Wall clock time and date at job start Tue Mar 9 2021 12:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86310 * 109.47036 * 2 1 4 4 C 1.50699 * 109.47333 * 119.99790 * 2 1 3 5 5 C 1.34236 * 126.49951 * 255.36265 * 4 2 1 6 6 N 1.36837 * 109.93676 * 180.13062 * 5 4 2 7 7 C 1.46497 * 125.06798 * 179.81246 * 6 5 4 8 8 C 1.50701 * 109.47198 * 264.69963 * 7 6 5 9 9 O 1.21275 * 119.99632 * 359.97438 * 8 7 6 10 10 N 1.34768 * 119.99945 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00085 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47129 * 325.00582 * 11 10 8 13 13 C 1.53002 * 109.47089 * 85.00503 * 11 10 8 14 14 C 1.52996 * 109.46972 * 59.99956 * 13 11 10 15 15 C 1.52997 * 109.47131 * 60.00459 * 14 13 11 16 16 H 1.08993 * 109.47194 * 60.00154 * 15 14 13 17 17 C 1.53006 * 109.46943 * 179.97438 * 15 14 13 18 18 O 1.42897 * 109.47254 * 294.99971 * 17 15 14 19 19 C 1.52999 * 109.46991 * 299.99311 * 15 14 13 20 20 C 1.52997 * 109.47473 * 205.00325 * 11 10 8 21 21 C 1.37697 * 109.87496 * 359.54796 * 6 5 4 22 22 C 1.39081 * 133.51884 * 180.28455 * 21 6 5 23 23 C 1.37787 * 119.77873 * 179.97438 * 22 21 6 24 24 C 1.38786 * 120.66923 * 359.97438 * 23 22 21 25 25 C 1.36661 * 120.52748 * 0.04244 * 24 23 22 26 26 C 1.39592 * 119.76513 * 359.95967 * 25 24 23 27 27 H 0.96702 * 114.00295 * 300.00076 * 1 2 3 28 28 H 1.08996 * 109.47352 * 240.00262 * 2 1 3 29 29 H 1.48496 * 109.99955 * 178.68021 * 3 2 1 30 30 H 1.48498 * 109.99836 * 299.99773 * 3 2 1 31 31 H 1.07999 * 125.03526 * 359.96688 * 5 4 2 32 32 H 1.08996 * 109.47607 * 144.69337 * 7 6 5 33 33 H 1.09009 * 109.46532 * 24.69510 * 7 6 5 34 34 H 0.97006 * 120.00285 * 0.02562 * 10 8 7 35 35 H 1.08996 * 109.47407 * 180.02562 * 13 11 10 36 36 H 1.09000 * 109.46986 * 300.00214 * 13 11 10 37 37 H 1.09001 * 109.46993 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.47380 * 299.99696 * 14 13 11 39 39 H 1.09001 * 109.47164 * 55.00166 * 17 15 14 40 40 H 1.08998 * 109.46741 * 174.99515 * 17 15 14 41 41 H 0.96702 * 113.99667 * 179.97438 * 18 17 15 42 42 H 1.08993 * 109.47839 * 300.00447 * 19 15 14 43 43 H 1.09000 * 109.47160 * 180.02562 * 19 15 14 44 44 H 1.09001 * 109.47502 * 180.02562 * 20 11 10 45 45 H 1.09001 * 109.47289 * 60.00327 * 20 11 10 46 46 H 1.08002 * 120.10891 * 359.95302 * 22 21 6 47 47 H 1.08008 * 119.66453 * 180.02562 * 23 22 21 48 48 H 1.08001 * 119.73640 * 180.02562 * 24 23 22 49 49 H 1.08002 * 120.11613 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 2.4546 -0.1371 2.3257 6 7 2.8016 -1.0988 3.2352 7 6 3.4055 -0.8402 4.5446 8 6 4.9039 -0.9623 4.4397 9 8 5.4167 -1.2386 3.3760 10 7 5.6739 -0.7644 5.5278 11 6 7.1305 -0.8837 5.4260 12 1 7.3818 -1.6690 4.7130 13 6 7.7190 0.4456 4.9490 14 6 7.3662 1.5478 5.9498 15 6 7.9463 1.1962 7.3211 16 1 9.0300 1.1076 7.2453 17 6 7.5941 2.2988 8.3218 18 8 8.2402 3.5143 7.9383 19 6 7.3579 -0.1330 7.7982 20 6 7.7106 -1.2353 6.7974 21 6 2.4931 -2.3456 2.7388 22 6 2.6277 -3.6360 3.2398 23 6 2.2141 -4.7105 2.4830 24 6 1.6631 -4.5192 1.2236 25 6 1.5219 -3.2600 0.7117 26 6 1.9342 -2.1569 1.4613 27 1 -0.3934 0.4417 0.7650 28 1 1.7923 -0.5138 -0.8900 29 1 3.5345 1.7704 0.0321 30 1 1.5615 2.4679 -1.2085 31 1 2.5851 0.9257 2.4670 32 1 3.0315 -1.5657 5.2669 33 1 3.1451 0.1663 4.8723 34 1 5.2637 -0.5438 6.3787 35 1 8.8026 0.3568 4.8728 36 1 7.3057 0.6962 3.9720 37 1 7.7850 2.4950 5.6097 38 1 6.2825 1.6366 6.0255 39 1 6.5145 2.4488 8.3320 40 1 7.9298 2.0071 9.3169 41 1 8.0608 4.2585 8.5292 42 1 6.2742 -0.0444 7.8740 43 1 7.7708 -0.3833 8.7754 44 1 8.7944 -1.3236 6.7217 45 1 7.2915 -2.1824 7.1373 46 1 3.0552 -3.7953 4.2188 47 1 2.3190 -5.7119 2.8740 48 1 1.3435 -5.3722 0.6434 49 1 1.0926 -3.1187 -0.2692 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207534_9818708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:12 Heat of formation + Delta-G solvation = -59.695890 kcal Electronic energy + Delta-G solvation = -30794.226501 eV Core-core repulsion = 26687.809841 eV Total energy + Delta-G solvation = -4106.416661 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.54335 -41.25038 -39.51985 -38.10707 -37.67332 -37.37168 -34.85605 -34.05641 -32.01405 -31.79788 -31.11750 -30.23629 -28.81694 -26.44941 -25.64177 -23.82561 -23.67469 -22.91802 -22.15407 -21.87801 -20.66834 -20.21928 -18.76777 -18.44724 -18.17814 -17.70934 -17.26759 -16.69148 -16.65738 -16.43230 -16.16316 -16.00445 -15.77805 -15.43675 -15.26399 -15.14253 -14.81604 -14.70150 -14.69108 -14.40714 -14.07533 -13.93245 -13.68992 -13.51884 -13.23498 -13.10861 -13.05430 -12.72092 -12.58774 -12.43685 -12.27675 -12.14751 -12.13300 -11.82981 -11.56786 -11.32555 -11.14303 -11.09483 -10.79489 -10.55506 -10.32131 -10.12609 -9.16356 -8.63044 -5.07591 0.13428 0.62589 1.32748 1.43164 1.48907 1.63302 1.74882 1.98299 2.23879 2.93901 3.32236 3.57093 3.62186 3.67091 3.70454 3.72066 3.77525 3.86863 3.91234 4.04089 4.04388 4.16002 4.20513 4.27012 4.29483 4.41348 4.42863 4.47136 4.48502 4.49288 4.55449 4.66276 4.70622 4.74095 4.75986 4.77809 4.87515 5.00703 5.04813 5.08258 5.12331 5.14363 5.22515 5.40027 5.43693 5.49367 5.49713 5.64916 5.72489 5.74593 6.19523 6.23639 6.50084 6.88326 6.92339 7.17178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.040 4.040 3 Si 0.800 3.200 4 C -0.225 4.225 5 C 0.079 3.921 6 N -0.466 5.466 7 C 0.087 3.913 8 C 0.490 3.510 9 O -0.575 6.575 10 N -0.702 5.702 11 C 0.150 3.850 12 H 0.061 0.939 13 C -0.128 4.128 14 C -0.098 4.098 15 C -0.089 4.089 16 H 0.061 0.939 17 C 0.076 3.924 18 O -0.599 6.599 19 C -0.108 4.108 20 C -0.120 4.120 21 C 0.091 3.909 22 C -0.133 4.133 23 C -0.109 4.109 24 C -0.154 4.154 25 C -0.092 4.092 26 C -0.118 4.118 27 H 0.393 0.607 28 H 0.088 0.912 29 H -0.297 1.297 30 H -0.296 1.296 31 H 0.207 0.793 32 H 0.145 0.855 33 H 0.167 0.833 34 H 0.417 0.583 35 H 0.066 0.934 36 H 0.041 0.959 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.395 0.605 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.134 0.866 47 H 0.146 0.854 48 H 0.135 0.865 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.714 3.209 12.451 12.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.149 4.149 3 Si 0.706 3.294 4 C -0.233 4.233 5 C -0.046 4.046 6 N -0.148 5.148 7 C -0.037 4.037 8 C 0.275 3.725 9 O -0.454 6.454 10 N -0.357 5.357 11 C 0.045 3.955 12 H 0.079 0.921 13 C -0.167 4.167 14 C -0.136 4.136 15 C -0.107 4.107 16 H 0.080 0.920 17 C -0.001 4.001 18 O -0.408 6.408 19 C -0.145 4.145 20 C -0.158 4.158 21 C -0.014 4.014 22 C -0.153 4.153 23 C -0.128 4.128 24 C -0.173 4.173 25 C -0.110 4.110 26 C -0.122 4.122 27 H 0.243 0.757 28 H 0.105 0.895 29 H -0.225 1.225 30 H -0.224 1.224 31 H 0.223 0.777 32 H 0.162 0.838 33 H 0.184 0.816 34 H 0.256 0.744 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.245 0.755 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.152 0.848 47 H 0.163 0.837 48 H 0.153 0.847 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.431 2.991 10.578 11.001 hybrid contribution 0.185 -0.388 -0.080 0.437 sum -0.246 2.603 10.497 10.818 Atomic orbital electron populations 1.86451 1.17678 1.82377 1.50212 1.24549 0.84744 1.10259 0.95386 0.94166 0.76598 0.73668 0.84987 1.20778 1.12065 0.91907 0.98526 1.22053 0.98810 0.95310 0.88435 1.43437 1.51807 1.03767 1.15780 1.22017 0.88498 1.09232 0.83941 1.21506 0.90698 0.76275 0.83992 1.90805 1.75825 1.48650 1.30080 1.45918 1.06643 1.70923 1.12199 1.20831 0.79598 0.96691 0.98342 0.92106 1.21863 1.00792 0.95587 0.98438 1.21374 1.01076 0.97083 0.94039 1.21181 1.00606 0.94432 0.94515 0.92014 1.22326 0.96579 0.84264 0.96961 1.86447 1.75126 1.21912 1.57287 1.21498 1.01867 0.92195 0.98942 1.21771 1.01887 0.99517 0.92576 1.18389 1.01494 0.87108 0.94387 1.20256 1.04520 0.89083 1.01463 1.21129 0.98258 0.99069 0.94310 1.20909 1.02404 0.96948 0.97039 1.20445 0.99332 0.91859 0.99384 1.19371 1.04063 0.93904 0.94903 0.75678 0.89478 1.22485 1.22414 0.77658 0.83754 0.81581 0.74371 0.91519 0.93980 0.93232 0.90956 0.92134 0.92718 0.75541 0.89855 0.90044 0.90369 0.89787 0.84796 0.83650 0.84669 0.86624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.59 12.88 -148.98 -1.92 -4.51 16 2 C -0.04 -0.20 3.06 71.24 0.22 0.02 16 3 Si 0.80 0.35 30.76 68.60 2.11 2.46 16 4 C -0.23 -1.44 5.57 -18.63 -0.10 -1.54 16 5 C 0.08 0.08 9.89 83.00 0.82 0.90 16 6 N -0.47 -0.78 2.27 -519.98 -1.18 -1.96 16 7 C 0.09 -0.65 6.48 85.63 0.56 -0.10 16 8 C 0.49 -0.28 7.86 87.66 0.69 0.41 16 9 O -0.58 -6.94 16.08 -3.01 -0.05 -6.98 16 10 N -0.70 4.54 4.23 -442.55 -1.87 2.66 16 11 C 0.15 -0.36 2.78 44.99 0.13 -0.23 16 12 H 0.06 0.23 7.58 -2.39 -0.02 0.22 16 13 C -0.13 -0.05 5.60 30.59 0.17 0.12 16 14 C -0.10 0.25 4.94 30.59 0.15 0.41 16 15 C -0.09 0.45 2.43 -10.79 -0.03 0.43 16 16 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 17 C 0.08 -0.47 6.43 71.98 0.46 0.00 16 18 O -0.60 0.94 13.19 -148.98 -1.97 -1.02 16 19 C -0.11 1.07 5.03 30.60 0.15 1.22 16 20 C -0.12 0.87 5.61 30.60 0.17 1.04 16 21 C 0.09 0.71 6.80 39.03 0.27 0.97 16 22 C -0.13 -0.76 10.00 22.37 0.22 -0.53 16 23 C -0.11 -0.61 10.01 22.29 0.22 -0.38 16 24 C -0.15 -1.18 9.97 22.03 0.22 -0.96 16 25 C -0.09 -0.99 10.05 22.23 0.22 -0.77 16 26 C -0.12 -1.29 6.35 -20.20 -0.13 -1.41 16 27 H 0.39 -1.83 8.70 -74.06 -0.64 -2.47 16 28 H 0.09 0.76 7.96 -2.39 -0.02 0.74 16 29 H -0.30 -2.17 7.11 99.48 0.71 -1.47 16 30 H -0.30 -2.16 7.11 99.48 0.71 -1.45 16 31 H 0.21 -1.58 6.35 -2.91 -0.02 -1.60 16 32 H 0.14 -1.84 8.14 -2.39 -0.02 -1.86 16 33 H 0.17 -2.71 8.12 -2.38 -0.02 -2.73 16 34 H 0.42 -5.75 6.87 -92.70 -0.64 -6.39 16 35 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.04 0.24 8.14 -2.39 -0.02 0.23 16 37 H 0.05 0.11 7.82 -2.39 -0.02 0.09 16 38 H 0.07 -0.39 7.60 -2.39 -0.02 -0.41 16 39 H 0.06 -0.56 8.14 -2.39 -0.02 -0.58 16 40 H 0.05 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H 0.40 -3.79 9.12 -74.06 -0.68 -4.47 16 42 H 0.08 -1.16 6.50 -2.39 -0.02 -1.18 16 43 H 0.08 -0.88 8.14 -2.39 -0.02 -0.90 16 44 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 45 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 46 H 0.13 0.07 8.06 -2.91 -0.02 0.05 16 47 H 0.15 0.04 8.06 -2.91 -0.02 0.02 16 48 H 0.14 0.48 8.06 -2.91 -0.02 0.46 16 49 H 0.12 1.18 8.06 -2.91 -0.02 1.16 16 Total: 0.00 -32.64 394.64 -1.40 -34.04 By element: Atomic # 1 Polarization: -23.33 SS G_CDS: -0.94 Total: -24.27 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 4.42 Total: -0.41 kcal Atomic # 7 Polarization: 3.76 SS G_CDS: -3.05 Total: 0.70 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -3.93 Total: -12.52 kcal Atomic # 14 Polarization: 0.35 SS G_CDS: 2.11 Total: 2.46 kcal Total: -32.64 -1.40 -34.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207534_9818708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.657 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds