -0.97 -1.16 16 3 C 0.16 0.28 6.68 22.49 0.15 0.43 16 4 C -0.25 -0.61 8.97 22.46 0.20 -0.41 16 5 C 0.18 1.08 6.66 22.49 0.15 1.23 16 6 O -0.30 -2.81 8.99 -73.36 -0.66 -3.47 16 7 C 0.03 0.02 5.22 71.23 0.37 0.40 16 8 C 0.51 3.03 7.87 87.66 0.69 3.72 16 9 O -0.57 -10.06 16.16 16.01 0.26 -9.80 16 10 N -0.70 1.06 4.23 -442.53 -1.87 -0.82 16 11 C 0.15 0.08 2.78 44.99 0.13 0.21 16 12 H 0.07 0.39 7.58 -2.39 -0.02 0.37 16 13 C -0.13 -0.43 5.60 30.59 0.17 -0.26 16 14 C -0.10 -0.10 4.94 30.59 0.15 0.05 16 15 C -0.09 0.23 2.43 -10.79 -0.03 0.21 16 16 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 17 C 0.08 -0.27 6.43 71.98 0.46 0.19 16 18 O -0.60 -0.43 13.19 -148.98 -1.97 -2.40 16 19 C -0.11 0.83 5.03 30.59 0.15 0.98 16 20 C -0.12 0.64 5.61 30.59 0.17 0.82 16 21 C -0.20 -0.95 5.27 -19.75 -0.10 -1.06 16 22 C -0.08 -0.53 2.37 71.23 0.17 -0.37 16 23 O -0.55 -6.01 12.88 -148.98 -1.92 -7.92 16 24 Si 0.78 0.89 30.24 68.60 2.07 2.97 16 25 C -0.04 -0.01 8.65 22.24 0.19 0.19 16 26 C -0.24 0.21 9.04 22.38 0.20 0.41 16 27 H 0.12 -1.11 8.14 -2.39 -0.02 -1.13 16 28 H 0.07 -0.54 7.66 -2.39 -0.02 -0.56 16 29 H 0.07 -0.62 7.66 -2.39 -0.02 -0.63 16 30 H 0.15 -0.31 6.30 -2.91 -0.02 -0.33 16 31 H 0.13 -0.73 7.65 -2.39 -0.02 -0.74 16 32 H 0.12 -0.50 7.67 -2.39 -0.02 -0.52 16 33 H 0.42 -3.57 6.87 -92.71 -0.64 -4.20 16 34 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.06 -0.02 7.60 -2.39 -0.02 -0.04 16 37 H 0.05 0.27 7.82 -2.38 -0.02 0.26 16 38 H 0.06 -0.35 8.14 -2.39 -0.02 -0.37 16 39 H 0.06 -0.33 8.14 -2.39 -0.02 -0.35 16 40 H 0.39 -2.93 9.12 -74.06 -0.68 -3.60 16 41 H 0.08 -0.79 8.14 -2.39 -0.02 -0.81 16 42 H 0.08 -0.83 6.51 -2.39 -0.02 -0.84 16 43 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 44 H 0.09 -0.62 8.14 -2.38 -0.02 -0.64 16 45 H 0.10 0.97 7.82 -2.39 -0.02 0.95 16 46 H 0.38 1.27 8.70 -74.05 -0.64 0.62 16 47 H -0.26 -0.32 6.68 99.48 0.66 0.34 16 48 H -0.31 -2.97 7.11 99.48 0.71 -2.27 16 49 H 0.16 -0.63 4.85 -2.91 -0.01 -0.65 16 50 H 0.16 -0.97 6.29 -2.91 -0.02 -0.99 16 Total: 0.00 -29.23 396.74 -1.68 -30.91 By element: Atomic # 1 Polarization: -15.08 SS G_CDS: -0.97 Total: -16.05 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 4.35 Total: 7.74 kcal Atomic # 7 Polarization: 1.06 SS G_CDS: -1.87 Total: -0.82 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -5.26 Total: -24.75 kcal Atomic # 14 Polarization: 0.89 SS G_CDS: 2.07 Total: 2.97 kcal Total: -29.23 -1.68 -30.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_4974312.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.500 kcal (2) G-P(sol) polarization free energy of solvation -29.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds