Wall clock time and date at job start Tue Mar 9 2021 12:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33820 * 122.45134 * 2 1 4 4 C 1.50701 * 124.52091 * 0.02562 * 3 2 1 5 5 O 1.42900 * 109.46667 * 113.32888 * 4 3 2 6 6 Si 1.86294 * 109.46998 * 233.32597 * 4 3 2 7 7 S 1.70620 * 110.95344 * 180.28781 * 3 2 1 8 8 C 1.75838 * 91.56199 * 359.65699 * 7 3 2 9 9 C 1.46586 * 125.45490 * 180.02562 * 8 7 3 10 10 O 1.21700 * 119.99681 * 180.32402 * 9 8 7 11 11 N 1.34772 * 119.99920 * 0.32295 * 9 8 7 12 12 C 1.46503 * 120.00146 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.46996 * 325.00238 * 12 11 9 14 14 C 1.53002 * 109.46914 * 84.99819 * 12 11 9 15 15 C 1.53000 * 109.46928 * 60.00594 * 14 12 11 16 16 C 1.53002 * 109.47032 * 59.99727 * 15 14 12 17 17 H 1.08999 * 109.47486 * 60.00081 * 16 15 14 18 18 C 1.53000 * 109.47032 * 180.02562 * 16 15 14 19 19 O 1.42896 * 109.47261 * 295.00135 * 18 16 15 20 20 C 1.53005 * 109.47144 * 299.99818 * 16 15 14 21 21 C 1.52995 * 109.47333 * 205.00533 * 12 11 9 22 22 C 1.36639 * 109.08541 * 0.33933 * 8 7 3 23 23 H 1.08992 * 109.46853 * 84.90087 * 1 2 3 24 24 H 1.08992 * 109.46953 * 204.90239 * 1 2 3 25 25 H 1.08998 * 109.47053 * 324.90052 * 1 2 3 26 26 H 1.09000 * 109.46774 * 353.32918 * 4 3 2 27 27 H 0.96692 * 114.00171 * 60.00250 * 5 4 3 28 28 H 1.48505 * 109.99979 * 179.97438 * 6 4 3 29 29 H 1.48495 * 110.00426 * 301.32379 * 6 4 3 30 30 H 0.97006 * 120.00609 * 0.02562 * 11 9 8 31 31 H 1.08999 * 109.46880 * 180.02562 * 14 12 11 32 32 H 1.08991 * 109.47074 * 300.00413 * 14 12 11 33 33 H 1.09004 * 109.47069 * 299.99908 * 15 14 12 34 34 H 1.08997 * 109.47263 * 179.97438 * 15 14 12 35 35 H 1.09005 * 109.47323 * 55.00189 * 18 16 15 36 36 H 1.09000 * 109.47425 * 174.99787 * 18 16 15 37 37 H 0.96704 * 114.00291 * 180.02562 * 19 18 16 38 38 H 1.08992 * 109.47121 * 300.00110 * 20 16 15 39 39 H 1.09005 * 109.46700 * 180.02562 * 20 16 15 40 40 H 1.08994 * 109.47568 * 59.99960 * 21 12 11 41 41 H 1.09004 * 109.46845 * 180.02562 * 21 12 11 42 42 H 1.07996 * 123.35381 * 179.78080 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1292 0.0000 4 6 1.6356 2.5162 0.0006 5 8 1.9408 3.1628 1.2378 6 14 2.3576 3.4983 -1.4082 7 16 3.8970 0.7891 -0.0080 8 6 3.5937 -0.9429 -0.0009 9 6 4.6231 -1.9864 -0.0026 10 8 4.3001 -3.1597 -0.0031 11 7 5.9272 -1.6464 -0.0036 12 6 6.9561 -2.6894 -0.0048 13 1 6.6125 -3.5394 0.5847 14 6 7.2235 -3.1403 -1.4422 15 6 7.7059 -1.9472 -2.2696 16 6 8.9953 -1.3924 -1.6609 17 1 9.7608 -2.1683 -1.6618 18 6 9.4773 -0.1988 -2.4879 19 8 9.8377 -0.6415 -3.7980 20 6 8.7278 -0.9414 -0.2235 21 6 8.2454 -2.1345 0.6039 22 6 2.2447 -1.1602 -0.0005 23 1 -0.3633 0.0913 -1.0235 24 1 -0.3633 -0.9321 0.4327 25 1 -0.3633 0.8408 0.5909 26 1 0.5540 2.4512 -0.1184 27 1 2.8877 3.2553 1.4101 28 1 1.7838 4.8680 -1.4190 29 1 3.8349 3.5670 -1.2749 30 1 6.1848 -0.7112 -0.0029 31 1 7.9887 -3.9166 -1.4431 32 1 6.3050 -3.5356 -1.8758 33 1 6.9404 -1.1711 -2.2687 34 1 7.8968 -2.2685 -3.2935 35 1 8.6784 0.5392 -2.5607 36 1 10.3447 0.2513 -2.0051 37 1 10.1537 0.0643 -4.3786 38 1 7.9624 -0.1655 -0.2226 39 1 9.6464 -0.5457 0.2100 40 1 8.0550 -1.8133 1.6279 41 1 9.0111 -2.9104 0.6026 42 1 1.8019 -2.1452 0.0000 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_6739946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:56 Heat of formation + Delta-G solvation = -101.488508 kcal Electronic energy + Delta-G solvation = -24302.284551 eV Core-core repulsion = 20760.623683 eV Total energy + Delta-G solvation = -3541.660867 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.123 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.47483 -40.08387 -39.32161 -37.75844 -37.42160 -34.91001 -32.75563 -31.84948 -31.37973 -29.83990 -27.14515 -26.04349 -24.44190 -23.70610 -22.29648 -22.03823 -20.43745 -20.12746 -19.58746 -18.23576 -17.86337 -17.58992 -16.98098 -16.63890 -16.23827 -16.08253 -15.86952 -15.68452 -15.24695 -15.15658 -14.77650 -14.67372 -14.41801 -14.05113 -13.95372 -13.53227 -13.47793 -13.25439 -13.16760 -13.07590 -12.99994 -12.49099 -12.47374 -12.31898 -12.17582 -11.80365 -11.60481 -11.36566 -11.29774 -11.12932 -10.95687 -10.82066 -10.25969 -9.74070 -9.46318 -5.00603 -0.71583 0.25245 0.66330 1.08026 1.24863 1.50234 1.86924 1.97205 2.04075 3.24857 3.28953 3.49497 3.58082 3.67467 3.72235 3.88578 4.01460 4.07446 4.22005 4.24323 4.38177 4.40105 4.43199 4.45548 4.47263 4.51382 4.62711 4.69242 4.72562 4.78011 4.85727 4.98231 4.99542 5.02722 5.06418 5.11521 5.18183 5.29305 5.35498 5.38030 5.39804 5.45475 6.29608 6.30503 6.89742 6.98332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.099 4.099 3 C -0.230 4.230 4 C -0.049 4.049 5 O -0.539 6.539 6 Si 0.737 3.263 7 S 0.221 5.779 8 C -0.279 4.279 9 C 0.589 3.411 10 O -0.569 6.569 11 N -0.707 5.707 12 C 0.145 3.855 13 H 0.075 0.925 14 C -0.128 4.128 15 C -0.102 4.102 16 C -0.087 4.087 17 H 0.072 0.928 18 C 0.076 3.924 19 O -0.596 6.596 20 C -0.112 4.112 21 C -0.121 4.121 22 C -0.054 4.054 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.141 0.859 27 H 0.384 0.616 28 H -0.278 1.278 29 H -0.256 1.256 30 H 0.406 0.594 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.395 0.605 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.202 5.141 -1.289 5.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.112 4.112 3 C -0.349 4.349 4 C -0.160 4.160 5 O -0.347 6.347 6 Si 0.638 3.362 7 S 0.491 5.509 8 C -0.399 4.399 9 C 0.376 3.624 10 O -0.450 6.450 11 N -0.359 5.359 12 C 0.041 3.959 13 H 0.094 0.906 14 C -0.167 4.167 15 C -0.140 4.140 16 C -0.106 4.106 17 H 0.091 0.909 18 C -0.002 4.002 19 O -0.404 6.404 20 C -0.149 4.149 21 C -0.159 4.159 22 C -0.087 4.087 23 H 0.111 0.889 24 H 0.091 0.909 25 H 0.094 0.906 26 H 0.158 0.842 27 H 0.233 0.767 28 H -0.204 1.204 29 H -0.181 1.181 30 H 0.243 0.757 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.244 0.756 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.005 5.374 -1.229 6.278 hybrid contribution -0.607 -0.194 0.771 1.000 sum 2.398 5.179 -0.458 5.726 Atomic orbital electron populations 1.20686 0.87698 1.03675 1.03999 1.18825 0.99154 0.90255 1.02929 1.24550 0.98683 1.01057 1.10635 1.24808 1.06575 0.89428 0.95170 1.86651 1.30542 1.79775 1.37778 0.93882 0.79041 0.78974 0.84298 1.82621 1.03164 0.96705 1.68452 1.24504 0.97932 0.97740 1.19723 1.17186 0.82544 0.87099 0.75583 1.90826 1.82314 1.19866 1.51956 1.45929 1.04577 1.10919 1.74443 1.21047 0.87720 0.90370 0.96721 0.90650 1.21889 1.01047 0.98706 0.95058 1.21405 0.96647 0.97227 0.98719 1.21174 0.97277 0.97607 0.94510 0.90925 1.22313 0.98915 0.95863 0.83087 1.86441 1.88014 1.40831 1.25155 1.21529 1.02465 0.97594 0.93352 1.21808 0.95262 0.99246 0.99568 1.20831 0.91164 1.00460 0.96294 0.88886 0.90895 0.90612 0.84163 0.76662 1.20418 1.18098 0.75686 0.90159 0.93537 0.92337 0.92613 0.92902 0.92409 0.75558 0.91336 0.89490 0.89958 0.89031 0.83207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.36 9.48 71.24 0.68 1.03 16 2 C -0.10 -0.04 5.78 -21.05 -0.12 -0.17 16 3 C -0.23 0.23 4.83 24.68 0.12 0.35 16 4 C -0.05 0.13 2.77 71.24 0.20 0.33 16 5 O -0.54 -0.14 12.88 -148.98 -1.92 -2.06 16 6 Si 0.74 -3.04 32.12 68.60 2.20 -0.84 16 7 S 0.22 -0.41 20.82 -56.49 -1.18 -1.59 16 8 C -0.28 -1.13 6.45 24.08 0.16 -0.98 16 9 C 0.59 4.40 7.75 86.42 0.67 5.07 16 10 O -0.57 -8.79 16.50 -4.35 -0.07 -8.86 16 11 N -0.71 -0.92 4.23 -446.59 -1.89 -2.81 16 12 C 0.15 0.14 2.78 44.99 0.13 0.26 16 13 H 0.08 0.37 7.58 -2.39 -0.02 0.35 16 14 C -0.13 -0.30 5.60 30.60 0.17 -0.13 16 15 C -0.10 -0.09 4.94 30.60 0.15 0.07 16 16 C -0.09 0.22 2.43 -10.79 -0.03 0.19 16 17 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 18 C 0.08 -0.25 6.43 71.98 0.46 0.21 16 19 O -0.60 -0.14 13.19 -148.98 -1.97 -2.10 16 20 C -0.11 0.70 5.03 30.60 0.15 0.85 16 21 C -0.12 0.56 5.61 30.59 0.17 0.73 16 22 C -0.05 -0.21 9.78 21.72 0.21 0.00 16 23 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 24 H 0.07 -0.25 8.10 -2.39 -0.02 -0.27 16 25 H 0.08 -0.30 6.99 -2.39 -0.02 -0.32 16 26 H 0.14 -0.67 6.25 -2.39 -0.01 -0.69 16 27 H 0.38 -2.07 8.70 -74.06 -0.64 -2.71 16 28 H -0.28 -0.65 7.11 99.48 0.71 0.06 16 29 H -0.26 0.54 7.11 99.48 0.71 1.25 16 30 H 0.41 -1.31 5.98 -92.70 -0.55 -1.86 16 31 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.06 0.04 7.60 -2.38 -0.02 0.02 16 34 H 0.06 0.25 7.82 -2.39 -0.02 0.23 16 35 H 0.05 -0.27 8.14 -2.38 -0.02 -0.29 16 36 H 0.06 -0.33 8.14 -2.39 -0.02 -0.35 16 37 H 0.39 -3.10 9.12 -74.05 -0.68 -3.77 16 38 H 0.07 -0.53 6.50 -2.39 -0.02 -0.55 16 39 H 0.09 -0.72 8.14 -2.38 -0.02 -0.74 16 40 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.09 -0.50 8.14 -2.38 -0.02 -0.52 16 42 H 0.15 0.68 8.06 -2.91 -0.02 0.65 16 Total: 0.00 -18.26 349.60 -2.48 -20.74 By element: Atomic # 1 Polarization: -9.51 SS G_CDS: -0.78 Total: -10.29 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 3.12 Total: 7.82 kcal Atomic # 7 Polarization: -0.92 SS G_CDS: -1.89 Total: -2.81 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -3.96 Total: -13.02 kcal Atomic # 14 Polarization: -3.04 SS G_CDS: 2.20 Total: -0.84 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -1.18 Total: -1.59 kcal Total: -18.26 -2.48 -20.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_6739946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.750 kcal (2) G-P(sol) polarization free energy of solvation -18.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds