Wall clock time and date at job start Tue Mar 9 2021 12:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.46909 * 2 1 4 4 C 1.50704 * 109.47565 * 239.99877 * 2 1 3 5 5 C 1.35452 * 125.56169 * 120.02146 * 4 2 1 6 6 C 1.39839 * 107.85974 * 179.71983 * 5 4 2 7 7 C 1.37869 * 107.08697 * 0.41826 * 6 5 4 8 8 C 1.46676 * 126.23406 * 179.84327 * 7 6 5 9 9 O 1.21694 * 120.00166 * 359.69110 * 8 7 6 10 10 N 1.34778 * 120.00097 * 179.69123 * 8 7 6 11 11 C 1.46499 * 120.00288 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46813 * 34.99915 * 11 10 8 13 13 C 1.52996 * 109.47369 * 154.99725 * 11 10 8 14 14 C 1.53002 * 109.46972 * 60.00336 * 13 11 10 15 15 C 1.52997 * 109.47415 * 59.99860 * 14 13 11 16 16 H 1.09000 * 109.47140 * 59.99976 * 15 14 13 17 17 C 1.52999 * 109.47269 * 180.02562 * 15 14 13 18 18 O 1.42910 * 109.46729 * 294.99534 * 17 15 14 19 19 C 1.53006 * 109.47164 * 300.00027 * 15 14 13 20 20 C 1.52997 * 109.47012 * 274.99862 * 11 10 8 21 21 N 1.35528 * 125.56050 * 299.99855 * 4 2 1 22 22 H 0.96704 * 113.99695 * 60.00930 * 1 2 3 23 23 H 1.09004 * 109.47407 * 119.99854 * 2 1 3 24 24 H 1.48497 * 110.00308 * 59.99646 * 3 2 1 25 25 H 1.48507 * 110.00306 * 181.31912 * 3 2 1 26 26 H 1.07998 * 126.07258 * 359.97438 * 5 4 2 27 27 H 1.08000 * 126.45407 * 180.26144 * 6 5 4 28 28 H 0.97007 * 119.99934 * 0.02562 * 10 8 7 29 29 H 1.08992 * 109.47534 * 300.00357 * 13 11 10 30 30 H 1.08996 * 109.47134 * 179.97438 * 13 11 10 31 31 H 1.09000 * 109.46986 * 299.99742 * 14 13 11 32 32 H 1.09001 * 109.47601 * 180.02562 * 14 13 11 33 33 H 1.08997 * 109.47756 * 54.99411 * 17 15 14 34 34 H 1.09001 * 109.47317 * 175.00294 * 17 15 14 35 35 H 0.96696 * 113.99442 * 179.97438 * 18 17 15 36 36 H 1.08993 * 109.46955 * 180.02562 * 19 15 14 37 37 H 1.09000 * 109.47050 * 300.00004 * 19 15 14 38 38 H 1.09000 * 109.47140 * 179.97438 * 20 11 10 39 39 H 1.09002 * 109.47045 * 59.99785 * 20 11 10 40 40 H 0.97004 * 125.68206 * 0.02562 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7138 -0.1637 -2.1915 6 6 2.9627 -1.1478 -3.1532 7 6 2.3028 -2.2879 -2.7464 8 6 2.2796 -3.5742 -3.4508 9 8 2.8785 -3.7031 -4.5023 10 7 1.5950 -4.6136 -2.9334 11 6 1.5722 -5.8986 -3.6366 12 1 2.5339 -6.0640 -4.1224 13 6 1.3068 -7.0238 -2.6345 14 6 -0.0431 -6.7916 -1.9527 15 6 -1.1513 -6.7761 -3.0075 16 1 -1.1682 -7.7322 -3.5308 17 6 -2.5010 -6.5433 -2.3258 18 8 -2.8031 -7.6522 -1.4763 19 6 -0.8859 -5.6509 -4.0097 20 6 0.4640 -5.8831 -4.6914 21 7 1.6745 -2.0008 -1.5557 22 1 -0.3933 0.4416 -0.7652 23 1 1.7924 -0.5138 0.8900 24 1 1.5613 2.4680 1.2084 25 1 3.5346 1.7704 -0.0321 26 1 3.0835 0.8509 -2.2095 27 1 3.5575 -1.0352 -4.0476 28 1 1.1173 -4.5108 -2.0954 29 1 2.0962 -7.0348 -1.8831 30 1 1.2894 -7.9797 -3.1578 31 1 -0.0262 -5.8355 -1.4295 32 1 -0.2321 -7.5929 -1.2384 33 1 -2.4550 -5.6315 -1.7304 34 1 -3.2784 -6.4438 -3.0834 35 1 -3.6467 -7.5722 -1.0104 36 1 -1.6756 -5.6396 -4.7608 37 1 -0.8689 -4.6948 -3.4864 38 1 0.4474 -6.8390 -5.2149 39 1 0.6531 -5.0815 -5.4054 40 1 1.1373 -2.6191 -1.0360 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_6580494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:48 Heat of formation + Delta-G solvation = -87.462329 kcal Electronic energy + Delta-G solvation = -22701.624049 eV Core-core repulsion = 19289.757004 eV Total energy + Delta-G solvation = -3411.867044 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.56367 -41.08881 -39.38473 -37.69064 -37.46477 -34.94911 -32.47340 -31.87863 -31.78862 -30.90011 -27.13512 -26.16417 -23.78315 -23.58977 -22.20001 -21.61621 -21.19019 -20.25010 -19.97596 -18.25344 -18.13768 -16.99403 -16.77346 -16.69191 -16.13896 -16.00135 -15.73410 -15.29995 -15.12385 -15.02497 -14.85511 -14.43738 -14.32617 -14.03419 -13.98596 -13.71899 -13.35824 -13.20268 -13.12631 -12.59361 -12.21014 -12.19214 -12.06471 -11.57629 -11.39026 -11.32223 -11.17234 -10.85824 -10.67251 -10.25186 -10.08310 -9.27836 -4.90822 0.29571 1.22941 1.53961 1.72833 1.90948 2.01344 2.20900 2.27354 3.25889 3.46385 3.56762 3.60527 3.65963 3.79277 3.85079 4.04814 4.19742 4.25271 4.30090 4.34690 4.37044 4.43050 4.44983 4.45752 4.61278 4.67621 4.72086 4.93817 4.95810 4.98815 5.05377 5.09105 5.11613 5.16488 5.33694 5.36677 5.43149 5.58757 5.78797 6.26274 6.44094 6.67027 6.86382 7.03423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.054 4.054 3 Si 0.803 3.197 4 C 0.029 3.971 5 C -0.205 4.205 6 C -0.117 4.117 7 C -0.065 4.065 8 C 0.588 3.412 9 O -0.570 6.570 10 N -0.709 5.709 11 C 0.147 3.853 12 H 0.074 0.926 13 C -0.122 4.122 14 C -0.106 4.106 15 C -0.086 4.086 16 H 0.071 0.929 17 C 0.077 3.923 18 O -0.594 6.594 19 C -0.104 4.104 20 C -0.127 4.127 21 N -0.513 5.513 22 H 0.399 0.601 23 H 0.116 0.884 24 H -0.295 1.295 25 H -0.286 1.286 26 H 0.168 0.832 27 H 0.145 0.855 28 H 0.404 0.596 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.395 0.605 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.658 1.885 2.373 5.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.164 4.164 3 Si 0.708 3.292 4 C -0.090 4.090 5 C -0.229 4.229 6 C -0.144 4.144 7 C -0.179 4.179 8 C 0.377 3.623 9 O -0.449 6.449 10 N -0.361 5.361 11 C 0.043 3.957 12 H 0.092 0.908 13 C -0.160 4.160 14 C -0.144 4.144 15 C -0.105 4.105 16 H 0.089 0.911 17 C 0.000 4.000 18 O -0.402 6.402 19 C -0.142 4.142 20 C -0.165 4.165 21 N -0.110 5.110 22 H 0.249 0.751 23 H 0.133 0.867 24 H -0.223 1.223 25 H -0.212 1.212 26 H 0.186 0.814 27 H 0.163 0.837 28 H 0.241 0.759 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.245 0.755 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -3.212 1.671 2.429 4.360 hybrid contribution -0.745 -0.792 0.769 1.332 sum -3.958 0.878 3.198 5.164 Atomic orbital electron populations 1.86472 1.16790 1.82137 1.50786 1.25048 0.85420 1.11212 0.94719 0.92977 0.77852 0.73820 0.84589 1.21349 1.03070 0.84994 0.99556 1.20941 1.05196 1.01186 0.95587 1.21486 1.00726 0.91490 1.00698 1.20340 1.08948 0.96380 0.92197 1.17248 0.78329 0.82765 0.83971 1.90840 1.46427 1.83564 1.24063 1.45913 1.52264 1.11350 1.26566 1.20983 0.99221 0.82230 0.93271 0.90825 1.21812 0.98009 0.97854 0.98317 1.21476 0.93207 1.02173 0.97506 1.21149 0.93746 0.99534 0.96063 0.91089 1.22270 0.96301 0.88596 0.92875 1.86428 1.45098 1.45213 1.63447 1.21404 0.96777 0.97985 0.97986 1.21855 0.94558 1.02646 0.97470 1.41885 1.39766 1.11323 1.18022 0.75068 0.86663 1.22251 1.21239 0.81439 0.83684 0.75873 0.90715 0.89571 0.91683 0.91356 0.92754 0.93154 0.75516 0.91232 0.91744 0.90034 0.92903 0.73477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.75 12.88 -148.98 -1.92 0.83 16 2 C -0.05 0.26 3.08 71.24 0.22 0.48 16 3 Si 0.80 -4.31 30.54 68.60 2.10 -2.22 16 4 C 0.03 -0.07 6.47 41.35 0.27 0.20 16 5 C -0.21 0.13 9.32 22.01 0.21 0.33 16 6 C -0.12 -0.48 10.65 22.57 0.24 -0.24 16 7 C -0.06 -0.22 7.06 40.35 0.28 0.06 16 8 C 0.59 3.71 7.75 86.45 0.67 4.38 16 9 O -0.57 -8.40 16.55 -4.33 -0.07 -8.47 16 10 N -0.71 0.23 4.23 -446.51 -1.89 -1.66 16 11 C 0.15 0.04 2.78 44.99 0.13 0.17 16 12 H 0.07 0.34 7.58 -2.39 -0.02 0.32 16 13 C -0.12 0.38 5.61 30.59 0.17 0.55 16 14 C -0.11 0.38 4.93 30.59 0.15 0.53 16 15 C -0.09 0.24 2.43 -10.79 -0.03 0.21 16 16 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 17 C 0.08 -0.27 6.43 71.98 0.46 0.20 16 18 O -0.59 0.52 13.20 -148.98 -1.97 -1.45 16 19 C -0.10 0.29 5.05 30.60 0.15 0.44 16 20 C -0.13 -0.02 5.60 30.59 0.17 0.15 16 21 N -0.51 1.20 5.99 -171.93 -1.03 0.17 16 22 H 0.40 -4.82 8.70 -74.05 -0.64 -5.46 16 23 H 0.12 -0.54 7.96 -2.38 -0.02 -0.56 16 24 H -0.29 -0.51 7.11 99.48 0.71 0.20 16 25 H -0.29 -0.09 7.11 99.48 0.71 0.62 16 26 H 0.17 -0.84 6.17 -2.91 -0.02 -0.86 16 27 H 0.15 0.70 8.06 -2.91 -0.02 0.68 16 28 H 0.40 -2.17 6.00 -92.70 -0.56 -2.73 16 29 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.06 -0.39 6.51 -2.39 -0.02 -0.41 16 32 H 0.07 -0.07 7.82 -2.39 -0.02 -0.09 16 33 H 0.05 -0.31 8.14 -2.39 -0.02 -0.33 16 34 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.40 -3.41 9.12 -74.06 -0.68 -4.08 16 36 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H 0.06 -0.20 7.60 -2.39 -0.02 -0.22 16 38 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.43 -3.01 8.19 -92.71 -0.76 -3.76 16 Total: 0.00 -19.75 323.59 -3.19 -22.94 By element: Atomic # 1 Polarization: -16.12 SS G_CDS: -1.51 Total: -17.63 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 3.10 Total: 7.47 kcal Atomic # 7 Polarization: 1.43 SS G_CDS: -2.92 Total: -1.49 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -3.96 Total: -9.08 kcal Atomic # 14 Polarization: -4.31 SS G_CDS: 2.10 Total: -2.22 kcal Total: -19.75 -3.19 -22.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_6580494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.519 kcal (2) G-P(sol) polarization free energy of solvation -19.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds