Wall clock time and date at job start Tue Mar 9 2021 12:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.47011 * 2 1 4 4 C 1.35901 * 117.00320 * 84.94971 * 3 2 1 5 5 C 1.38735 * 120.05363 * 174.27509 * 4 3 2 6 6 C 1.38145 * 119.93715 * 179.74342 * 5 4 3 7 7 C 1.38266 * 120.05808 * 0.50725 * 6 5 4 8 8 C 1.50703 * 119.94437 * 179.74763 * 7 6 5 9 9 O 1.42900 * 109.47389 * 120.02045 * 8 7 6 10 10 Si 1.86303 * 109.47045 * 0.02562 * 8 7 6 11 11 C 1.38265 * 120.11366 * 359.76469 * 7 6 5 12 12 C 1.38153 * 120.05090 * 359.97438 * 11 7 6 13 13 C 1.50691 * 109.46977 * 239.99844 * 2 1 3 14 14 O 1.21284 * 120.00019 * 120.00485 * 13 2 1 15 15 N 1.34771 * 120.00060 * 299.99822 * 13 2 1 16 16 C 1.46504 * 120.00286 * 180.02562 * 15 13 2 17 17 H 1.09001 * 109.46829 * 325.00310 * 16 15 13 18 18 C 1.53002 * 109.47170 * 84.99901 * 16 15 13 19 19 C 1.53005 * 109.47182 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.46931 * 300.00349 * 19 18 16 21 21 H 1.08999 * 109.46744 * 299.99739 * 20 19 18 22 22 C 1.53005 * 109.46931 * 179.97438 * 20 19 18 23 23 O 1.42900 * 109.47117 * 174.99852 * 22 20 19 24 24 C 1.53002 * 109.47472 * 59.99829 * 20 19 18 25 25 C 1.52995 * 109.47091 * 300.00093 * 24 20 19 26 26 H 1.08989 * 109.47222 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46810 * 300.00547 * 1 2 3 28 28 H 1.09004 * 109.46862 * 60.00175 * 1 2 3 29 29 H 1.08995 * 109.46831 * 119.99672 * 2 1 3 30 30 H 1.07993 * 120.02863 * 359.97438 * 5 4 3 31 31 H 1.08001 * 119.97192 * 180.23053 * 6 5 4 32 32 H 1.08998 * 109.46815 * 240.02390 * 8 7 6 33 33 H 0.96697 * 113.99784 * 299.99827 * 9 8 7 34 34 H 1.48503 * 110.00015 * 180.02562 * 10 8 7 35 35 H 1.48501 * 109.99970 * 301.32193 * 10 8 7 36 36 H 1.07996 * 119.97303 * 180.02562 * 11 7 6 37 37 H 1.08001 * 120.02201 * 179.97438 * 12 11 7 38 38 H 0.97000 * 120.00335 * 0.02562 * 15 13 2 39 39 H 1.09001 * 109.46910 * 60.00459 * 18 16 15 40 40 H 1.08995 * 109.46872 * 300.00047 * 18 16 15 41 41 H 1.08993 * 109.46953 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.46983 * 60.00308 * 19 18 16 43 43 H 1.09000 * 109.46743 * 294.99685 * 22 20 19 44 44 H 1.09003 * 109.46929 * 54.99655 * 22 20 19 45 45 H 0.96698 * 113.99846 * 179.97438 * 23 22 20 46 46 H 1.09001 * 109.46910 * 59.99754 * 24 20 19 47 47 H 1.08994 * 109.47287 * 179.97438 * 24 20 19 48 48 H 1.08999 * 109.47290 * 180.02562 * 25 24 20 49 49 H 1.08999 * 109.47177 * 300.00121 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.1115 1.9646 1.2062 5 6 2.6777 3.2282 1.2929 6 6 2.7785 3.8557 2.5195 7 6 2.3255 3.2211 3.6614 8 6 2.4420 3.9057 4.9989 9 8 1.1406 4.0661 5.5669 10 14 3.2317 5.5779 4.7739 11 6 1.7660 1.9594 3.5783 12 6 1.6579 1.3299 2.3533 13 6 2.0323 -0.7104 -1.2304 14 8 2.7297 -0.1210 -2.0287 15 7 1.7067 -2.0007 -1.4436 16 6 2.1955 -2.6916 -2.6395 17 1 2.2326 -1.9913 -3.4740 18 6 3.5979 -3.2421 -2.3731 19 6 4.1086 -3.9631 -3.6222 20 6 3.1647 -5.1169 -3.9669 21 1 3.1276 -5.8174 -3.1326 22 6 3.6751 -5.8374 -5.2164 23 8 2.8610 -6.9839 -5.4710 24 6 1.7623 -4.5663 -4.2333 25 6 1.2516 -3.8454 -2.9842 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0357 3.7223 0.4020 31 1 3.2158 4.8409 2.5872 32 1 3.0568 3.3000 5.6646 33 1 0.5383 4.5959 5.0268 34 1 3.3529 6.2631 6.0859 35 1 4.5729 5.4270 4.1545 36 1 1.4125 1.4661 4.4715 37 1 1.2212 0.3442 2.2889 38 1 1.1488 -2.4720 -0.8053 39 1 3.5609 -3.9424 -1.5386 40 1 4.2704 -2.4201 -2.1280 41 1 5.1079 -4.3549 -3.4326 42 1 4.1458 -3.2625 -4.4564 43 1 3.6280 -5.1615 -6.0702 44 1 4.7067 -6.1521 -5.0585 45 1 3.1271 -7.4899 -6.2509 46 1 1.7994 -3.8657 -5.0675 47 1 1.0900 -5.3882 -4.4792 48 1 0.2523 -3.4536 -3.1738 49 1 1.2145 -4.5459 -2.1499 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207542_10157680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:19 Heat of formation + Delta-G solvation = -139.494458 kcal Electronic energy + Delta-G solvation = -28940.782076 eV Core-core repulsion = 24834.101090 eV Total energy + Delta-G solvation = -4106.680986 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.182 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.86685 -40.93838 -39.76520 -38.95412 -37.45705 -37.12672 -35.41414 -33.45181 -32.09233 -31.83671 -31.61179 -30.80411 -26.83493 -26.40170 -25.16514 -24.08852 -23.80066 -22.63660 -22.02608 -21.49433 -20.76957 -19.50637 -18.64359 -18.22734 -18.17500 -17.40955 -16.89623 -16.77680 -16.43253 -16.19548 -15.92340 -15.84070 -15.59131 -15.52836 -15.19967 -15.01959 -14.76167 -14.69451 -14.35384 -14.27120 -14.01127 -13.61698 -13.45077 -13.39455 -13.34720 -13.17971 -13.06273 -12.87424 -12.29700 -12.25514 -12.14673 -12.11935 -12.01832 -11.70003 -11.61794 -11.46153 -11.30980 -10.87941 -10.83885 -10.41860 -10.18272 -10.05651 -9.22663 -5.00048 0.23449 0.31383 1.33179 1.38169 1.49300 1.62957 1.95960 2.46961 2.64592 3.27731 3.41474 3.56035 3.62496 3.64219 3.69143 3.72007 3.81440 3.85781 3.91885 3.94499 4.04826 4.24610 4.26608 4.31701 4.34407 4.38668 4.47313 4.51021 4.52491 4.55564 4.57533 4.63247 4.67246 4.68324 4.79944 4.94203 4.98321 5.03912 5.05662 5.08649 5.12365 5.17648 5.19832 5.28004 5.36142 5.36625 5.46869 5.47261 5.66888 6.24937 6.43624 6.79311 6.87344 7.07886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.064 3.936 3 O -0.312 6.312 4 C 0.119 3.881 5 C -0.159 4.159 6 C -0.077 4.077 7 C -0.161 4.161 8 C -0.064 4.064 9 O -0.555 6.555 10 Si 0.768 3.232 11 C -0.057 4.057 12 C -0.208 4.208 13 C 0.516 3.484 14 O -0.568 6.568 15 N -0.705 5.705 16 C 0.148 3.852 17 H 0.066 0.934 18 C -0.124 4.124 19 C -0.107 4.107 20 C -0.086 4.086 21 H 0.076 0.924 22 C 0.076 3.924 23 O -0.593 6.593 24 C -0.105 4.105 25 C -0.117 4.117 26 H 0.109 0.891 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.123 0.877 30 H 0.135 0.865 31 H 0.148 0.852 32 H 0.108 0.892 33 H 0.395 0.605 34 H -0.299 1.299 35 H -0.289 1.289 36 H 0.139 0.861 37 H 0.154 0.846 38 H 0.419 0.581 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.395 0.605 46 H 0.059 0.941 47 H 0.071 0.929 48 H 0.078 0.922 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 -3.675 0.081 5.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 O -0.225 6.225 4 C 0.074 3.926 5 C -0.178 4.178 6 C -0.094 4.094 7 C -0.161 4.161 8 C -0.174 4.174 9 O -0.363 6.363 10 Si 0.675 3.325 11 C -0.075 4.075 12 C -0.226 4.226 13 C 0.302 3.698 14 O -0.446 6.446 15 N -0.358 5.358 16 C 0.043 3.957 17 H 0.084 0.916 18 C -0.163 4.163 19 C -0.145 4.145 20 C -0.105 4.105 21 H 0.095 0.905 22 C -0.002 4.002 23 O -0.401 6.401 24 C -0.143 4.143 25 C -0.155 4.155 26 H 0.127 0.873 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.141 0.859 30 H 0.153 0.847 31 H 0.165 0.835 32 H 0.125 0.875 33 H 0.245 0.755 34 H -0.227 1.227 35 H -0.216 1.216 36 H 0.157 0.843 37 H 0.171 0.829 38 H 0.256 0.744 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.245 0.755 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.097 0.903 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.506 -2.812 0.502 3.800 hybrid contribution 0.465 -0.940 -0.226 1.073 sum -2.041 -3.752 0.275 4.280 Atomic orbital electron populations 1.22371 0.90382 1.05701 1.04446 1.22413 0.97257 0.82179 0.97676 1.86185 1.81489 1.26923 1.27920 1.19271 0.95859 0.93187 0.84256 1.20588 1.03787 0.94160 0.99263 1.20976 0.97851 0.99626 0.90979 1.20343 1.03648 0.96737 0.95422 1.24997 0.90414 1.09100 0.92909 1.86455 1.22977 1.76778 1.50098 0.93782 0.80666 0.77761 0.80321 1.20981 0.95387 0.93655 0.97437 1.21521 1.06601 1.02580 0.91914 1.20535 0.79747 0.82514 0.87004 1.90746 1.38942 1.67122 1.47829 1.45831 1.53384 1.10522 1.26099 1.21008 0.93957 0.93726 0.86981 0.91620 1.21842 0.95818 0.99683 0.98907 1.21433 0.98961 0.96611 0.97530 1.21162 0.95440 0.96356 0.97536 0.90532 1.22273 0.93514 0.87126 0.97265 1.86412 1.58940 1.41998 1.52767 1.21436 0.96054 0.99634 0.97208 1.21755 0.98460 0.96041 0.99232 0.87268 0.89554 0.92006 0.85916 0.84729 0.83495 0.87503 0.75496 1.22713 1.21627 0.84295 0.82900 0.74353 0.90329 0.93397 0.90772 0.91976 0.93201 0.92938 0.75497 0.92241 0.91044 0.90316 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.99 9.07 71.98 0.65 1.64 16 2 C 0.06 -0.02 2.64 29.85 0.08 0.05 16 3 O -0.31 -2.20 9.33 -73.40 -0.68 -2.88 16 4 C 0.12 0.50 6.60 22.51 0.15 0.65 16 5 C -0.16 -0.61 9.99 22.37 0.22 -0.38 16 6 C -0.08 -0.05 8.66 22.25 0.19 0.15 16 7 C -0.16 -0.05 5.39 -19.85 -0.11 -0.16 16 8 C -0.06 0.04 2.82 71.24 0.20 0.24 16 9 O -0.56 0.21 12.77 -148.98 -1.90 -1.69 16 10 Si 0.77 -1.12 29.78 68.60 2.04 0.93 16 11 C -0.06 0.00 9.60 22.26 0.21 0.22 16 12 C -0.21 0.06 8.24 22.37 0.18 0.24 16 13 C 0.52 2.24 7.20 87.66 0.63 2.87 16 14 O -0.57 -8.73 16.16 16.00 0.26 -8.47 16 15 N -0.70 1.99 4.97 -442.53 -2.20 -0.21 16 16 C 0.15 -0.10 2.45 44.99 0.11 0.01 16 17 H 0.07 0.32 7.58 -2.39 -0.02 0.31 16 18 C -0.12 0.03 5.50 30.60 0.17 0.19 16 19 C -0.11 0.15 5.20 30.60 0.16 0.31 16 20 C -0.09 0.15 2.43 -10.79 -0.03 0.12 16 21 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 22 C 0.08 -0.14 6.43 71.98 0.46 0.32 16 23 O -0.59 -0.08 13.19 -148.98 -1.97 -2.05 16 24 C -0.11 0.20 5.10 30.59 0.16 0.36 16 25 C -0.12 0.53 5.39 30.59 0.16 0.70 16 26 H 0.11 -1.31 7.56 -2.39 -0.02 -1.33 16 27 H 0.09 -0.58 6.91 -2.38 -0.02 -0.59 16 28 H 0.06 -0.12 8.14 -2.38 -0.02 -0.14 16 29 H 0.12 -0.69 6.31 -2.39 -0.02 -0.70 16 30 H 0.13 0.44 8.06 -2.91 -0.02 0.42 16 31 H 0.15 -0.49 4.87 -2.91 -0.01 -0.51 16 32 H 0.11 0.04 7.96 -2.39 -0.02 0.02 16 33 H 0.40 -3.22 8.70 -74.06 -0.64 -3.86 16 34 H -0.30 -1.78 7.11 99.48 0.71 -1.07 16 35 H -0.29 -1.08 7.11 99.48 0.71 -0.37 16 36 H 0.14 -0.31 8.06 -2.91 -0.02 -0.33 16 37 H 0.15 -0.88 5.43 -2.91 -0.02 -0.89 16 38 H 0.42 -4.26 8.02 -92.71 -0.74 -5.00 16 39 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 42 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.40 -3.04 9.12 -74.06 -0.68 -3.71 16 46 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.07 -0.02 7.82 -2.39 -0.02 -0.04 16 48 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 49 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 Total: 0.00 -24.54 389.10 -1.88 -26.42 By element: Atomic # 1 Polarization: -18.54 SS G_CDS: -1.05 Total: -19.59 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 3.61 Total: 7.54 kcal Atomic # 7 Polarization: 1.99 SS G_CDS: -2.20 Total: -0.21 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -4.29 Total: -15.09 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: 2.04 Total: 0.93 kcal Total: -24.54 -1.88 -26.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_10157680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.074 kcal (2) G-P(sol) polarization free energy of solvation -24.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds